GitBucket 4.8 release

Add API to get a single issue

.travis.yml

@@ -1,6 +1,11 @@
 language: scala
-sudo: false
+sudo: true
 script:
   - sbt test
 jdk:
   - oraclejdk8
+before_script:
+  - sudo apt-get install libaio1
+  - sudo /etc/init.d/mysql stop
+  - sudo /etc/init.d/postgresql stop
+

LICENSE

@@ -187,7 +187,7 @@
       same "printed page" as the copyright notice for easier
       identification within third-party archives.
 
-   Copyright [yyyy] [name of copyright owner]
+   Copyright 2013-2016 GitBucket Team
 
    Licensed under the Apache License, Version 2.0 (the "License");
    you may not use this file except in compliance with the License.

README.md

@@ -1,7 +1,10 @@
 GitBucket [![Gitter chat](https://badges.gitter.im/gitbucket/gitbucket.png)](https://gitter.im/gitbucket/gitbucket) [![Build Status](https://travis-ci.org/gitbucket/gitbucket.svg?branch=master)](https://travis-ci.org/gitbucket/gitbucket)
 =========
 
-GitBucket is a GitHub clone powered by Scala which has easy installation and high extensibility.
+GitBucket is a Git platform powered by Scala offering:
+- easy installation
+- high extensibility by plugins
+- API compatibility with Github
 
 Features
 --------
@@ -46,6 +49,8 @@ GitBucket has the plug-in system to extend GitBucket from outside of GitBucket.
 - [gitbucket-desktopnotify-plugin](https://github.com/yoshiyoshifujii/gitbucket-desktopnotify-plugin)
 - [gitbucket-commitgraphs-plugin](https://github.com/yoshiyoshifujii/gitbucket-commitgraphs-plugin)
 - [gitbucket-asciidoctor-plugin](https://github.com/lefou/gitbucket-asciidoctor-plugin)
+- [gitbucket-network-plugin](https://github.com/mrkm4ntr/gitbucket-network-plugin)
+- [gitbucket-emoji-plugin](https://github.com/gitbucket/gitbucket-emoji-plugin)
 
 You can find community plugins other than them at [gitbucket community plugins](http://gitbucket-plugins.github.io/).
 
@@ -56,10 +61,101 @@ Support
 - Make sure check whether there is a same question or request in the past.
 - When raise a new issue, write subject in **English** at least.
 - We can also support in Japaneses other than English at [gitter room for Japanese](https://gitter.im/gitbucket/gitbucket_ja).
-- First priority of GitBucket is easy installation and reproduce GitHub behavior, so we might reject if your request is against it.
+- First priority of GitBucket is easy installation and API compatibility with GitHub, so we might reject if your request is against it.
 
 Release Notes
---------
+-------------
+## 4.8 - 23 Dec 2016
+- Search for repository names from the global header
+- Filter repositories on the sidebar of the dashboard
+- Search issues and wiki
+- Keep pull request comments after new commits are pushed
+- New web API to get a single issue
+- Performance improvement for the repository viewer
+
+### 4.7.1 - 28 Nov 2016
+- Bug fix: group repositories are not shown in the your repositories list on the sidebar
+- Small performance improvement of the dashboard
+
+### 4.7 - 26 Nov 2016
+- New permission system
+- Dropdown filter for issue labels, milestones and assignees
+- Keep sidebar folding status
+- Link from milestone label to the issue list
+
+### 4.6 - 29 Oct 2016
+- Add disable option for forking
+- Add History button to wiki page
+- Git repository URL redirection for GitHub compatibility
+- Get-Content API improvement
+- Indicate who is group master in Members tab in group view
+
+### 4.5 - 29 Sep 2016
+- Attach files by dropping into textarea
+- Issues / Pull requests switcher in dashboard
+- HikariCP could be configured in `GITBUCKET_HOME/database.conf`
+- Improve Cookie security
+- Display commit count on the history button
+- Improve mobile view
+
+### 4.4 - 28 Aug 2016
+- Import a SQL dump file to the database
+- `go get` support in private repositories
+- Sort milestones by due date
+- apache-sshd has been updated to 1.2.0
+
+### 4.3 - 30 Jul 2016
+- Emoji support by [gitbucket-emoji-plugin](https://github.com/gitbucket/gitbucket-emoji-plugin)
+- User name suggestion
+- Add new web APIs and basic authentication support for API access
+- Root Endpoint
+  - [List endpoints](https://developer.github.com/v3/#root-endpoint)
+  - [List Branches](https://developer.github.com/v3/repos/branches/#list-branches)
+  - [Get contents](https://developer.github.com/v3/repos/contents/#get-contents)
+  - [Get a Reference](https://developer.github.com/v3/git/refs/#get-a-reference)
+  - [List Collaborators](https://developer.github.com/v3/repos/collaborators/#list-collaborators)
+  - [List user repositories](https://developer.github.com/v3/repos/#list-user-repositories)
+  - [Get a group](https://developer.github.com/v3/orgs/#get-an-organization)
+  - [List group repositories](https://developer.github.com/v3/repos/#list-organization-repositories)
+- Add new extension points
+  - `assetsMapping` : Supplies resources in plugin classpath as web assets
+  - `suggestionProvider` : Provides suggestion in the Markdown editing textarea 
+  - `textDecorator` : Decorate text nodes in HTML which is converted from Markdown
+
+### 4.2.1 - 3 Jul 2016
+- Fix migration bug
+
+This is hotfix for a critical bug in migration. If you are new installation, use 4.2.0. But if you have an exisiting installation and it had been updated to 4.0 from 3.x, you must update to 4.2.1.
+
+### 4.2 - 2 Jul 2016
+- New UI based on [AdminLTE](https://github.com/almasaeed2010/AdminLTE)
+- git gc
+- Issues and Wiki have been possible to be disabled
+- SMTP configuration test mail
+
+### 4.1 - 4 Jun 2016
+- Generic ssh user
+- Improve branch protection UI
+- Default value of pull request title
+
+### 4.0 - 30 Apr 2016
+- MySQL and PostgreSQL support
+- Data export and import
+- Migration system has been switched to [solidbase](https://github.com/gitbucket/solidbase)
+
+**Note:** You can upgrade to GitBucket 4.0 from 3.14. If your GitBucket is 3.13 or before, you have to upgrade 3.14 at first.
+
+### 3.14 - 30 Apr 2016
+- File attachment and search for wiki pages
+- New extension points to add menus
+- Content-Type of webhooks has been choosable
+
+### 3.13 - 1 Apr 2016
+- Refresh user interface for wide screen
+- Add `pull_request` key in list issues API for pull requests
+- Add `X-Hub-Signature` security to webhooks
+- Provide SHA-256 checksum for `gitbucket.war`
+
 ### 3.12 - 27 Feb 2016
 - New GitHub UI
 - Improve mobile view

build.sbt

@@ -1,8 +1,8 @@
-val Organization = "gitbucket"
+val Organization = "io.github.gitbucket"
 val Name = "gitbucket"
-val GitBucketVersion = "3.12.0"
-val ScalatraVersion = "2.4.0"
-val JettyVersion = "9.3.6.v20151106"
+val GitBucketVersion = "4.8"
+val ScalatraVersion = "2.4.1"
+val JettyVersion = "9.3.9.v20160517"
 
 lazy val root = (project in file(".")).enablePlugins(SbtTwirl, JettyPlugin)
 
@@ -10,54 +10,65 @@ sourcesInBase := false
 organization := Organization
 name := Name
 version := GitBucketVersion
-scalaVersion := "2.11.7"
+scalaVersion := "2.11.8"
 
 // dependency settings
 resolvers ++= Seq(
   Classpaths.typesafeReleases,
-  "sonatype-snapshot" at "https://oss.sonatype.org/content/repositories/snapshots/"
+  Resolver.jcenterRepo,
+  "amateras" at "http://amateras.sourceforge.jp/mvn/",
+  "sonatype-snapshot" at "https://oss.sonatype.org/content/repositories/snapshots/",
+  "amateras-snapshot" at "http://amateras.sourceforge.jp/mvn-snapshot/"
 )
 libraryDependencies ++= Seq(
-  "org.eclipse.jgit"          % "org.eclipse.jgit.http.server" % "4.1.1.201511131810-r",
-  "org.eclipse.jgit"          % "org.eclipse.jgit.archive"     % "4.1.1.201511131810-r",
+  "org.scala-lang.modules"   %% "scala-java8-compat"           % "0.7.0",
+  "org.eclipse.jgit"          % "org.eclipse.jgit.http.server" % "4.1.2.201602141800-r",
+  "org.eclipse.jgit"          % "org.eclipse.jgit.archive"     % "4.1.2.201602141800-r",
   "org.scalatra"             %% "scalatra"                     % ScalatraVersion,
   "org.scalatra"             %% "scalatra-json"                % ScalatraVersion,
   "org.json4s"               %% "json4s-jackson"               % "3.3.0",
   "io.github.gitbucket"      %% "scalatra-forms"               % "1.0.0",
   "commons-io"                % "commons-io"                   % "2.4",
-  "io.github.gitbucket"       % "markedj"                      % "1.0.7",
-  "org.apache.commons"        % "commons-compress"             % "1.10",
+  "io.github.gitbucket"       % "solidbase"                    % "1.0.0",
+  "io.github.gitbucket"       % "markedj"                      % "1.0.9",
+  "org.apache.commons"        % "commons-compress"             % "1.11",
   "org.apache.commons"        % "commons-email"                % "1.4",
   "org.apache.httpcomponents" % "httpclient"                   % "4.5.1",
-  "org.apache.sshd"           % "apache-sshd"                  % "1.0.0",
-  "org.apache.tika"           % "tika-core"                    % "1.11",
+  "org.apache.sshd"           % "apache-sshd"                  % "1.2.0",
+  "org.apache.tika"           % "tika-core"                    % "1.13",
   "com.typesafe.slick"       %% "slick"                        % "2.1.0",
   "com.novell.ldap"           % "jldap"                        % "2009-10-07",
-  "com.h2database"            % "h2"                           % "1.4.190",
-  "ch.qos.logback"            % "logback-classic"              % "1.1.1",
-  "com.mchange"               % "c3p0"                         % "0.9.5.2",
+  "com.h2database"            % "h2"                           % "1.4.192",
+  "mysql"                     % "mysql-connector-java"         % "5.1.39",
+  "org.postgresql"            % "postgresql"                   % "9.4.1208",
+  "ch.qos.logback"            % "logback-classic"              % "1.1.7",
+  "com.zaxxer"                % "HikariCP"                     % "2.4.6",
   "com.typesafe"              % "config"                       % "1.3.0",
-  "com.typesafe.akka"        %% "akka-actor"                   % "2.3.14",
+  "com.typesafe.akka"        %% "akka-actor"                   % "2.3.15",
   "fr.brouillard.oss.security.xhub" % "xhub4j-core"            % "1.0.0",
+  "com.github.bkromhout"      % "java-diff-utils"              % "2.1.1",
+  "org.cache2k"               % "cache2k-all"                  % "1.0.0.CR1",
   "com.enragedginger"        %% "akka-quartz-scheduler"        % "1.4.0-akka-2.3.x" exclude("c3p0","c3p0"),
   "org.eclipse.jetty"         % "jetty-webapp"                 % JettyVersion     % "provided",
   "javax.servlet"             % "javax.servlet-api"            % "3.1.0"          % "provided",
   "junit"                     % "junit"                        % "4.12"           % "test",
   "org.scalatra"             %% "scalatra-scalatest"           % ScalatraVersion  % "test",
-  "org.scalaz"               %% "scalaz-core"                  % "7.2.0"          % "test"
+  "com.wix"                   % "wix-embedded-mysql"           % "1.0.3"          % "test",
+  "ru.yandex.qatools.embed"   % "postgresql-embedded"          % "1.14"           % "test"
 )
 
-// Twirl settings
-play.twirl.sbt.Import.TwirlKeys.templateImports += "gitbucket.core._"
-
 // Compiler settings
-scalacOptions := Seq("-deprecation", "-language:postfixOps")
+scalacOptions := Seq("-deprecation", "-language:postfixOps", "-Ybackend:GenBCode", "-Ydelambdafy:method", "-target:jvm-1.8")
 javacOptions in compile ++= Seq("-target", "8", "-source", "8")
 javaOptions in Jetty += "-Dlogback.configurationFile=/logback-dev.xml"
-testOptions in Test += Tests.Argument(TestFrameworks.Specs2, "junitxml", "console")
+
+// Test settings
+//testOptions in Test += Tests.Argument("-l", "ExternalDBTest")
 javaOptions in Test += "-Dgitbucket.home=target/gitbucket_home_for_test"
 testOptions in Test += Tests.Setup( () => new java.io.File("target/gitbucket_home_for_test").mkdir() )
 fork in Test := true
+
+// Packaging options
 packageOptions += Package.MainClass("JettyLauncher")
 
 // Assembly settings
@@ -72,12 +83,13 @@ assemblyMergeStrategy in assembly := {
 }
 
 // JRebel
+Seq(jrebelSettings: _*)
+
 jrebel.webLinks += (target in webappPrepare).value
 jrebel.enabled := System.getenv().get("JREBEL") != null
 javaOptions in Jetty ++= Option(System.getenv().get("JREBEL")).toSeq.flatMap { path =>
   Seq("-noverify", "-XX:+UseConcMarkSweepGC", "-XX:+CMSClassUnloadingEnabled", s"-javaagent:${path}")
 }
-jrebelSettings
 
 // Create executable war file
 val executableConfig = config("executable").hide
@@ -96,7 +108,6 @@ libraryDependencies ++= Seq(
 
 val executableKey = TaskKey[File]("executable")
 executableKey := {
-  import org.apache.ivy.util.ChecksumHelper
   import java.util.jar.{ Manifest => JarManifest }
   import java.util.jar.Attributes.{ Name => AttrName }
 
@@ -154,9 +165,55 @@ executableKey := {
   log info s"built executable webapp ${outputFile}"
   outputFile
 }
-/*
-Keys.artifact in (Compile, executableKey) ~= {
-    _ copy (`type` = "war", extension = "war"))
+publishTo <<= version { (v: String) =>
+  val nexus = "https://oss.sonatype.org/"
+  if (v.trim.endsWith("SNAPSHOT")) Some("snapshots" at nexus + "content/repositories/snapshots")
+  else                             Some("releases"  at nexus + "service/local/staging/deploy/maven2")
 }
-addArtifact(Keys.artifact in (Compile, executableKey), executableKey)
-*/
+publishMavenStyle := true
+pomIncludeRepository := { _ => false }
+pomExtra := (
+  <url>https://github.com/gitbucket/gitbucket</url>
+  <licenses>
+    <license>
+      <name>The Apache Software License, Version 2.0</name>
+      <url>http://www.apache.org/licenses/LICENSE-2.0.txt</url>
+    </license>
+  </licenses>
+  <scm>
+    <url>https://github.com/gitbucket/gitbucket</url>
+    <connection>scm:git:https://github.com/gitbucket/gitbucket.git</connection>
+  </scm>
+  <developers>
+    <developer>
+      <id>takezoe</id>
+      <name>Naoki Takezoe</name>
+      <url>https://github.com/takezoe</url>
+    </developer>
+    <developer>
+      <id>shimamoto</id>
+      <name>Takako Shimamoto</name>
+      <url>https://github.com/shimamoto</url>
+    </developer>
+    <developer>
+      <id>tanacasino</id>
+      <name>Tomofumi Tanaka</name>
+      <url>https://github.com/tanacasino</url>
+    </developer>
+    <developer>
+      <id>mrkm4ntr</id>
+      <name>Shintaro Murakami</name>
+      <url>https://github.com/mrkm4ntr</url>
+    </developer>
+    <developer>
+      <id>nazoking</id>
+      <name>nazoking</name>
+      <url>https://github.com/nazoking</url>
+    </developer>
+    <developer>
+      <id>McFoggy</id>
+      <name>Matthieu Brouillard</name>
+      <url>https://github.com/McFoggy</url>
+    </developer>
+  </developers>
+)

doc/auto_update.md

@@ -1,37 +1,54 @@
 Automatic Schema Updating
 ========
-GitBucket uses H2 database to manage project and account data. GitBucket updates database schema automatically in the first run after the upgrading.
+GitBucket updates database schema automatically using [Solidbase](https://github.com/gitbucket/solidbase) in the first run after the upgrading.
 
-To release a new version of GitBucket, add the version definition to the [gitbucket.core.servlet.AutoUpdate](https://github.com/gitbucket/gitbucket/blob/master/src/main/scala/gitbucket/core/servlet/AutoUpdate.scala) at first.
+To release a new version of GitBucket, add the version definition to the [gitbucket.core.GitBucketCoreModule](https://github.com/gitbucket/gitbucket/blob/master/src/main/scala/gitbucket/core/GitBucketCoreModule.scala) at first.
 
 ```scala
-object AutoUpdate {
-  ...
-  /**
-   * The history of versions. A head of this sequence is the current GitBucket version.
-   */
-  val versions = Seq(
-      Version(1, 0)
+object GitBucketCoreModule extends Module("gitbucket-core",
+  new Version("4.0.0",
+    new LiquibaseMigration("update/gitbucket-core_4.0.xml"),
+    new SqlMigration("update/gitbucket-core_4.0.sql")
+  ),
+  new Version("4.1.0"),
+  new Version("4.2.0",
+    new LiquibaseMigration("update/gitbucket-core_4.2.xml")
   )
-  ...
-```
-
-Next, add a SQL file which updates database schema into [/src/main/resources/update/](https://github.com/gitbucket/gitbucket/tree/master/src/main/resources/update) as ```MAJOR_MINOR.sql```.
-
-GitBucket stores the current version to ```GITBUCKET_HOME/version``` and checks it at start-up. If the stored version differs from the actual version, it executes differences of SQL files between the stored version and the actual version. And ```GITBUCKET_HOME/version``` is updated by the actual version.
-
-We can also add any Scala code for upgrade GitBucket which modifies resources other than database. Override ```Version.update``` like below:
-
-```scala
-val versions = Seq(
-  new Version(1, 3){
-    override def update(conn: Connection): Unit = {
-      super.update(conn)
-      // Add any code here!
-    }
-  },
-  Version(1, 2),
-  Version(1, 1),
-  Version(1, 0)
 )
 ```
+
+Next, add a XML file which updates database schema into [/src/main/resources/update/](https://github.com/gitbucket/gitbucket/tree/master/src/main/resources/update) with a filenane defined in `GitBucketCoreModule`.
+
+```xml
+<?xml version="1.0" encoding="UTF-8"?>
+<changeSet>
+    <addColumn tableName="REPOSITORY">
+        <column name="ENABLE_WIKI" type="boolean" nullable="false" defaultValueBoolean="true"/>
+        <column name="ENABLE_ISSUES" type="boolean" nullable="false" defaultValueBoolean="true"/>
+        <column name="EXTERNAL_WIKI_URL" type="varchar(200)" nullable="true"/>
+        <column name="EXTERNAL_ISSUES_URL" type="varchar(200)" nullable="true"/>
+    </addColumn>
+</changeSet>
+```
+
+Solidbase stores the current version to `VERSIONS` table and checks it at start-up. If the stored version differs from the actual version, it executes differences between the stored version and the actual version.
+
+We can add the SQL file instead of the XML file using `SqlMigration`. It try to load a SQL file from classpath as following order:
+
+1. Specified path (if specified)
+2. `${moduleId}_${version}_${database}.sql`
+3. `${moduleId}_${version}.sql`
+
+Also we can add any code by extending `Migration`:
+
+```scala
+object GitBucketCoreModule extends Module("gitbucket-core",
+  new Version("4.0.0", new Migration(){
+    override def migrate(moduleId: String, version: String, context: java.util.Map[String, String]): Unit = {
+      ...
+    }
+  })
+)
+```
+
+See more details [README of Solidbase](https://github.com/gitbucket/solidbase).

doc/release.md

@@ -11,22 +11,24 @@ Note to update version number in files below:
 ```scala
 val Organization = "gitbucket"
 val Name = "gitbucket"
-val GitBucketVersion = "3.12.0" // <---- update version!!
+val GitBucketVersion = "4.0.0" // <---- update version!!
 val ScalatraVersion = "2.4.0"
 val JettyVersion = "9.3.6.v20151106"
 ```
 
-### src/main/scala/gitbucket/core/servlet/AutoUpdate.scala
+### src/main/scala/gitbucket/core/GitBucketCoreModule.scala
 
 ```scala
-object AutoUpdate {
-
-  /**
-   * The history of versions. A head of this sequence is the current GitBucket version.
-   */
-  val versions = Seq(
-    new Version(3, 12), // <---- add this line!!
-    new Version(3, 11),
+object GitBucketCoreModule extends Module("gitbucket-core",
+  new Version("4.0.0",
+    new LiquibaseMigration("update/gitbucket-core_4.0.xml"),
+    new SqlMigration("update/gitbucket-core_4.0.sql")
+  ),
+  // add new version definition
+  new Version("4.1.0",
+    new LiquibaseMigration("update/gitbucket-core_4.1.xml")
+  )
+)
 ```
 
 Generate release files
@@ -39,14 +41,15 @@ Note: Release operation requires [Ant](http://ant.apache.org/) and [Maven](https
 Run `sbt executable`. The release war file and fingerprint are generated into `target/executable/gitbucket.war`.
 
 ```bash
-$sbt executable
+$ sbt executable
 ```
 
 ### Deploy assembly jar file
 
-For plug-in development, we have to publish the assembly jar file to the public Maven repository by `release/deploy-assembly-jar.sh`.
+For plug-in development, we have to publish the GitBucket jar file to the Maven central repository as well. At first, hit following command to publish artifacts to the sonatype OSS repository:
 
 ```bash
-$ cd release/
-$ ./deploy-assembly-jar.sh
+$ sbt publish-signed
 ```
+
+Then operate release sequence at https://oss.sonatype.org/.

project/build.properties

@@ -1 +1 @@
-sbt.version=0.13.9
+sbt.version=0.13.12

project/plugins.sbt

@@ -1,6 +1,7 @@
 scalacOptions ++= Seq("-unchecked", "-deprecation", "-feature")
 
-addSbtPlugin("com.typesafe.sbt" % "sbt-twirl"       % "1.0.4")
-addSbtPlugin("com.eed3si9n"     % "sbt-assembly"    % "0.12.0")
-addSbtPlugin("com.earldouglas"  % "xsbt-web-plugin" % "2.1.0")
+addSbtPlugin("com.typesafe.sbt"     % "sbt-twirl"         % "1.0.4")
+addSbtPlugin("com.eed3si9n"         % "sbt-assembly"      % "0.12.0")
+addSbtPlugin("com.earldouglas"      % "xsbt-web-plugin"   % "2.1.0")
 addSbtPlugin("fi.gekkio.sbtplugins" % "sbt-jrebel-plugin" % "0.10.0")
+addSbtPlugin("com.typesafe.sbt"     % "sbt-pgp"           % "0.8.3")

release/deploy-assembly-jar.sh

@@ -1,24 +0,0 @@
-#!/bin/sh
-. ./env.sh
-
-cd ../
-./sbt.sh clean assembly
-
-cd release
-
-if [[ "$GITBUCKET_VERSION" =~ -SNAPSHOT$ ]]; then
-  MVN_DEPLOY_PATH=mvn-snapshot
-else
-  MVN_DEPLOY_PATH=mvn
-fi
-
-echo $MVN_DEPLOY_PATH
-
-mvn deploy:deploy-file \
-  -DgroupId=gitbucket\
-  -DartifactId=gitbucket-assembly\
-  -Dversion=$GITBUCKET_VERSION\
-  -Dpackaging=jar\
-  -Dfile=../target/scala-2.11/gitbucket-assembly-$GITBUCKET_VERSION.jar\
-  -DrepositoryId=sourceforge.jp\
-  -Durl=scp://shell.sourceforge.jp/home/groups/a/am/amateras/htdocs/$MVN_DEPLOY_PATH/

release/env.sh

@@ -1,3 +0,0 @@
-#!/bin/sh
-export GITBUCKET_VERSION=`cat ../build.sbt | grep 'val GitBucketVersion' | cut -d \" -f 2`
-echo "GITBUCKET_VERSION: $GITBUCKET_VERSION"

release/pom.xml

@@ -1,17 +0,0 @@
-<?xml version="1.0"?>
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
-    <modelVersion>4.0.0</modelVersion>
-    <groupId>jp.sf.amateras</groupId>
-    <artifactId>gitbucket-assembly</artifactId>
-    <version>0.0.1</version>
-    <build>
-        <extensions>
-            <extension>
-                <groupId>org.apache.maven.wagon</groupId>
-                <artifactId>wagon-ssh</artifactId>
-                <version>1.0-beta-6</version>
-            </extension>
-        </extensions>
-    </build>
-</project>

sbt.bat

@@ -1,2 +1,2 @@
 set SCRIPT_DIR=%~dp0
-java %JAVA_OPTS% -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -XX:MaxPermSize=256m -Xmx512M -Xss2M -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005 -jar "%SCRIPT_DIR%\sbt-launch-0.13.9.jar" %*
+java %JAVA_OPTS% -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -Xmx512M -Xss2M -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005 -jar "%SCRIPT_DIR%\sbt-launch-0.13.12.jar" %*

sbt.sh

@@ -1,2 +1,2 @@
 #!/bin/sh
-java $JAVA_OPTS -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -XX:MaxPermSize=256m -Xmx512M -Xss2M -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005 -jar `dirname $0`/sbt-launch-0.13.9.jar "$@"
+java $JAVA_OPTS -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -Xmx512M -Xss2M -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005 -jar `dirname $0`/sbt-launch-0.13.12.jar "$@"

src/main/java/JettyLauncher.java

@@ -3,12 +3,14 @@ import org.eclipse.jetty.webapp.WebAppContext;
 
 import java.io.File;
 import java.net.URL;
+import java.net.InetSocketAddress;
 import java.security.ProtectionDomain;
 
 public class JettyLauncher {
     public static void main(String[] args) throws Exception {
         String host = null;
         int port = 8080;
+        InetSocketAddress address = null;
         String contextPath = "/";
         boolean forceHttps = false;
 
@@ -29,7 +31,13 @@ public class JettyLauncher {
             }
         }
 
-        Server server = new Server(port);
+        if(host != null) {
+            address = new InetSocketAddress(host, port);
+        } else {
+            address = new InetSocketAddress(port);
+        }
+
+        Server server = new Server(address);
 
 //        SelectChannelConnector connector = new SelectChannelConnector();
 //        if(host != null) {
@@ -43,10 +51,9 @@ public class JettyLauncher {
         WebAppContext context = new WebAppContext();
 
         File tmpDir = new File(getGitBucketHome(), "tmp");
-        if(tmpDir.exists()){
-            deleteDirectory(tmpDir);
+        if(!tmpDir.exists()){
+            tmpDir.mkdirs();
         }
-        tmpDir.mkdirs();
         context.setTempDirectory(tmpDir);
 
         ProtectionDomain domain = JettyLauncher.class.getProtectionDomain();
@@ -61,6 +68,8 @@ public class JettyLauncher {
         }
 
         server.setHandler(context);
+        server.setStopAtShutdown(true);
+        server.setStopTimeout(7_000);
         server.start();
         server.join();
     }

src/main/java/org/postgresql/Driver2.java

@@ -0,0 +1,52 @@
+package org.postgresql;
+
+import java.lang.reflect.InvocationHandler;
+import java.lang.reflect.Method;
+import java.lang.reflect.Proxy;
+import java.sql.Connection;
+import java.sql.SQLException;
+import java.util.Properties;
+
+/**
+ * Wraps the PostgreSQL JDBC driver to convert the returning column names to lower case.
+ */
+public class Driver2 extends Driver {
+
+    @Override
+    public java.sql.Connection connect(String url, Properties info) throws SQLException {
+        Connection conn =  super.connect(url, info);
+
+        Object proxy = Proxy.newProxyInstance(
+                conn.getClass().getClassLoader(),
+                new Class[]{ Connection.class },
+                new ConnectionProxyHandler(conn)
+        );
+
+        return Connection.class.cast(proxy);
+    }
+
+
+    private static class ConnectionProxyHandler implements InvocationHandler {
+
+        private Connection conn;
+
+        public ConnectionProxyHandler(Connection conn){
+            this.conn = conn;
+        }
+
+        @Override
+        public Object invoke(Object proxy, Method method, Object[] args) throws Throwable {
+            if(method.getName().equals("prepareStatement")){
+                if(args != null && args.length == 2 && args[1].getClass().isArray()){
+                    String[] keys = (String[]) args[1];
+                    for(int i = 0; i < keys.length; i++){
+                        keys[i] = keys[i].toLowerCase();
+                    }
+                }
+            }
+            return method.invoke(conn, args);
+        }
+    }
+
+}
+

src/main/resources/database.conf

@@ -1,6 +0,0 @@
-db {
-  driver = "org.h2.Driver"
-  url = "jdbc:h2:${DatabaseHome};MVCC=true"
-  user = "sa"
-  password = "sa"
-}

src/main/resources/logback-dev.xml

@@ -20,7 +20,7 @@
   <!--
   <logger name="service.WebHookService" level="DEBUG" />
   <logger name="servlet" level="DEBUG" />
-  -->
   <logger name="scala.slick.jdbc.JdbcBackend.statement" level="DEBUG" />
+  -->
 
 </configuration>

src/main/resources/reference.conf

@@ -1,5 +0,0 @@
-c3p0 {
-  privilegeSpawnedThreads=true
-  contextClassLoaderSource=library
-}
-

src/main/resources/update/1_0.sql

@@ -1,135 +0,0 @@
-CREATE TABLE ACCOUNT(
-		USER_NAME VARCHAR(100) NOT NULL,
-		MAIL_ADDRESS VARCHAR(100) NOT NULL,
-		PASSWORD VARCHAR(40) NOT NULL,
-		ADMINISTRATOR BOOLEAN NOT NULL,
-		URL VARCHAR(200),
-		REGISTERED_DATE TIMESTAMP NOT NULL,
-		UPDATED_DATE TIMESTAMP NOT NULL,
-		LAST_LOGIN_DATE TIMESTAMP
-);
-
-CREATE TABLE REPOSITORY(
-		USER_NAME VARCHAR(100) NOT NULL,
-		REPOSITORY_NAME VARCHAR(100) NOT NULL,
-		PRIVATE BOOLEAN NOT NULL,
-		DESCRIPTION TEXT,
-		DEFAULT_BRANCH VARCHAR(100),
-		REGISTERED_DATE TIMESTAMP NOT NULL,
-		UPDATED_DATE TIMESTAMP NOT NULL,
-		LAST_ACTIVITY_DATE TIMESTAMP NOT NULL
-);
-
-CREATE TABLE COLLABORATOR(
-		USER_NAME VARCHAR(100) NOT NULL,
-		REPOSITORY_NAME VARCHAR(100) NOT NULL,
-		COLLABORATOR_NAME VARCHAR(100) NOT NULL
-);
-
-CREATE TABLE ISSUE(
-		USER_NAME VARCHAR(100) NOT NULL,
-		REPOSITORY_NAME VARCHAR(100) NOT NULL,
-		ISSUE_ID INT NOT NULL,
-		OPENED_USER_NAME VARCHAR(100) NOT NULL,
-		MILESTONE_ID INT,
-		ASSIGNED_USER_NAME VARCHAR(100),
-		TITLE TEXT NOT NULL,
-		CONTENT TEXT,
-		CLOSED BOOLEAN NOT NULL,
-		REGISTERED_DATE TIMESTAMP NOT NULL,
-		UPDATED_DATE TIMESTAMP NOT NULL
-);
-
-CREATE TABLE ISSUE_ID(
-		USER_NAME VARCHAR(100) NOT NULL,
-		REPOSITORY_NAME VARCHAR(100) NOT NULL,
-		ISSUE_ID INT NOT NULL
-);
-
-CREATE TABLE ISSUE_COMMENT(
-		USER_NAME VARCHAR(100) NOT NULL,
-		REPOSITORY_NAME VARCHAR(100) NOT NULL,
-		ISSUE_ID INT NOT NULL,
-		COMMENT_ID INT AUTO_INCREMENT,
-		ACTION VARCHAR(10),
-		COMMENTED_USER_NAME VARCHAR(100) NOT NULL,
-		CONTENT TEXT NOT NULL,
-		REGISTERED_DATE TIMESTAMP NOT NULL,
-		UPDATED_DATE TIMESTAMP NOT NULL
-);
-
-CREATE TABLE LABEL(
-		USER_NAME VARCHAR(100) NOT NULL,
-		REPOSITORY_NAME VARCHAR(100) NOT NULL,
-		LABEL_ID INT AUTO_INCREMENT,
-		LABEL_NAME VARCHAR(100) NOT NULL,
-		COLOR CHAR(6) NOT NULL
-);
-
-CREATE TABLE ISSUE_LABEL(
-		USER_NAME VARCHAR(100) NOT NULL,
-		REPOSITORY_NAME VARCHAR(100) NOT NULL,
-		ISSUE_ID INT NOT NULL,
-		LABEL_ID INT NOT NULL
-);
-
-CREATE TABLE MILESTONE(
-		USER_NAME VARCHAR(100) NOT NULL,
-		REPOSITORY_NAME VARCHAR(100) NOT NULL,
-		MILESTONE_ID INT AUTO_INCREMENT,
-		TITLE VARCHAR(100) NOT NULL,
-		DESCRIPTION TEXT,
-		DUE_DATE TIMESTAMP,
-		CLOSED_DATE TIMESTAMP
-);
-
-ALTER TABLE ACCOUNT ADD CONSTRAINT IDX_ACCOUNT_PK PRIMARY KEY (USER_NAME);
-ALTER TABLE ACCOUNT ADD CONSTRAINT IDX_ACCOUNT_1 UNIQUE (MAIL_ADDRESS);
-
-ALTER TABLE REPOSITORY ADD CONSTRAINT IDX_REPOSITORY_PK PRIMARY KEY (USER_NAME, REPOSITORY_NAME);
-ALTER TABLE REPOSITORY ADD CONSTRAINT IDX_REPOSITORY_FK0 FOREIGN KEY (USER_NAME) REFERENCES ACCOUNT (USER_NAME);
-
-ALTER TABLE COLLABORATOR ADD CONSTRAINT IDX_COLLABORATOR_PK PRIMARY KEY (USER_NAME, REPOSITORY_NAME);
-ALTER TABLE COLLABORATOR ADD CONSTRAINT IDX_COLLABORATOR_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME) REFERENCES REPOSITORY (USER_NAME, REPOSITORY_NAME);
-ALTER TABLE COLLABORATOR ADD CONSTRAINT IDX_COLLABORATOR_FK1 FOREIGN KEY (COLLABORATOR_NAME) REFERENCES ACCOUNT (USER_NAME);
-
-ALTER TABLE ISSUE ADD CONSTRAINT IDX_ISSUE_PK PRIMARY KEY (ISSUE_ID, USER_NAME, REPOSITORY_NAME);
-ALTER TABLE ISSUE ADD CONSTRAINT IDX_ISSUE_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME) REFERENCES REPOSITORY (USER_NAME, REPOSITORY_NAME);
-ALTER TABLE ISSUE ADD CONSTRAINT IDX_ISSUE_FK1 FOREIGN KEY (OPENED_USER_NAME) REFERENCES ACCOUNT (USER_NAME);
-ALTER TABLE ISSUE ADD CONSTRAINT IDX_ISSUE_FK2 FOREIGN KEY (MILESTONE_ID) REFERENCES MILESTONE (MILESTONE_ID);
-
-ALTER TABLE ISSUE_ID ADD CONSTRAINT IDX_ISSUE_ID_PK PRIMARY KEY (USER_NAME, REPOSITORY_NAME);
-ALTER TABLE ISSUE_ID ADD CONSTRAINT IDX_ISSUE_ID_FK1 FOREIGN KEY (USER_NAME, REPOSITORY_NAME) REFERENCES REPOSITORY (USER_NAME, REPOSITORY_NAME);
-
-ALTER TABLE ISSUE_COMMENT ADD CONSTRAINT IDX_ISSUE_COMMENT_PK PRIMARY KEY (COMMENT_ID);
-ALTER TABLE ISSUE_COMMENT ADD CONSTRAINT IDX_ISSUE_COMMENT_1 UNIQUE (USER_NAME, REPOSITORY_NAME, ISSUE_ID, COMMENT_ID);
-ALTER TABLE ISSUE_COMMENT ADD CONSTRAINT IDX_ISSUE_COMMENT_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME, ISSUE_ID) REFERENCES ISSUE (USER_NAME, REPOSITORY_NAME, ISSUE_ID);
-
-ALTER TABLE LABEL ADD CONSTRAINT IDX_LABEL_PK PRIMARY KEY (USER_NAME, REPOSITORY_NAME, LABEL_ID);
-ALTER TABLE LABEL ADD CONSTRAINT IDX_LABEL_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME) REFERENCES REPOSITORY (USER_NAME, REPOSITORY_NAME);
-
-ALTER TABLE ISSUE_LABEL ADD CONSTRAINT IDX_ISSUE_LABEL_PK PRIMARY KEY (USER_NAME, REPOSITORY_NAME, ISSUE_ID, LABEL_ID);
-ALTER TABLE ISSUE_LABEL ADD CONSTRAINT IDX_ISSUE_LABEL_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME, ISSUE_ID) REFERENCES ISSUE (USER_NAME, REPOSITORY_NAME, ISSUE_ID);
-
-ALTER TABLE MILESTONE ADD CONSTRAINT IDX_MILESTONE_PK PRIMARY KEY (USER_NAME, REPOSITORY_NAME, MILESTONE_ID);
-ALTER TABLE MILESTONE ADD CONSTRAINT IDX_MILESTONE_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME) REFERENCES REPOSITORY (USER_NAME, REPOSITORY_NAME);
-
-INSERT INTO ACCOUNT (
-  USER_NAME,
-  MAIL_ADDRESS,
-  PASSWORD,
-  ADMINISTRATOR,
-  URL,
-  REGISTERED_DATE,
-  UPDATED_DATE,
-  LAST_LOGIN_DATE
-) VALUES (
-  'root',
-  'root@localhost',
-  'dc76e9f0c0006e8f919e0c515c66dbba3982f785',
-  true,
-  'https://github.com/gitbucket/gitbucket',
-  SYSDATE,
-  SYSDATE,
-  NULL
-);

src/main/resources/update/1_1.sql

@@ -1,8 +0,0 @@
--- Fix COLLABORATOR constraints
-ALTER TABLE COLLABORATOR DROP CONSTRAINT IDX_COLLABORATOR_FK1 IF EXISTS;
-ALTER TABLE COLLABORATOR DROP CONSTRAINT IDX_COLLABORATOR_FK0 IF EXISTS;
-ALTER TABLE COLLABORATOR DROP CONSTRAINT IDX_COLLABORATOR_PK IF EXISTS;
-
-ALTER TABLE COLLABORATOR ADD CONSTRAINT IDX_COLLABORATOR_PK PRIMARY KEY (USER_NAME, REPOSITORY_NAME, COLLABORATOR_NAME);
-ALTER TABLE COLLABORATOR ADD CONSTRAINT IDX_COLLABORATOR_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME) REFERENCES REPOSITORY (USER_NAME, REPOSITORY_NAME);
-ALTER TABLE COLLABORATOR ADD CONSTRAINT IDX_COLLABORATOR_FK1 FOREIGN KEY (COLLABORATOR_NAME) REFERENCES ACCOUNT (USER_NAME);

src/main/resources/update/1_12.sql

@@ -1,11 +0,0 @@
-ALTER TABLE GROUP_MEMBER ADD COLUMN MANAGER BOOLEAN DEFAULT FALSE;
-
-CREATE TABLE SSH_KEY (
-  USER_NAME VARCHAR(100) NOT NULL,
-  SSH_KEY_ID INT AUTO_INCREMENT,
-  TITLE VARCHAR(100) NOT NULL,
-  PUBLIC_KEY TEXT NOT NULL
-);
-
-ALTER TABLE SSH_KEY ADD CONSTRAINT IDX_SSH_KEY_PK PRIMARY KEY (USER_NAME, SSH_KEY_ID);
-ALTER TABLE SSH_KEY ADD CONSTRAINT IDX_SSH_KEY_FK0 FOREIGN KEY (USER_NAME) REFERENCES ACCOUNT (USER_NAME);

src/main/resources/update/1_13.sql

@@ -1 +0,0 @@
-DROP TABLE COMMIT_LOG;

src/main/resources/update/1_2.sql

@@ -1,24 +0,0 @@
-CREATE TABLE ACTIVITY(
-		ACTIVITY_ID INT AUTO_INCREMENT,
-		USER_NAME VARCHAR(100) NOT NULL,
-		REPOSITORY_NAME VARCHAR(100) NOT NULL,
-		ACTIVITY_USER_NAME VARCHAR(100) NOT NULL,
-		ACTIVITY_TYPE VARCHAR(100) NOT NULL,
-		MESSAGE TEXT NOT NULL,
-		ADDITIONAL_INFO TEXT,
-		ACTIVITY_DATE TIMESTAMP NOT NULL
-);
-
-CREATE TABLE COMMIT_LOG (
-		USER_NAME VARCHAR(100) NOT NULL,
-		REPOSITORY_NAME VARCHAR(100) NOT NULL,
-		COMMIT_ID VARCHAR(40) NOT NULL
-);
-
-ALTER TABLE ACTIVITY ADD CONSTRAINT IDX_ACTIVITY_PK PRIMARY KEY (ACTIVITY_ID);
-ALTER TABLE ACTIVITY ADD CONSTRAINT IDX_ACTIVITY_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME) REFERENCES REPOSITORY (USER_NAME, REPOSITORY_NAME);
-ALTER TABLE ACTIVITY ADD CONSTRAINT IDX_ACTIVITY_FK1 FOREIGN KEY (ACTIVITY_USER_NAME) REFERENCES ACCOUNT (USER_NAME);
-
-ALTER TABLE COMMIT_LOG ADD CONSTRAINT IDX_COMMIT_LOG_PK PRIMARY KEY (USER_NAME, REPOSITORY_NAME, COMMIT_ID);
-ALTER TABLE COMMIT_LOG ADD CONSTRAINT IDX_COMMIT_LOG_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME) REFERENCES REPOSITORY (USER_NAME, REPOSITORY_NAME);
-

src/main/resources/update/1_3.sql

@@ -1,8 +0,0 @@
-ALTER TABLE ACCOUNT ADD COLUMN IMAGE VARCHAR(100);
-
-UPDATE ISSUE_COMMENT SET ACTION = 'comment' WHERE ACTION IS NULL;
-
-ALTER TABLE ISSUE_COMMENT ALTER COLUMN ACTION VARCHAR(20) NOT NULL;
-
-UPDATE ISSUE_COMMENT SET ACTION = 'close_comment'  WHERE ACTION = 'close';
-UPDATE ISSUE_COMMENT SET ACTION = 'reopen_comment' WHERE ACTION = 'reopen';

src/main/resources/update/1_4.sql

@@ -1,24 +0,0 @@
-CREATE TABLE GROUP_MEMBER(
-  GROUP_NAME VARCHAR(100) NOT NULL,
-  USER_NAME  VARCHAR(100) NOT NULL
-);
-
-ALTER TABLE GROUP_MEMBER ADD CONSTRAINT IDX_GROUP_MEMBER_PK PRIMARY KEY (GROUP_NAME, USER_NAME);
-ALTER TABLE GROUP_MEMBER ADD CONSTRAINT IDX_GROUP_MEMBER_FK0 FOREIGN KEY (GROUP_NAME) REFERENCES ACCOUNT (USER_NAME);
-ALTER TABLE GROUP_MEMBER ADD CONSTRAINT IDX_GROUP_MEMBER_FK1 FOREIGN KEY (USER_NAME) REFERENCES ACCOUNT (USER_NAME);
-
-ALTER TABLE ACCOUNT ADD COLUMN GROUP_ACCOUNT BOOLEAN NOT NULL DEFAULT FALSE;
-
-CREATE OR REPLACE VIEW ISSUE_OUTLINE_VIEW AS
- SELECT
-   A.USER_NAME,
-   A.REPOSITORY_NAME,
-   A.ISSUE_ID,
-   NVL(B.COMMENT_COUNT, 0) AS COMMENT_COUNT
- FROM ISSUE A
- LEFT OUTER JOIN (
-   SELECT USER_NAME, REPOSITORY_NAME, ISSUE_ID, COUNT(COMMENT_ID) AS COMMENT_COUNT FROM ISSUE_COMMENT
-   WHERE ACTION IN ('comment', 'close_comment', 'reopen_comment')
-   GROUP BY USER_NAME, REPOSITORY_NAME, ISSUE_ID
- ) B
- ON (A.USER_NAME = B.USER_NAME AND A.REPOSITORY_NAME = B.REPOSITORY_NAME AND A.ISSUE_ID = B.ISSUE_ID);

src/main/resources/update/1_5.sql

@@ -1,21 +0,0 @@
-ALTER TABLE REPOSITORY ADD COLUMN ORIGIN_USER_NAME VARCHAR(100);
-ALTER TABLE REPOSITORY ADD COLUMN ORIGIN_REPOSITORY_NAME VARCHAR(100);
-ALTER TABLE REPOSITORY ADD COLUMN PARENT_USER_NAME VARCHAR(100);
-ALTER TABLE REPOSITORY ADD COLUMN PARENT_REPOSITORY_NAME VARCHAR(100);
-
-CREATE TABLE PULL_REQUEST(
-		USER_NAME VARCHAR(100) NOT NULL,
-		REPOSITORY_NAME VARCHAR(100) NOT NULL,
-		ISSUE_ID INT NOT NULL,
-		BRANCH VARCHAR(100) NOT NULL,
-		REQUEST_USER_NAME VARCHAR(100) NOT NULL,
-		REQUEST_REPOSITORY_NAME VARCHAR(100) NOT NULL,
-		REQUEST_BRANCH VARCHAR(100) NOT NULL,
-		COMMIT_ID_FROM VARCHAR(40) NOT NULL,
-		COMMIT_ID_TO VARCHAR(40) NOT NULL
-);
-
-ALTER TABLE PULL_REQUEST ADD CONSTRAINT IDX_PULL_REQUEST_PK PRIMARY KEY (USER_NAME, REPOSITORY_NAME, ISSUE_ID);
-ALTER TABLE PULL_REQUEST ADD CONSTRAINT IDX_PULL_REQUEST_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME, ISSUE_ID) REFERENCES ISSUE (USER_NAME, REPOSITORY_NAME, ISSUE_ID);
-
-ALTER TABLE ISSUE ADD COLUMN PULL_REQUEST BOOLEAN NOT NULL DEFAULT FALSE;

src/main/resources/update/1_6.sql

@@ -1,8 +0,0 @@
-CREATE TABLE WEB_HOOK (
-		USER_NAME VARCHAR(100) NOT NULL,
-		REPOSITORY_NAME VARCHAR(100) NOT NULL,
-		URL VARCHAR(200) NOT NULL
-);
-
-ALTER TABLE WEB_HOOK ADD CONSTRAINT IDX_WEB_HOOK_PK PRIMARY KEY (USER_NAME, REPOSITORY_NAME, URL);
-ALTER TABLE WEB_HOOK ADD CONSTRAINT IDX_WEB_HOOK_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME) REFERENCES REPOSITORY (USER_NAME, REPOSITORY_NAME);

src/main/resources/update/1_7.sql

@@ -1,5 +0,0 @@
-ALTER TABLE ACCOUNT ADD COLUMN FULL_NAME VARCHAR(100);
-
-UPDATE ACCOUNT SET FULL_NAME = USER_NAME WHERE FULL_NAME IS NULL;
-
-ALTER TABLE ACCOUNT ALTER COLUMN FULL_NAME SET NOT NULL;

src/main/resources/update/1_8.sql

@@ -1 +0,0 @@
-ALTER TABLE ACCOUNT ADD COLUMN REMOVED BOOLEAN DEFAULT FALSE;

src/main/resources/update/2_3.sql

@@ -1,6 +0,0 @@
-CREATE TABLE PLUGIN (
-  PLUGIN_ID VARCHAR(100) NOT NULL,
-  VERSION   VARCHAR(100) NOT NULL
-);
-
-ALTER TABLE PLUGIN ADD CONSTRAINT IDX_PLUGIN_PK PRIMARY KEY (PLUGIN_ID);

src/main/resources/update/2_7.sql

@@ -1,18 +0,0 @@
-CREATE TABLE COMMIT_COMMENT (
-    USER_NAME VARCHAR(100) NOT NULL,
-    REPOSITORY_NAME VARCHAR(100) NOT NULL,
-    COMMIT_ID VARCHAR(100) NOT NULL,
-    COMMENT_ID INT AUTO_INCREMENT,
-    COMMENTED_USER_NAME VARCHAR(100) NOT NULL,
-    CONTENT TEXT NOT NULL,
-    FILE_NAME NVARCHAR(100),
-    OLD_LINE_NUMBER INT,
-    NEW_LINE_NUMBER INT,
-    REGISTERED_DATE TIMESTAMP NOT NULL,
-    UPDATED_DATE TIMESTAMP NOT NULL,
-    PULL_REQUEST BOOLEAN NOT NULL
-);
-
-ALTER TABLE COMMIT_COMMENT ADD CONSTRAINT IDX_COMMIT_COMMENT_PK PRIMARY KEY (COMMENT_ID);
-ALTER TABLE COMMIT_COMMENT ADD CONSTRAINT IDX_COMMIT_COMMENT_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME) REFERENCES REPOSITORY (USER_NAME, REPOSITORY_NAME);
-ALTER TABLE COMMIT_COMMENT ADD CONSTRAINT IDX_COMMIT_COMMENT_1 UNIQUE (USER_NAME, REPOSITORY_NAME, COMMIT_ID, COMMENT_ID);

src/main/resources/update/2_8.sql

@@ -1 +0,0 @@
-ALTER TABLE COMMIT_COMMENT ALTER COLUMN FILE_NAME NVARCHAR(260);

src/main/resources/update/3_1.sql

@@ -1,42 +0,0 @@
-DROP TABLE IF EXISTS ACCESS_TOKEN;
-
-CREATE TABLE ACCESS_TOKEN (
-   ACCESS_TOKEN_ID INT NOT NULL AUTO_INCREMENT,
-   TOKEN_HASH VARCHAR(40) NOT NULL,
-   USER_NAME VARCHAR(100) NOT NULL,
-   NOTE TEXT NOT NULL
-);
-
-ALTER TABLE ACCESS_TOKEN ADD CONSTRAINT IDX_ACCESS_TOKEN_PK PRIMARY KEY (ACCESS_TOKEN_ID);
-ALTER TABLE ACCESS_TOKEN ADD CONSTRAINT IDX_ACCESS_TOKEN_FK0 FOREIGN KEY (USER_NAME) REFERENCES ACCOUNT (USER_NAME)
-  ON DELETE CASCADE ON UPDATE CASCADE;
-ALTER TABLE ACCESS_TOKEN ADD CONSTRAINT IDX_ACCESS_TOKEN_TOKEN_HASH UNIQUE(TOKEN_HASH);
-
-
-DROP TABLE IF EXISTS COMMIT_STATUS;
-CREATE TABLE COMMIT_STATUS(
-  COMMIT_STATUS_ID INT AUTO_INCREMENT,
-  USER_NAME VARCHAR(100) NOT NULL,
-  REPOSITORY_NAME VARCHAR(100) NOT NULL,
-  COMMIT_ID VARCHAR(40) NOT NULL,
-  CONTEXT VARCHAR(255) NOT NULL, -- context is too long (maximum is 255 characters)
-  STATE VARCHAR(10) NOT NULL, -- pending, success, error, or failure
-  TARGET_URL VARCHAR(200),
-  DESCRIPTION TEXT,
-  CREATOR VARCHAR(100) NOT NULL,
-  REGISTERED_DATE TIMESTAMP NOT NULL, -- CREATED_AT
-  UPDATED_DATE TIMESTAMP NOT NULL -- UPDATED_AT
-);
-ALTER TABLE COMMIT_STATUS ADD CONSTRAINT IDX_COMMIT_STATUS_PK PRIMARY KEY (COMMIT_STATUS_ID);
-ALTER TABLE COMMIT_STATUS ADD CONSTRAINT IDX_COMMIT_STATUS_1
-  UNIQUE (USER_NAME, REPOSITORY_NAME, COMMIT_ID, CONTEXT);
-ALTER TABLE COMMIT_STATUS ADD CONSTRAINT IDX_COMMIT_STATUS_FK1
-  FOREIGN KEY (USER_NAME, REPOSITORY_NAME)
-  REFERENCES REPOSITORY (USER_NAME, REPOSITORY_NAME)
-  ON DELETE CASCADE ON UPDATE CASCADE;
-ALTER TABLE COMMIT_STATUS ADD CONSTRAINT IDX_COMMIT_STATUS_FK2
-  FOREIGN KEY (USER_NAME) REFERENCES ACCOUNT (USER_NAME)
-  ON DELETE CASCADE ON UPDATE CASCADE;
-ALTER TABLE COMMIT_STATUS ADD CONSTRAINT IDX_COMMIT_STATUS_FK3
-  FOREIGN KEY (CREATOR) REFERENCES ACCOUNT (USER_NAME)
-  ON DELETE CASCADE ON UPDATE CASCADE;

src/main/resources/update/3_11.sql

@@ -1,25 +0,0 @@
-DROP TABLE IF EXISTS PROTECTED_BRANCH;
-
-CREATE TABLE PROTECTED_BRANCH(
-    USER_NAME VARCHAR(100) NOT NULL,
-    REPOSITORY_NAME VARCHAR(100) NOT NULL,
-    BRANCH VARCHAR(100) NOT NULL,
-    STATUS_CHECK_ADMIN BOOLEAN NOT NULL DEFAULT false
-);
-
-ALTER TABLE PROTECTED_BRANCH ADD CONSTRAINT IDX_PROTECTED_BRANCH_PK PRIMARY KEY (USER_NAME, REPOSITORY_NAME, BRANCH);
-ALTER TABLE PROTECTED_BRANCH ADD CONSTRAINT IDX_PROTECTED_BRANCH_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME) REFERENCES REPOSITORY (USER_NAME, REPOSITORY_NAME)
-  ON DELETE CASCADE ON UPDATE CASCADE;
-
-
-DROP TABLE IF EXISTS PROTECTED_BRANCH_REQUIRE_CONTEXT;
-CREATE TABLE PROTECTED_BRANCH_REQUIRE_CONTEXT(
-    USER_NAME VARCHAR(100) NOT NULL,
-    REPOSITORY_NAME VARCHAR(100) NOT NULL,
-    BRANCH VARCHAR(100) NOT NULL,
-    CONTEXT VARCHAR(255) NOT NULL
-);
-
-ALTER TABLE PROTECTED_BRANCH_REQUIRE_CONTEXT ADD CONSTRAINT IDX_PROTECTED_BRANCH_REQUIRE_CONTEXT_PK PRIMARY KEY (USER_NAME, REPOSITORY_NAME, BRANCH, CONTEXT);
-ALTER TABLE PROTECTED_BRANCH_REQUIRE_CONTEXT ADD CONSTRAINT IDX_PROTECTED_BRANCH_REQUIRE_CONTEXT_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME, BRANCH) REFERENCES PROTECTED_BRANCH (USER_NAME, REPOSITORY_NAME, BRANCH)
-  ON DELETE CASCADE ON UPDATE CASCADE;

src/main/resources/update/3_13.sql

@@ -1 +0,0 @@
-ALTER TABLE WEB_HOOK ADD COLUMN TOKEN VARCHAR(100);

src/main/resources/update/3_9.sql

@@ -1,55 +0,0 @@
-DROP TABLE IF EXISTS WEB_HOOK_EVENT;
-
-CREATE TABLE WEB_HOOK_EVENT(
-    USER_NAME VARCHAR(100) NOT NULL,
-    REPOSITORY_NAME VARCHAR(100) NOT NULL,
-    URL VARCHAR(200) NOT NULL,
-    EVENT VARCHAR(30) NOT NULL
-);
-
-ALTER TABLE WEB_HOOK_EVENT ADD CONSTRAINT IDX_WEB_HOOK_EVENT_PK PRIMARY KEY (USER_NAME, REPOSITORY_NAME, URL, EVENT);
-ALTER TABLE WEB_HOOK_EVENT ADD CONSTRAINT IDX_WEB_HOOK_EVENT_FK0 FOREIGN KEY (USER_NAME, REPOSITORY_NAME, URL) REFERENCES WEB_HOOK (USER_NAME, REPOSITORY_NAME, URL)
-  ON DELETE CASCADE ON UPDATE CASCADE;
-
-CREATE TEMPORARY TABLE TMP_EVENTS (EVENT VARCHAR(30));
-
-INSERT INTO TMP_EVENTS VALUES ('push'),('issue_comment'),('issues'),('pull_request');
-
-INSERT INTO WEB_HOOK_EVENT (USER_NAME, REPOSITORY_NAME, URL, EVENT)
-  SELECT USER_NAME, REPOSITORY_NAME, URL, EVENT
-    FROM WEB_HOOK, TMP_EVENTS;
-
-DROP TABLE TMP_EVENTS;
-
-ALTER TABLE COMMIT_COMMENT ADD COLUMN ISSUE_ID INT;
-
-CREATE OR REPLACE VIEW ISSUE_OUTLINE_VIEW AS
- SELECT
-   A.USER_NAME,
-   A.REPOSITORY_NAME,
-   A.ISSUE_ID,
-   NVL(B.COMMENT_COUNT, 0) + NVL(C.COMMENT_COUNT, 0) AS COMMENT_COUNT
- FROM ISSUE A
- LEFT OUTER JOIN (
-   SELECT USER_NAME, REPOSITORY_NAME, ISSUE_ID, COUNT(COMMENT_ID) AS COMMENT_COUNT FROM ISSUE_COMMENT
-   WHERE ACTION IN ('comment', 'close_comment', 'reopen_comment')
-   GROUP BY USER_NAME, REPOSITORY_NAME, ISSUE_ID
- ) B
- ON (A.USER_NAME = B.USER_NAME AND A.REPOSITORY_NAME = B.REPOSITORY_NAME AND A.ISSUE_ID = B.ISSUE_ID)
- LEFT OUTER JOIN (
-   SELECT USER_NAME, REPOSITORY_NAME, ISSUE_ID, COUNT(COMMENT_ID) AS COMMENT_COUNT FROM COMMIT_COMMENT
-   GROUP BY USER_NAME, REPOSITORY_NAME, ISSUE_ID
- ) C
- ON (A.USER_NAME = C.USER_NAME AND A.REPOSITORY_NAME = C.REPOSITORY_NAME AND A.ISSUE_ID = C.ISSUE_ID);
-
-
-UPDATE COMMIT_COMMENT C SET (ISSUE_ID) = (
-  SELECT MAX(P.ISSUE_ID)
-  FROM PULL_REQUEST P
-  WHERE
-    C.USER_NAME       = P.USER_NAME AND
-    C.REPOSITORY_NAME = P.REPOSITORY_NAME AND
-    C.COMMIT_ID       = P.COMMIT_ID_TO
-);
-
-ALTER TABLE COMMIT_COMMENT DROP COLUMN PULL_REQUEST;

src/main/resources/update/gitbucket-core_4.0.sql

@@ -0,0 +1,18 @@
+CREATE OR REPLACE VIEW ISSUE_OUTLINE_VIEW AS
+ SELECT
+   A.USER_NAME,
+   A.REPOSITORY_NAME,
+   A.ISSUE_ID,
+   COALESCE(B.COMMENT_COUNT, 0) + COALESCE(C.COMMENT_COUNT, 0) AS COMMENT_COUNT
+ FROM ISSUE A
+ LEFT OUTER JOIN (
+   SELECT USER_NAME, REPOSITORY_NAME, ISSUE_ID, COUNT(COMMENT_ID) AS COMMENT_COUNT FROM ISSUE_COMMENT
+   WHERE ACTION IN ('comment', 'close_comment', 'reopen_comment')
+   GROUP BY USER_NAME, REPOSITORY_NAME, ISSUE_ID
+ ) B
+ ON (A.USER_NAME = B.USER_NAME AND A.REPOSITORY_NAME = B.REPOSITORY_NAME AND A.ISSUE_ID = B.ISSUE_ID)
+ LEFT OUTER JOIN (
+   SELECT USER_NAME, REPOSITORY_NAME, ISSUE_ID, COUNT(COMMENT_ID) AS COMMENT_COUNT FROM COMMIT_COMMENT
+   GROUP BY USER_NAME, REPOSITORY_NAME, ISSUE_ID
+ ) C
+ ON (A.USER_NAME = C.USER_NAME AND A.REPOSITORY_NAME = C.REPOSITORY_NAME AND A.ISSUE_ID = C.ISSUE_ID);

src/main/resources/update/gitbucket-core_4.0.xml

@@ -0,0 +1,351 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<changeSet>
+
+  <!--================================================================================================-->
+  <!-- ACCOUNT -->
+  <!--================================================================================================-->
+  <createTable tableName="ACCOUNT">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="MAIL_ADDRESS" type="varchar(100)" nullable="false"/>
+    <column name="PASSWORD" type="varchar(40)" nullable="false"/>
+    <column name="ADMINISTRATOR" type="boolean" nullable="false"/>
+    <column name="URL" type="varchar(200)" nullable="true"/>
+    <column name="REGISTERED_DATE" type="datetime" nullable="false"/>
+    <column name="UPDATED_DATE" type="datetime" nullable="false"/>
+    <column name="LAST_LOGIN_DATE" type="datetime" nullable="true"/>
+    <column name="IMAGE" type="varchar(100)" nullable="true"/>
+    <column name="GROUP_ACCOUNT" type="boolean" nullable="false"/>
+    <column name="FULL_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REMOVED" type="boolean" nullable="true"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_ACCOUNT_PK" tableName="ACCOUNT" columnNames="USER_NAME"/>
+  <addUniqueConstraint constraintName="IDX_ACCOUNT_1" tableName="ACCOUNT" columnNames="MAIL_ADDRESS"/>
+
+  <insert tableName="ACCOUNT">
+    <column name="USER_NAME" value="root"/>
+    <column name="FULL_NAME" value="root"/>
+    <column name="MAIL_ADDRESS" value="root@localhost"/>
+    <column name="PASSWORD" value="dc76e9f0c0006e8f919e0c515c66dbba3982f785"/>
+    <column name="ADMINISTRATOR" valueBoolean="true"/>
+    <column name="URL" value="https://github.com/gitbucket/gitbucket"/>
+    <column name="GROUP_ACCOUNT" valueBoolean="false"/>
+    <column name="REMOVED" valueBoolean="false"/>
+    <column name="REGISTERED_DATE" valueDate="${currentDateTime}"/>
+    <column name="UPDATED_DATE" valueDate="${currentDateTime}"/>
+  </insert>
+
+  <!--================================================================================================-->
+  <!-- REPOSITORY -->
+  <!--================================================================================================-->
+  <createTable tableName="REPOSITORY">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="PRIVATE" type="boolean" nullable="false"/>
+    <column name="DESCRIPTION" type="text" nullable="true"/>
+    <column name="DEFAULT_BRANCH" type="varchar(100)" nullable="true"/>
+    <column name="REGISTERED_DATE" type="datetime" nullable="false"/>
+    <column name="UPDATED_DATE" type="datetime" nullable="false"/>
+    <column name="LAST_ACTIVITY_DATE" type="datetime" nullable="false"/>
+    <column name="ORIGIN_USER_NAME" type="varchar(100)" nullable="true"/>
+    <column name="ORIGIN_REPOSITORY_NAME" type="varchar(100)" nullable="true"/>
+    <column name="PARENT_USER_NAME" type="varchar(100)" nullable="true"/>
+    <column name="PARENT_REPOSITORY_NAME" type="varchar(100)" nullable="true"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_REPOSITORY_PK" tableName="REPOSITORY" columnNames="USER_NAME, REPOSITORY_NAME"/>
+  <addForeignKeyConstraint constraintName="IDX_REPOSITORY_FK0" baseTableName="REPOSITORY" baseColumnNames="USER_NAME" referencedTableName="ACCOUNT" referencedColumnNames="USER_NAME"/>
+
+  <!--================================================================================================-->
+  <!-- ACCESS_TOKEN -->
+  <!--================================================================================================-->
+  <createTable tableName="ACCESS_TOKEN">
+    <column name="ACCESS_TOKEN_ID" type="int" nullable="false" autoIncrement="true" unique="true"/>
+    <column name="TOKEN_HASH" type="varchar(40)" nullable="false"/>
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="NOTE" type="text" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_ACCESS_TOKEN_PK" tableName="ACCESS_TOKEN" columnNames="ACCESS_TOKEN_ID"/>
+  <addUniqueConstraint constraintName="IDX_ACCESS_TOKEN_TOKEN_HASH" tableName="ACCESS_TOKEN" columnNames="TOKEN_HASH"/>
+  <addForeignKeyConstraint constraintName="IDX_ACCESS_TOKEN_FK0" baseTableName="ACCESS_TOKEN" baseColumnNames="USER_NAME" referencedTableName="ACCOUNT" referencedColumnNames="USER_NAME" onDelete="CASCADE" onUpdate="CASCADE"/>
+
+  <!--================================================================================================-->
+  <!-- ACTIVITY -->
+  <!--================================================================================================-->
+  <createTable tableName="ACTIVITY">
+    <column name="ACTIVITY_ID" type="int" nullable="false" autoIncrement="true" unique="true"/>
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="ACTIVITY_USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="ACTIVITY_TYPE" type="varchar(100)" nullable="false"/>
+    <column name="MESSAGE" type="text" nullable="false"/>
+    <column name="ADDITIONAL_INFO" type="text" nullable="true"/>
+    <column name="ACTIVITY_DATE" type="datetime" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_ACTIVITY_PK" tableName="ACTIVITY" columnNames="ACTIVITY_ID"/>
+  <addForeignKeyConstraint constraintName="IDX_ACTIVITY_FK1" baseTableName="ACTIVITY" baseColumnNames="ACTIVITY_USER_NAME" referencedTableName="ACCOUNT" referencedColumnNames="USER_NAME"/>
+  <addForeignKeyConstraint constraintName="IDX_ACTIVITY_FK0" baseTableName="ACTIVITY" baseColumnNames="USER_NAME, REPOSITORY_NAME" referencedTableName="REPOSITORY" referencedColumnNames="USER_NAME, REPOSITORY_NAME"/>
+
+  <!--================================================================================================-->
+  <!-- COLLABORATOR -->
+  <!--================================================================================================-->
+  <createTable tableName="COLLABORATOR">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="COLLABORATOR_NAME" type="varchar(100)" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_COLLABORATOR_PK" tableName="COLLABORATOR" columnNames="USER_NAME, REPOSITORY_NAME, COLLABORATOR_NAME"/>
+  <addForeignKeyConstraint constraintName="IDX_COLLABORATOR_FK1" baseTableName="COLLABORATOR" baseColumnNames="COLLABORATOR_NAME" referencedTableName="ACCOUNT" referencedColumnNames="USER_NAME"/>
+  <addForeignKeyConstraint constraintName="IDX_COLLABORATOR_FK0" baseTableName="COLLABORATOR" baseColumnNames="USER_NAME, REPOSITORY_NAME" referencedTableName="REPOSITORY" referencedColumnNames="USER_NAME, REPOSITORY_NAME"/>
+
+  <!--================================================================================================-->
+  <!-- COMMIT_COMMENT -->
+  <!--================================================================================================-->
+  <createTable tableName="COMMIT_COMMENT">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="COMMIT_ID" type="varchar(100)" nullable="false"/>
+    <column name="COMMENT_ID" type="int" nullable="false" autoIncrement="true" unique="true"/>
+    <column name="COMMENTED_USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="CONTENT" type="text" nullable="false"/>
+    <column name="FILE_NAME" type="varchar(260)" nullable="true"/>
+    <column name="OLD_LINE_NUMBER" type="int" nullable="true"/>
+    <column name="NEW_LINE_NUMBER" type="int" nullable="true"/>
+    <column name="REGISTERED_DATE" type="datetime" nullable="false"/>
+    <column name="UPDATED_DATE" type="datetime" nullable="false"/>
+    <column name="ISSUE_ID" type="int" nullable="true"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_COMMIT_COMMENT_PK" tableName="COMMIT_COMMENT" columnNames="COMMENT_ID"/>
+  <addForeignKeyConstraint constraintName="IDX_COMMIT_COMMENT_FK0" baseTableName="COMMIT_COMMENT" baseColumnNames="USER_NAME, REPOSITORY_NAME" referencedTableName="REPOSITORY" referencedColumnNames="USER_NAME, REPOSITORY_NAME"/>
+
+  <!--================================================================================================-->
+  <!-- COMMIT_STATUS -->
+  <!--================================================================================================-->
+  <createTable tableName="COMMIT_STATUS">
+    <column name="COMMIT_STATUS_ID" type="int" nullable="false" autoIncrement="true" unique="true"/>
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="COMMIT_ID" type="varchar(40)" nullable="false"/>
+    <column name="CONTEXT" type="varchar(255)" nullable="false"/>
+    <column name="STATE" type="varchar(10)" nullable="false"/>
+    <column name="TARGET_URL" type="varchar(200)" nullable="true"/>
+    <column name="DESCRIPTION" type="text" nullable="true"/>
+    <column name="CREATOR" type="varchar(100)" nullable="false"/>
+    <column name="REGISTERED_DATE" type="datetime" nullable="false"/>
+    <column name="UPDATED_DATE" type="datetime" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_COMMIT_STATUS_PK" tableName="COMMIT_STATUS" columnNames="COMMIT_STATUS_ID"/>
+  <addUniqueConstraint constraintName="IDX_COMMIT_STATUS_1" tableName="COMMIT_STATUS" columnNames="USER_NAME, REPOSITORY_NAME, COMMIT_ID, CONTEXT"/>
+  <addForeignKeyConstraint constraintName="IDX_COMMIT_STATUS_FK3" baseTableName="COMMIT_STATUS" baseColumnNames="CREATOR" referencedTableName="ACCOUNT" referencedColumnNames="USER_NAME" onDelete="CASCADE" onUpdate="CASCADE"/>
+  <addForeignKeyConstraint constraintName="IDX_COMMIT_STATUS_FK2" baseTableName="COMMIT_STATUS" baseColumnNames="USER_NAME" referencedTableName="ACCOUNT" referencedColumnNames="USER_NAME" onDelete="CASCADE" onUpdate="CASCADE"/>
+  <addForeignKeyConstraint constraintName="IDX_COMMIT_STATUS_FK1" baseTableName="COMMIT_STATUS" baseColumnNames="USER_NAME, REPOSITORY_NAME" referencedTableName="REPOSITORY" referencedColumnNames="USER_NAME, REPOSITORY_NAME" onDelete="CASCADE" onUpdate="CASCADE"/>
+
+  <!--================================================================================================-->
+  <!-- GROUP_MEMBER -->
+  <!--================================================================================================-->
+  <createTable tableName="GROUP_MEMBER">
+    <column name="GROUP_NAME" type="varchar(100)" nullable="false"/>
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="MANAGER" type="boolean" nullable="true"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_GROUP_MEMBER_PK" tableName="GROUP_MEMBER" columnNames="GROUP_NAME, USER_NAME"/>
+  <addForeignKeyConstraint constraintName="IDX_GROUP_MEMBER_FK1" baseTableName="GROUP_MEMBER" baseColumnNames="USER_NAME" referencedTableName="ACCOUNT" referencedColumnNames="USER_NAME"/>
+  <addForeignKeyConstraint constraintName="IDX_GROUP_MEMBER_FK0" baseTableName="GROUP_MEMBER" baseColumnNames="GROUP_NAME" referencedTableName="ACCOUNT" referencedColumnNames="USER_NAME"/>
+
+  <!--================================================================================================-->
+  <!-- LABEL -->
+  <!--================================================================================================-->
+  <createTable tableName="LABEL">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="LABEL_ID" type="int" nullable="false" autoIncrement="true" unique="true"/>
+    <column name="LABEL_NAME" type="varchar(100)" nullable="false"/>
+    <column name="COLOR" type="char(6)" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_LABEL_PK" tableName="LABEL" columnNames="USER_NAME, REPOSITORY_NAME, LABEL_ID"/>
+  <addForeignKeyConstraint constraintName="IDX_LABEL_FK0" baseTableName="LABEL" baseColumnNames="USER_NAME, REPOSITORY_NAME" referencedTableName="REPOSITORY" referencedColumnNames="USER_NAME, REPOSITORY_NAME"/>
+
+  <!--================================================================================================-->
+  <!-- MILESTONE -->
+  <!--================================================================================================-->
+  <createTable tableName="MILESTONE">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="MILESTONE_ID" type="int" nullable="false" autoIncrement="true" unique="true"/>
+    <column name="TITLE" type="varchar(100)" nullable="false"/>
+    <column name="DESCRIPTION" type="text" nullable="true"/>
+    <column name="DUE_DATE" type="datetime" nullable="true"/>
+    <column name="CLOSED_DATE" type="datetime" nullable="true"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_MILESTONE_PK" tableName="MILESTONE" columnNames="USER_NAME, REPOSITORY_NAME, MILESTONE_ID"/>
+  <addForeignKeyConstraint constraintName="IDX_MILESTONE_FK0" baseTableName="MILESTONE" baseColumnNames="USER_NAME, REPOSITORY_NAME" referencedTableName="REPOSITORY" referencedColumnNames="USER_NAME, REPOSITORY_NAME"/>
+
+  <!--================================================================================================-->
+  <!-- ISSUE -->
+  <!--================================================================================================-->
+  <createTable tableName="ISSUE">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="ISSUE_ID" type="int" nullable="false"/>
+    <column name="OPENED_USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="MILESTONE_ID" type="int" nullable="true"/>
+    <column name="ASSIGNED_USER_NAME" type="varchar(100)" nullable="true"/>
+    <column name="TITLE" type="text" nullable="false"/>
+    <column name="CONTENT" type="text" nullable="true"/>
+    <column name="CLOSED" type="boolean" nullable="false"/>
+    <column name="REGISTERED_DATE" type="datetime" nullable="false"/>
+    <column name="UPDATED_DATE" type="datetime" nullable="false"/>
+    <column name="PULL_REQUEST" type="boolean" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_ISSUE_PK" tableName="ISSUE" columnNames="ISSUE_ID, USER_NAME, REPOSITORY_NAME"/>
+  <addForeignKeyConstraint constraintName="IDX_ISSUE_FK0" baseTableName="ISSUE" baseColumnNames="USER_NAME, REPOSITORY_NAME" referencedTableName="REPOSITORY" referencedColumnNames="USER_NAME, REPOSITORY_NAME"/>
+  <addForeignKeyConstraint constraintName="IDX_ISSUE_FK2" baseTableName="ISSUE" baseColumnNames="MILESTONE_ID" referencedTableName="MILESTONE" referencedColumnNames="MILESTONE_ID"/>
+  <addForeignKeyConstraint constraintName="IDX_ISSUE_FK1" baseTableName="ISSUE" baseColumnNames="OPENED_USER_NAME" referencedTableName="ACCOUNT" referencedColumnNames="USER_NAME"/>
+
+  <!--================================================================================================-->
+  <!-- ISSUE_COMMENT -->
+  <!--================================================================================================-->
+  <createTable tableName="ISSUE_COMMENT">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="ISSUE_ID" type="int" nullable="false"/>
+    <column name="COMMENT_ID" type="int" nullable="false" autoIncrement="true" unique="true"/>
+    <column name="ACTION" type="varchar(20)" nullable="false"/>
+    <column name="COMMENTED_USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="CONTENT" type="text" nullable="false"/>
+    <column name="REGISTERED_DATE" type="datetime" nullable="false"/>
+    <column name="UPDATED_DATE" type="datetime" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_ISSUE_COMMENT_PK" tableName="ISSUE_COMMENT" columnNames="COMMENT_ID"/>
+  <addForeignKeyConstraint constraintName="IDX_ISSUE_COMMENT_FK0" baseTableName="ISSUE_COMMENT" baseColumnNames="USER_NAME, REPOSITORY_NAME, ISSUE_ID" referencedTableName="ISSUE" referencedColumnNames="USER_NAME, REPOSITORY_NAME, ISSUE_ID"/>
+
+  <!--================================================================================================-->
+  <!-- ISSUE_ID -->
+  <!--================================================================================================-->
+  <createTable tableName="ISSUE_ID">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="ISSUE_ID" type="int" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_ISSUE_ID_PK" tableName="ISSUE_ID" columnNames="USER_NAME, REPOSITORY_NAME"/>
+  <addForeignKeyConstraint constraintName="IDX_ISSUE_ID_FK1" baseTableName="ISSUE_ID" baseColumnNames="USER_NAME, REPOSITORY_NAME" referencedTableName="REPOSITORY" referencedColumnNames="USER_NAME, REPOSITORY_NAME"/>
+
+  <!--================================================================================================-->
+  <!-- ISSUE_ID -->
+  <!--================================================================================================-->
+  <createTable tableName="ISSUE_LABEL">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="ISSUE_ID" type="int" nullable="false"/>
+    <column name="LABEL_ID" type="int" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_ISSUE_LABEL_PK" tableName="ISSUE_LABEL" columnNames="USER_NAME, REPOSITORY_NAME, ISSUE_ID, LABEL_ID"/>
+  <addForeignKeyConstraint constraintName="IDX_ISSUE_LABEL_FK0" baseTableName="ISSUE_LABEL" baseColumnNames="USER_NAME, REPOSITORY_NAME, ISSUE_ID" referencedTableName="ISSUE" referencedColumnNames="USER_NAME, REPOSITORY_NAME, ISSUE_ID"/>
+
+  <!--================================================================================================-->
+  <!-- PLUGIN -->
+  <!--================================================================================================-->
+  <createTable tableName="PLUGIN">
+    <column name="PLUGIN_ID" type="varchar(100)" nullable="false"/>
+    <column name="VERSION" type="varchar(100)" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_PLUGIN_PK" tableName="PLUGIN" columnNames="PLUGIN_ID"/>
+
+  <!--================================================================================================-->
+  <!-- PULL_REQUEST -->
+  <!--================================================================================================-->
+  <createTable tableName="PULL_REQUEST">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="ISSUE_ID" type="int" nullable="false"/>
+    <column name="BRANCH" type="varchar(100)" nullable="false"/>
+    <column name="REQUEST_USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REQUEST_REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REQUEST_BRANCH" type="varchar(100)" nullable="false"/>
+    <column name="COMMIT_ID_FROM" type="varchar(40)" nullable="false"/>
+    <column name="COMMIT_ID_TO" type="varchar(40)" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_PULL_REQUEST_PK" tableName="PULL_REQUEST" columnNames="USER_NAME, REPOSITORY_NAME, ISSUE_ID"/>
+  <addForeignKeyConstraint constraintName="IDX_PULL_REQUEST_FK0" baseTableName="PULL_REQUEST" baseColumnNames="USER_NAME, REPOSITORY_NAME, ISSUE_ID" referencedTableName="ISSUE" referencedColumnNames="USER_NAME, REPOSITORY_NAME, ISSUE_ID"/>
+
+  <!--================================================================================================-->
+  <!-- SSH_KEY -->
+  <!--================================================================================================-->
+  <createTable tableName="SSH_KEY">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="SSH_KEY_ID" type="int" nullable="false" autoIncrement="true" unique="true"/>
+    <column name="TITLE" type="varchar(100)" nullable="false"/>
+    <column name="PUBLIC_KEY" type="text" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_SSH_KEY_PK" tableName="SSH_KEY" columnNames="USER_NAME, SSH_KEY_ID"/>
+  <addForeignKeyConstraint constraintName="IDX_SSH_KEY_FK0" baseTableName="SSH_KEY" baseColumnNames="USER_NAME" referencedTableName="ACCOUNT" referencedColumnNames="USER_NAME"/>
+
+  <!--================================================================================================-->
+  <!-- WEB_HOOK -->
+  <!--================================================================================================-->
+  <createTable tableName="WEB_HOOK">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="URL" type="varchar(200)" nullable="false"/>
+    <column name="TOKEN" type="varchar(100)" nullable="true"/>
+    <column name="CTYPE" type="varchar(10)" nullable="true"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_WEB_HOOK_PK" tableName="WEB_HOOK" columnNames="USER_NAME, REPOSITORY_NAME, URL"/>
+  <addForeignKeyConstraint constraintName="IDX_WEB_HOOK_FK0" baseTableName="WEB_HOOK" baseColumnNames="USER_NAME, REPOSITORY_NAME" referencedTableName="REPOSITORY" referencedColumnNames="USER_NAME, REPOSITORY_NAME"/>
+
+  <!--================================================================================================-->
+  <!-- WEB_HOOK_EVENT -->
+  <!--================================================================================================-->
+  <createTable tableName="WEB_HOOK_EVENT">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="URL" type="varchar(200)" nullable="false"/>
+    <column name="EVENT" type="varchar(30)" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_WEB_HOOK_EVENT_PK" tableName="WEB_HOOK_EVENT" columnNames="USER_NAME, REPOSITORY_NAME, URL, EVENT"/>
+  <addForeignKeyConstraint constraintName="IDX_WEB_HOOK_EVENT_FK0" baseTableName="WEB_HOOK_EVENT" baseColumnNames="USER_NAME, REPOSITORY_NAME, URL" referencedTableName="WEB_HOOK" referencedColumnNames="USER_NAME, REPOSITORY_NAME, URL" onDelete="CASCADE" onUpdate="CASCADE"/>
+
+  <!--================================================================================================-->
+  <!-- PROTECTED_BRANCH -->
+  <!--================================================================================================-->
+  <createTable tableName="PROTECTED_BRANCH">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="BRANCH" type="varchar(100)" nullable="false"/>
+    <column name="STATUS_CHECK_ADMIN" type="boolean" nullable="false" defaultValueBoolean="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_PROTECTED_BRANCH_PK" tableName="PROTECTED_BRANCH" columnNames="USER_NAME, REPOSITORY_NAME, BRANCH"/>
+  <addForeignKeyConstraint constraintName="IDX_PROTECTED_BRANCH_FK0" baseTableName="PROTECTED_BRANCH" baseColumnNames="USER_NAME, REPOSITORY_NAME" referencedTableName="REPOSITORY" referencedColumnNames="USER_NAME, REPOSITORY_NAME" onDelete="CASCADE" onUpdate="CASCADE"/>
+
+  <!--================================================================================================-->
+  <!-- PROTECTED_BRANCH_REQUIRE_CONTEXT -->
+  <!--================================================================================================-->
+  <createTable tableName="PROTECTED_BRANCH_REQUIRE_CONTEXT">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="REPOSITORY_NAME" type="varchar(100)" nullable="false"/>
+    <column name="BRANCH" type="varchar(100)" nullable="false"/>
+    <column name="CONTEXT" type="varchar(255)" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_PROTECTED_BRANCH_REQUIRE_CONTEXT_PK" tableName="PROTECTED_BRANCH_REQUIRE_CONTEXT" columnNames="USER_NAME, REPOSITORY_NAME, BRANCH, CONTEXT"/>
+  <addForeignKeyConstraint constraintName="IDX_PROTECTED_BRANCH_REQUIRE_CONTEXT_FK0" baseTableName="PROTECTED_BRANCH_REQUIRE_CONTEXT" baseColumnNames="USER_NAME, REPOSITORY_NAME, BRANCH" referencedTableName="PROTECTED_BRANCH" referencedColumnNames="USER_NAME, REPOSITORY_NAME, BRANCH" onDelete="CASCADE" onUpdate="CASCADE"/>
+
+</changeSet>

src/main/resources/update/gitbucket-core_4.2.xml

@@ -0,0 +1,10 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<changeSet>
+    <addColumn tableName="REPOSITORY">
+        <column name="ENABLE_ISSUES" type="boolean" nullable="false" defaultValueBoolean="true"/>
+        <column name="EXTERNAL_ISSUES_URL" type="varchar(200)" nullable="true"/>
+        <column name="ENABLE_WIKI" type="boolean" nullable="false" defaultValueBoolean="true"/>
+        <column name="ALLOW_WIKI_EDITING" type="boolean" nullable="false" defaultValueBoolean="false"/>
+        <column name="EXTERNAL_WIKI_URL" type="varchar(200)" nullable="true"/>
+    </addColumn>
+</changeSet>

src/main/resources/update/gitbucket-core_4.6.xml

@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<changeSet>
+    <addColumn tableName="REPOSITORY">
+        <column name="ALLOW_FORK" type="boolean" nullable="false" defaultValueBoolean="true"/>
+    </addColumn>
+</changeSet>

src/main/resources/update/gitbucket-core_4.7.sql

@@ -0,0 +1,2 @@
+-- DELETE COLLABORATORS IN GROUP REPOSITORIES
+DELETE FROM COLLABORATOR WHERE USER_NAME IN (SELECT USER_NAME FROM ACCOUNT WHERE GROUP_ACCOUNT = TRUE)

src/main/resources/update/gitbucket-core_4.7.xml

@@ -0,0 +1,33 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<changeSet>
+    <addColumn tableName="COLLABORATOR">
+        <column name="ROLE" type="varchar(10)" nullable="false" defaultValue="ADMIN"/>
+    </addColumn>
+    <addColumn tableName="REPOSITORY">
+        <column name="WIKI_OPTION" type="varchar(10)" nullable="false" defaultValue="DISABLE"/>
+        <column name="ISSUES_OPTION" type="varchar(10)" nullable="false" defaultValue="DISABLE"/>
+    </addColumn>
+    <update tableName="REPOSITORY">
+        <column name="WIKI_OPTION" value="DISABLE"/>
+        <where>ENABLE_WIKI = FALSE</where>
+    </update>
+    <update tableName="REPOSITORY">
+        <column name="WIKI_OPTION" value="PRIVATE"/>
+        <where>ENABLE_WIKI = TRUE AND ALLOW_WIKI_EDITING = FALSE</where>
+    </update>
+    <update tableName="REPOSITORY">
+        <column name="WIKI_OPTION" value="PUBLIC"/>
+        <where>ENABLE_WIKI = TRUE AND ALLOW_WIKI_EDITING = TRUE</where>
+    </update>
+    <update tableName="REPOSITORY">
+        <column name="ISSUES_OPTION" value="DISABLE"/>
+        <where>ENABLE_ISSUES = FALSE</where>
+    </update>
+    <update tableName="REPOSITORY">
+        <column name="ISSUES_OPTION" value="PUBLIC"/>
+        <where>ENABLE_ISSUES = TRUE</where>
+    </update>
+    <dropColumn tableName="REPOSITORY" columnName="ENABLE_WIKI"/>
+    <dropColumn tableName="REPOSITORY" columnName="ALLOW_WIKI_EDITING"/>
+    <dropColumn tableName="REPOSITORY" columnName="ENABLE_ISSUES"/>
+</changeSet>

src/main/scala/ScalatraBootstrap.scala

@@ -1,24 +1,33 @@
 
-import gitbucket.core.controller._
-import gitbucket.core.plugin.PluginRegistry
-import gitbucket.core.servlet.{AccessTokenAuthenticationFilter, BasicAuthenticationFilter, Database, TransactionFilter}
-import gitbucket.core.util.Directory
-
 import java.util.EnumSet
 import javax.servlet._
 
+import gitbucket.core.controller._
+import gitbucket.core.plugin.PluginRegistry
+import gitbucket.core.service.SystemSettingsService
+import gitbucket.core.servlet._
+import gitbucket.core.util.Directory
 import org.scalatra._
 
 
-class ScalatraBootstrap extends LifeCycle {
+class ScalatraBootstrap extends LifeCycle with SystemSettingsService {
   override def init(context: ServletContext) {
+
+    val settings = loadSystemSettings()
+    if(settings.baseUrl.exists(_.startsWith("https://"))) {
+      context.getSessionCookieConfig.setSecure(true)
+    }
+
     // Register TransactionFilter and BasicAuthenticationFilter at first
     context.addFilter("transactionFilter", new TransactionFilter)
     context.getFilterRegistration("transactionFilter").addMappingForUrlPatterns(EnumSet.allOf(classOf[DispatcherType]), true, "/*")
-    context.addFilter("basicAuthenticationFilter", new BasicAuthenticationFilter)
-    context.getFilterRegistration("basicAuthenticationFilter").addMappingForUrlPatterns(EnumSet.allOf(classOf[DispatcherType]), true, "/git/*")
-    context.addFilter("accessTokenAuthenticationFilter", new AccessTokenAuthenticationFilter)
-    context.getFilterRegistration("accessTokenAuthenticationFilter").addMappingForUrlPatterns(EnumSet.allOf(classOf[DispatcherType]), true, "/api/v3/*")
+    context.addFilter("gitAuthenticationFilter", new GitAuthenticationFilter)
+    context.getFilterRegistration("gitAuthenticationFilter").addMappingForUrlPatterns(EnumSet.allOf(classOf[DispatcherType]), true, "/git/*")
+    context.addFilter("apiAuthenticationFilter", new ApiAuthenticationFilter)
+    context.getFilterRegistration("apiAuthenticationFilter").addMappingForUrlPatterns(EnumSet.allOf(classOf[DispatcherType]), true, "/api/v3/*")
+    context.addFilter("ghCompatRepositoryAccessFilter", new GHCompatRepositoryAccessFilter)
+    context.getFilterRegistration("ghCompatRepositoryAccessFilter").addMappingForUrlPatterns(EnumSet.allOf(classOf[DispatcherType]), true, "/*")
+
     // Register controllers
     context.mount(new AnonymousAccessController, "/*")
 

src/main/scala/gitbucket/core/GitBucketCoreModule.scala

@@ -0,0 +1,28 @@
+package gitbucket.core
+
+import io.github.gitbucket.solidbase.migration.{SqlMigration, LiquibaseMigration}
+import io.github.gitbucket.solidbase.model.{Version, Module}
+
+object GitBucketCoreModule extends Module("gitbucket-core",
+  new Version("4.0.0",
+    new LiquibaseMigration("update/gitbucket-core_4.0.xml"),
+    new SqlMigration("update/gitbucket-core_4.0.sql")
+  ),
+  new Version("4.1.0"),
+  new Version("4.2.0",
+    new LiquibaseMigration("update/gitbucket-core_4.2.xml")
+  ),
+  new Version("4.2.1"),
+  new Version("4.3.0"),
+  new Version("4.4.0"),
+  new Version("4.5.0"),
+  new Version("4.6.0",
+    new LiquibaseMigration("update/gitbucket-core_4.6.xml")
+  ),
+  new Version("4.7.0",
+    new LiquibaseMigration("update/gitbucket-core_4.7.xml"),
+    new SqlMigration("update/gitbucket-core_4.7.sql")
+  ),
+  new Version("4.7.1"),
+  new Version("4.8")
+)

src/main/scala/gitbucket/core/api/ApiBranch.scala

@@ -14,3 +14,10 @@ case class ApiBranch(
    "self" -> ApiPath(s"/api/v3/repos/${repositoryName.fullName}/branches/${name}"),
    "html" -> ApiPath(s"/${repositoryName.fullName}/tree/${name}"))
 }
+
+case class ApiBranchCommit(sha: String)
+
+case class ApiBranchForList(
+  name: String,
+  commit: ApiBranchCommit
+)

src/main/scala/gitbucket/core/api/ApiBranchProtection.scala

@@ -14,7 +14,7 @@ object ApiBranchProtection{
 
   def apply(info: ProtectedBranchService.ProtectedBranchInfo): ApiBranchProtection = ApiBranchProtection(
     enabled = info.enabled,
-    required_status_checks = Some(Status(EnforcementLevel(info.enabled, info.includeAdministrators), info.contexts)))
+    required_status_checks = Some(Status(EnforcementLevel(info.enabled && info.contexts.nonEmpty, info.includeAdministrators), info.contexts)))
   val statusNone = Status(Off, Seq.empty)
   case class Status(enforcement_level: EnforcementLevel, contexts: Seq[String])
   sealed class EnforcementLevel(val name: String)
@@ -44,4 +44,3 @@ object ApiBranchProtection{
    }
  ))
 }
-

src/main/scala/gitbucket/core/api/ApiContents.scala

@@ -0,0 +1,18 @@
+package gitbucket.core.api
+
+import gitbucket.core.util.JGitUtil.FileInfo
+import org.apache.commons.codec.binary.Base64
+
+case class ApiContents(`type`: String, name: String, content: Option[String], encoding: Option[String])
+
+object ApiContents{
+  def apply(fileInfo: FileInfo, content: Option[Array[Byte]]): ApiContents = {
+    if(fileInfo.isDirectory) {
+      ApiContents("dir", fileInfo.name, None, None)
+    } else {
+      content.map(arr =>
+        ApiContents("file", fileInfo.name, Some(Base64.encodeBase64String(arr)), Some("base64"))
+      ).getOrElse(ApiContents("file", fileInfo.name, None, None))
+    }
+  }
+}

src/main/scala/gitbucket/core/api/ApiEndPoint.scala

@@ -0,0 +1,3 @@
+package gitbucket.core.api
+
+case class ApiEndPoint(rate_limit_url: ApiPath = ApiPath("/api/v3/rate_limit"))

src/main/scala/gitbucket/core/api/ApiIssue.scala

@@ -20,6 +20,16 @@ case class ApiIssue(
   body: String)(repositoryName: RepositoryName, isPullRequest: Boolean){
   val comments_url = ApiPath(s"/api/v3/repos/${repositoryName.fullName}/issues/${number}/comments")
   val html_url = ApiPath(s"/${repositoryName.fullName}/${if(isPullRequest){ "pull" }else{ "issues" }}/${number}")
+  val pull_request = if (isPullRequest) {
+    Some(Map(
+      "url" -> ApiPath(s"/api/v3/repos/${repositoryName.fullName}/pulls/${number}"),
+      "html_url" -> ApiPath(s"/${repositoryName.fullName}/pull/${number}")
+      // "diff_url" -> ApiPath(s"/${repositoryName.fullName}/pull/${number}.diff"),
+      // "patch_url" -> ApiPath(s"/${repositoryName.fullName}/pull/${number}.patch")
+    ))
+  } else {
+    None
+  }
 }
 
 object ApiIssue{

src/main/scala/gitbucket/core/api/ApiPullRequest.scala

@@ -1,7 +1,6 @@
 package gitbucket.core.api
 
-import gitbucket.core.model.{Issue, PullRequest}
-
+import gitbucket.core.model.{Account, Issue, IssueComment, PullRequest}
 import java.util.Date
 
 
@@ -15,6 +14,9 @@ case class ApiPullRequest(
   head: ApiPullRequest.Commit,
   base: ApiPullRequest.Commit,
   mergeable: Option[Boolean],
+  merged: Boolean,
+  merged_at: Option[Date],
+  merged_by: Option[ApiUser],
   title: String,
   body: String,
   user: ApiUser) {
@@ -31,7 +33,15 @@ case class ApiPullRequest(
 }
 
 object ApiPullRequest{
-  def apply(issue: Issue, pullRequest: PullRequest, headRepo: ApiRepository, baseRepo: ApiRepository, user: ApiUser): ApiPullRequest = ApiPullRequest(
+  def apply(
+    issue: Issue,
+    pullRequest: PullRequest,
+    headRepo: ApiRepository,
+    baseRepo: ApiRepository,
+    user: ApiUser,
+    mergedComment: Option[(IssueComment, Account)]
+  ): ApiPullRequest =
+    ApiPullRequest(
       number     = issue.issueId,
       updated_at = issue.updatedDate,
       created_at = issue.registeredDate,
@@ -44,6 +54,9 @@ object ApiPullRequest{
                      ref  = pullRequest.branch,
                      repo = baseRepo)(issue.userName),
       mergeable  = None, // TODO: need check mergeable.
+      merged     = mergedComment.isDefined,
+      merged_at  = mergedComment.map { case (comment, _) => comment.registeredDate },
+      merged_by  = mergedComment.map { case (_, account) => ApiUser(account) },
       title      = issue.title,
       body       = issue.content.getOrElse(""),
       user       = user

src/main/scala/gitbucket/core/api/ApiRef.scala

@@ -0,0 +1,5 @@
+package gitbucket.core.api
+
+case class ApiObject(sha: String)
+
+case class ApiRef(ref: String, `object`: ApiObject)

src/main/scala/gitbucket/core/api/ApiRepository.scala

@@ -14,11 +14,11 @@ case class ApiRepository(
   `private`: Boolean,
   default_branch: String,
   owner: ApiUser)(urlIsHtmlUrl: Boolean) {
-  val forks_count   = forks
+  val forks_count = forks
   val watchers_count = watchers
-  val url       = if(urlIsHtmlUrl){
+  val url = if(urlIsHtmlUrl){
     ApiPath(s"/${full_name}")
-  }else{
+  } else {
     ApiPath(s"/api/v3/repos/${full_name}")
   }
   val http_url  = ApiPath(s"/git/${full_name}.git")
@@ -34,14 +34,14 @@ object ApiRepository{
       watchers: Int = 0,
       urlIsHtmlUrl: Boolean = false): ApiRepository =
     ApiRepository(
-      name        = repository.repositoryName,
-      full_name   = s"${repository.userName}/${repository.repositoryName}",
-      description = repository.description.getOrElse(""),
-      watchers    = 0,
-      forks       = forkedCount,
-      `private`   = repository.isPrivate,
+      name           = repository.repositoryName,
+      full_name      = s"${repository.userName}/${repository.repositoryName}",
+      description    = repository.description.getOrElse(""),
+      watchers       = 0,
+      forks          = forkedCount,
+      `private`      = repository.isPrivate,
       default_branch = repository.defaultBranch,
-      owner       = owner
+      owner          = owner
     )(urlIsHtmlUrl)
 
   def apply(repositoryInfo: RepositoryInfo, owner: ApiUser): ApiRepository =

src/main/scala/gitbucket/core/api/ApiUser.scala

@@ -13,6 +13,7 @@ case class ApiUser(
   created_at: Date) {
   val url                 = ApiPath(s"/api/v3/users/${login}")
   val html_url            = ApiPath(s"/${login}")
+  val avatar_url          = ApiPath(s"/${login}/_avatar")
   // val followers_url       = ApiPath(s"/api/v3/users/${login}/followers")
   // val following_url       = ApiPath(s"/api/v3/users/${login}/following{/other_user}")
   // val gists_url           = ApiPath(s"/api/v3/users/${login}/gists{/gist_id}")
@@ -29,7 +30,7 @@ object ApiUser{
   def apply(user: Account): ApiUser = ApiUser(
     login      = user.userName,
     email      = user.mailAddress,
-    `type`     = if(user.isGroupAccount){ "Organization" }else{ "User" },
+    `type`     = if(user.isGroupAccount){ "Organization" } else { "User" },
     site_admin = user.isAdmin,
     created_at = user.registeredDate
   )

src/main/scala/gitbucket/core/api/CreateARepository.scala

@@ -11,7 +11,7 @@ case class CreateARepository(
     auto_init: Boolean = false
 ) {
   def isValid: Boolean = {
-    name.length<=40 &&
+    name.length <= 100 &&
         name.matches("[a-zA-Z0-9\\-\\+_.]+") &&
         !name.startsWith("_") &&
         !name.startsWith("-")

src/main/scala/gitbucket/core/controller/AccountController.scala

@@ -14,6 +14,7 @@ import gitbucket.core.util._
 import io.github.gitbucket.scalatra.forms._
 import org.apache.commons.io.FileUtils
 import org.scalatra.i18n.Messages
+import org.scalatra.BadRequest
 
 
 class AccountController extends AccountControllerBase
@@ -38,7 +39,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
   case class PersonalTokenForm(note: String)
 
   val newForm = mapping(
-    "userName"    -> trim(label("User name"    , text(required, maxlength(100), identifier, uniqueUserName))),
+    "userName"    -> trim(label("User name"    , text(required, maxlength(100), identifier, uniqueUserName, reservedNames))),
     "password"    -> trim(label("Password"     , text(required, maxlength(20)))),
     "fullName"    -> trim(label("Full Name"    , text(required, maxlength(100)))),
     "mailAddress" -> trim(label("Mail Address" , text(required, maxlength(100), uniqueMailAddress()))),
@@ -68,7 +69,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
   case class EditGroupForm(groupName: String, url: Option[String], fileId: Option[String], members: String, clearImage: Boolean)
 
   val newGroupForm = mapping(
-    "groupName" -> trim(label("Group name" ,text(required, maxlength(100), identifier, uniqueUserName))),
+    "groupName" -> trim(label("Group name" ,text(required, maxlength(100), identifier, uniqueUserName, reservedNames))),
     "url"       -> trim(label("URL"        ,optional(text(maxlength(200))))),
     "fileId"    -> trim(label("File ID"    ,optional(text()))),
     "members"   -> trim(label("Members"    ,text(required, members)))
@@ -120,7 +121,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
         // Members
         case "members" if(account.isGroupAccount) => {
           val members = getGroupMembers(account.userName)
-          gitbucket.core.account.html.members(account, members.map(_.userName),
+          gitbucket.core.account.html.members(account, members,
             context.loginAccount.exists(x => members.exists { member => member.userName == x.userName && member.isManager }))
         }
 
@@ -133,7 +134,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
             context.loginAccount.exists(x => members.exists { member => member.userName == x.userName && member.isManager }))
         }
       }
-    } getOrElse NotFound
+    } getOrElse NotFound()
   }
 
   get("/:userName.atom") {
@@ -155,8 +156,8 @@ trait AccountControllerBase extends AccountManagementControllerBase {
   get("/:userName/_edit")(oneselfOnly {
     val userName = params("userName")
     getAccountByUserName(userName).map { x =>
-      html.edit(x, flash.get("info"))
-    } getOrElse NotFound
+      html.edit(x, flash.get("info"), flash.get("error"))
+    } getOrElse NotFound()
   })
 
   post("/:userName/_edit", editForm)(oneselfOnly { form =>
@@ -172,13 +173,17 @@ trait AccountControllerBase extends AccountManagementControllerBase {
       flash += "info" -> "Account information has been updated."
       redirect(s"/${userName}/_edit")
 
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
   get("/:userName/_delete")(oneselfOnly {
     val userName = params("userName")
 
-    getAccountByUserName(userName, true).foreach { account =>
+    getAccountByUserName(userName, true).map { account =>
+      if(isLastAdministrator(account)){
+        flash += "error" -> "Account can't be removed because this is last one administrator."
+        redirect(s"/${userName}/_edit")
+      } else {
 //      // Remove repositories
 //      getRepositoryNamesOfUser(userName).foreach { repositoryName =>
 //        deleteRepository(userName, repositoryName)
@@ -187,21 +192,19 @@ trait AccountControllerBase extends AccountManagementControllerBase {
 //        FileUtils.deleteDirectory(getTemporaryDir(userName, repositoryName))
 //      }
 //      // Remove from GROUP_MEMBER, COLLABORATOR and REPOSITORY
-//      removeUserRelatedData(userName)
-
-      removeUserRelatedData(userName)
-      updateAccount(account.copy(isRemoved = true))
-    }
-
-    session.invalidate
-    redirect("/")
+        removeUserRelatedData(userName)
+        updateAccount(account.copy(isRemoved = true))
+        session.invalidate
+        redirect("/")
+      }
+    } getOrElse NotFound()
   })
 
   get("/:userName/_ssh")(oneselfOnly {
     val userName = params("userName")
     getAccountByUserName(userName).map { x =>
       html.ssh(x, getPublicKeys(x.userName))
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
   post("/:userName/_ssh", sshKeyForm)(oneselfOnly { form =>
@@ -232,7 +235,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
         case _ => None
       }
       html.application(x, tokens, generatedToken)
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
   post("/:userName/_personalToken", personalTokenForm)(oneselfOnly { form =>
@@ -258,7 +261,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
       } else {
         html.register()
       }
-    } else NotFound
+    } else NotFound()
   }
 
   post("/register", newForm){ form =>
@@ -266,7 +269,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
       createAccount(form.userName, sha1(form.password), form.fullName, form.mailAddress, false, form.url)
       updateImage(form.userName, form.fileId, false)
       redirect("/signin")
-    } else NotFound
+    } else NotFound()
   }
 
   get("/groups/new")(usersOnly {
@@ -316,18 +319,18 @@ trait AccountControllerBase extends AccountManagementControllerBase {
 
         // Update GROUP_MEMBER
         updateGroupMembers(form.groupName, members)
-        // Update COLLABORATOR for group repositories
-        getRepositoryNamesOfUser(form.groupName).foreach { repositoryName =>
-          removeCollaborators(form.groupName, repositoryName)
-          members.foreach { case (userName, isManager) =>
-            addCollaborator(form.groupName, repositoryName, userName)
-          }
-        }
+//        // Update COLLABORATOR for group repositories
+//        getRepositoryNamesOfUser(form.groupName).foreach { repositoryName =>
+//          removeCollaborators(form.groupName, repositoryName)
+//          members.foreach { case (userName, isManager) =>
+//            addCollaborator(form.groupName, repositoryName, userName)
+//          }
+//        }
 
         updateImage(form.groupName, form.fileId, form.clearImage)
         redirect(s"/${form.groupName}")
 
-      } getOrElse NotFound
+      } getOrElse NotFound()
     }
   })
 
@@ -353,76 +356,80 @@ trait AccountControllerBase extends AccountManagementControllerBase {
   })
 
   get("/:owner/:repository/fork")(readableUsersOnly { repository =>
-    val loginAccount   = context.loginAccount.get
-    val loginUserName  = loginAccount.userName
-    val groups         = getGroupsByUserName(loginUserName)
-    groups match {
-      case _: List[String] =>
-        val managerPermissions = groups.map { group =>
-          val members = getGroupMembers(group)
-          context.loginAccount.exists(x => members.exists { member => member.userName == x.userName && member.isManager })
-        }
-        helper.html.forkrepository(
-          repository,
-          (groups zip managerPermissions).toMap
-        )
-      case _ => redirect(s"/${loginUserName}")
-    }
+    if(repository.repository.options.allowFork){
+      val loginAccount   = context.loginAccount.get
+      val loginUserName  = loginAccount.userName
+      val groups         = getGroupsByUserName(loginUserName)
+      groups match {
+        case _: List[String] =>
+          val managerPermissions = groups.map { group =>
+            val members = getGroupMembers(group)
+            context.loginAccount.exists(x => members.exists { member => member.userName == x.userName && member.isManager })
+          }
+          helper.html.forkrepository(
+            repository,
+            (groups zip managerPermissions).toMap
+          )
+        case _ => redirect(s"/${loginUserName}")
+      }
+    } else BadRequest()
   })
 
   post("/:owner/:repository/fork", accountForm)(readableUsersOnly { (form, repository) =>
-    val loginAccount  = context.loginAccount.get
-    val loginUserName = loginAccount.userName
-    val accountName   = form.accountName
+    if(repository.repository.options.allowFork){
+      val loginAccount  = context.loginAccount.get
+      val loginUserName = loginAccount.userName
+      val accountName   = form.accountName
 
-    LockUtil.lock(s"${accountName}/${repository.name}"){
-      if(getRepository(accountName, repository.name).isDefined ||
-          (accountName != loginUserName && !getGroupsByUserName(loginUserName).contains(accountName))){
-        // redirect to the repository if repository already exists
-        redirect(s"/${accountName}/${repository.name}")
-      } else {
-        // Insert to the database at first
-        val originUserName = repository.repository.originUserName.getOrElse(repository.owner)
-        val originRepositoryName = repository.repository.originRepositoryName.getOrElse(repository.name)
+      LockUtil.lock(s"${accountName}/${repository.name}"){
+        if(getRepository(accountName, repository.name).isDefined ||
+            (accountName != loginUserName && !getGroupsByUserName(loginUserName).contains(accountName))){
+          // redirect to the repository if repository already exists
+          redirect(s"/${accountName}/${repository.name}")
+        } else {
+          // Insert to the database at first
+          val originUserName = repository.repository.originUserName.getOrElse(repository.owner)
+          val originRepositoryName = repository.repository.originRepositoryName.getOrElse(repository.name)
 
-        insertRepository(
-          repositoryName       = repository.name,
-          userName             = accountName,
-          description          = repository.repository.description,
-          isPrivate            = repository.repository.isPrivate,
-          originRepositoryName = Some(originRepositoryName),
-          originUserName       = Some(originUserName),
-          parentRepositoryName = Some(repository.name),
-          parentUserName       = Some(repository.owner)
-        )
+          insertRepository(
+            repositoryName       = repository.name,
+            userName             = accountName,
+            description          = repository.repository.description,
+            isPrivate            = repository.repository.isPrivate,
+            originRepositoryName = Some(originRepositoryName),
+            originUserName       = Some(originUserName),
+            parentRepositoryName = Some(repository.name),
+            parentUserName       = Some(repository.owner)
+          )
 
-        // Add collaborators for group repository
-        val ownerAccount = getAccountByUserName(accountName).get
-        if(ownerAccount.isGroupAccount){
-          getGroupMembers(accountName).foreach { member =>
-            addCollaborator(accountName, repository.name, member.userName)
-          }
+//          // Add collaborators for group repository
+//          val ownerAccount = getAccountByUserName(accountName).get
+//          if(ownerAccount.isGroupAccount){
+//            getGroupMembers(accountName).foreach { member =>
+//              addCollaborator(accountName, repository.name, member.userName)
+//            }
+//          }
+
+          // Insert default labels
+          insertDefaultLabels(accountName, repository.name)
+
+          // clone repository actually
+          JGitUtil.cloneRepository(
+            getRepositoryDir(repository.owner, repository.name),
+            getRepositoryDir(accountName, repository.name))
+
+          // Create Wiki repository
+          JGitUtil.cloneRepository(
+            getWikiRepositoryDir(repository.owner, repository.name),
+            getWikiRepositoryDir(accountName, repository.name))
+
+          // Record activity
+          recordForkActivity(repository.owner, repository.name, loginUserName, accountName)
+          // redirect to the repository
+          redirect(s"/${accountName}/${repository.name}")
         }
-
-        // Insert default labels
-        insertDefaultLabels(accountName, repository.name)
-
-        // clone repository actually
-        JGitUtil.cloneRepository(
-          getRepositoryDir(repository.owner, repository.name),
-          getRepositoryDir(accountName, repository.name))
-
-        // Create Wiki repository
-        JGitUtil.cloneRepository(
-          getWikiRepositoryDir(repository.owner, repository.name),
-          getWikiRepositoryDir(accountName, repository.name))
-
-        // Record activity
-        recordForkActivity(repository.owner, repository.name, loginUserName, accountName)
-        // redirect to the repository
-        redirect(s"/${accountName}/${repository.name}")
       }
-    }
+    } else BadRequest()
   })
 
   private def existsAccount: Constraint = new Constraint(){
@@ -447,8 +454,8 @@ trait AccountControllerBase extends AccountManagementControllerBase {
 
   private def validPublicKey: Constraint = new Constraint(){
     override def validate(name: String, value: String, messages: Messages): Option[String] = SshUtil.str2PublicKey(value) match {
-     case Some(_) => None
-     case None => Some("Key is invalid.")
+     case Some(_) if !getAllKeys().exists(_.publicKey == value) => None
+     case _ => Some("Key is invalid.")
     }
   }
 

src/main/scala/gitbucket/core/controller/ApiController.scala

@@ -7,9 +7,10 @@ import gitbucket.core.service.PullRequestService._
 import gitbucket.core.service._
 import gitbucket.core.util.ControlUtil._
 import gitbucket.core.util.Directory._
-import gitbucket.core.util.JGitUtil.CommitInfo
+import gitbucket.core.util.JGitUtil._
 import gitbucket.core.util._
 import gitbucket.core.util.Implicits._
+import gitbucket.core.view.helpers.{renderMarkup, isRenderable}
 import org.eclipse.jgit.api.Git
 import org.scalatra.{NoContent, UnprocessableEntity, Created}
 import scala.collection.JavaConverters._
@@ -21,6 +22,7 @@ class ApiController extends ApiControllerBase
   with IssuesService
   with LabelsService
   with PullRequestService
+  with CommitsService
   with CommitStatusService
   with RepositoryCreationService
   with HandleCommentService
@@ -34,7 +36,7 @@ class ApiController extends ApiControllerBase
   with GroupManagerAuthenticator
   with ReferrerAuthenticator
   with ReadableUsersAuthenticator
-  with CollaboratorsAuthenticator
+  with WritableUsersAuthenticator
 
 trait ApiControllerBase extends ControllerBase {
   self: RepositoryService
@@ -51,26 +53,160 @@ trait ApiControllerBase extends ControllerBase {
     with GroupManagerAuthenticator
     with ReferrerAuthenticator
     with ReadableUsersAuthenticator
-    with CollaboratorsAuthenticator =>
+    with WritableUsersAuthenticator =>
+
+  /**
+    * https://developer.github.com/v3/#root-endpoint
+    */
+  get("/api/v3/") {
+    JsonFormat(ApiEndPoint())
+  }
+
+  /**
+    * https://developer.github.com/v3/orgs/#get-an-organization
+    */
+  get("/api/v3/orgs/:groupName") {
+    getAccountByUserName(params("groupName")).filter(account => account.isGroupAccount).map { account =>
+      JsonFormat(ApiUser(account))
+    } getOrElse NotFound()
+  }
 
   /**
    * https://developer.github.com/v3/users/#get-a-single-user
    */
   get("/api/v3/users/:userName") {
-    getAccountByUserName(params("userName")).map { account =>
+    getAccountByUserName(params("userName")).filterNot(account => account.isGroupAccount).map { account =>
       JsonFormat(ApiUser(account))
-    } getOrElse NotFound
+    } getOrElse NotFound()
   }
 
+  /**
+    * https://developer.github.com/v3/repos/#list-organization-repositories
+    */
+  get("/api/v3/orgs/:orgName/repos") {
+    JsonFormat(getVisibleRepositories(context.loginAccount, Some(params("orgName"))).map{ r => ApiRepository(r, getAccountByUserName(r.owner).get)})
+  }
+  /**
+   * https://developer.github.com/v3/repos/#list-user-repositories
+   */
+  get("/api/v3/users/:userName/repos") {
+    JsonFormat(getVisibleRepositories(context.loginAccount, Some(params("userName"))).map{ r => ApiRepository(r, getAccountByUserName(r.owner).get)})
+  }
+
+  /*
+   * https://developer.github.com/v3/repos/branches/#list-branches
+   */
+  get ("/api/v3/repos/:owner/:repo/branches")(referrersOnly { repository =>
+    JsonFormat(JGitUtil.getBranches(
+      owner         = repository.owner,
+      name          = repository.name,
+      defaultBranch = repository.repository.defaultBranch,
+      origin        = repository.repository.originUserName.isEmpty
+    ).map { br =>
+      ApiBranchForList(br.name, ApiBranchCommit(br.commitId))
+    })
+  })
+
+  /*
+   * https://developer.github.com/v3/repos/contents/#get-contents
+   */
+  get("/api/v3/repos/:owner/:repo/contents/*")(referrersOnly { repository =>
+    def getFileInfo(git: Git, revision: String, pathStr: String): Option[FileInfo] = {
+      val path = new java.io.File(pathStr)
+      val dirName = path.getParent match {
+        case null => "."
+        case s => s
+      }
+      getFileList(git, revision, dirName).find(f => f.name.equals(path.getName))
+    }
+
+    val path = multiParams("splat").head match {
+      case s if s.isEmpty => "."
+      case s => s
+    }
+    val refStr = params.getOrElse("ref", repository.repository.defaultBranch)
+
+    using(Git.open(getRepositoryDir(params("owner"), params("repo")))){ git =>
+      val fileList = getFileList(git, refStr, path)
+      if (fileList.isEmpty) { // file or NotFound
+        getFileInfo(git, refStr, path).flatMap(f => {
+          val largeFile = params.get("large_file").exists(s => s.equals("true"))
+          val content = getContentFromId(git, f.id, largeFile)
+          request.getHeader("Accept") match {
+            case "application/vnd.github.v3.raw" => {
+              contentType = "application/vnd.github.v3.raw"
+              content
+            }
+            case "application/vnd.github.v3.html" if isRenderable(f.name) => {
+              contentType = "application/vnd.github.v3.html"
+              content.map(c =>
+                List(
+                  "<div data-path=\"", path, "\" id=\"file\">", "<article>",
+                  renderMarkup(path.split("/").toList, new String(c), refStr, repository, false, false, true).body,
+                  "</article>", "</div>"
+                ).mkString
+              )
+            }
+            case "application/vnd.github.v3.html" => {
+              contentType = "application/vnd.github.v3.html"
+              content.map(c =>
+                List(
+                  "<div data-path=\"", path, "\" id=\"file\">", "<div class=\"plain\">", "<pre>",
+                  play.twirl.api.HtmlFormat.escape(new String(c)).body,
+                  "</pre>", "</div>", "</div>"
+                ).mkString
+              )
+            }
+            case _ =>
+              Some(JsonFormat(ApiContents(f, content)))
+          }
+        }).getOrElse(NotFound())
+      } else { // directory
+        JsonFormat(fileList.map{f => ApiContents(f, None)})
+      }
+    }
+  })
+
+  /*
+   * https://developer.github.com/v3/git/refs/#get-a-reference
+   */
+  get("/api/v3/repos/:owner/:repo/git/*") (referrersOnly { repository =>
+    val revstr = multiParams("splat").head
+    using(Git.open(getRepositoryDir(params("owner"), params("repo")))) { git =>
+      //JsonFormat( (revstr, git.getRepository().resolve(revstr)) )
+      // getRef is deprecated by jgit-4.2. use exactRef() or findRef()
+      val sha = git.getRepository().getRef(revstr).getObjectId().name()
+      JsonFormat(ApiRef(revstr, ApiObject(sha)))
+    }
+  })
+
+  /**
+   * https://developer.github.com/v3/repos/collaborators/#list-collaborators
+   */
+  get("/api/v3/repos/:owner/:repo/collaborators") (referrersOnly { repository =>
+    // TODO Should ApiUser take permission? getCollaboratorUserNames does not return owner group members.
+    JsonFormat(getCollaboratorUserNames(params("owner"), params("repo")).map(u => ApiUser(getAccountByUserName(u).get)))
+  })
+
   /**
    * https://developer.github.com/v3/users/#get-the-authenticated-user
    */
   get("/api/v3/user") {
     context.loginAccount.map { account =>
       JsonFormat(ApiUser(account))
-    } getOrElse Unauthorized
+    } getOrElse Unauthorized()
   }
 
+  /**
+   * List user's own repository
+   * https://developer.github.com/v3/repos/#list-your-repositories
+   */
+  get("/api/v3/user/repos")(usersOnly{
+    JsonFormat(getVisibleRepositories(context.loginAccount, Option(context.loginAccount.get.userName)).map{
+      r => ApiRepository(r, getAccountByUserName(r.owner).get)
+    })
+  })
+
   /**
    * Create user repository
    * https://developer.github.com/v3/repos/#create
@@ -92,7 +228,7 @@ trait ApiControllerBase extends ControllerBase {
           )
         }
       }
-    }) getOrElse NotFound
+    }) getOrElse NotFound()
   })
 
   /**
@@ -116,14 +252,16 @@ trait ApiControllerBase extends ControllerBase {
           )
         }
       }
-    }) getOrElse NotFound
+    }) getOrElse NotFound()
   })
 
-  /** https://developer.github.com/v3/repos/#enabling-and-disabling-branch-protection */
+  /**
+   * https://developer.github.com/v3/repos/#enabling-and-disabling-branch-protection
+   */
   patch("/api/v3/repos/:owner/:repo/branches/:branch")(ownerOnly { repository =>
     import gitbucket.core.api._
     (for{
-      branch <- params.get("branch") if repository.branchList.find(_ == branch).isDefined
+      branch     <- params.get("branch") if repository.branchList.find(_ == branch).isDefined
       protection <- extractFromJsonBody[ApiBranchProtection.EnablingAndDisabling].map(_.protection)
     } yield {
       if(protection.enabled){
@@ -132,7 +270,7 @@ trait ApiControllerBase extends ControllerBase {
         disableBranchProtection(repository.owner, repository.name, branch)
       }
       JsonFormat(ApiBranch(branch, protection)(RepositoryName(repository)))
-    }) getOrElse NotFound
+    }) getOrElse NotFound()
   })
 
   /**
@@ -145,16 +283,29 @@ trait ApiControllerBase extends ControllerBase {
     org.scalatra.NotFound(ApiError("Rate limiting is not enabled."))
   }
 
+  /**
+   * https://developer.github.com/v3/issues/#get-a-single-issue
+   */
+  get("/api/v3/repos/:owner/:repository/issues/:id")(referrersOnly { repository =>
+    (for{
+      issueId  <- params("id").toIntOpt
+      issue <- getIssue(repository.owner, repository.name, issueId.toString)
+      openedUser <- getAccountByUserName(issue.openedUserName)
+    } yield {
+      JsonFormat(ApiIssue(issue, RepositoryName(repository), ApiUser(openedUser)))
+    }) getOrElse NotFound()
+  })
+
   /**
    * https://developer.github.com/v3/issues/comments/#list-comments-on-an-issue
    */
   get("/api/v3/repos/:owner/:repository/issues/:id/comments")(referrersOnly { repository =>
     (for{
-      issueId <- params("id").toIntOpt
-      comments = getCommentsForApi(repository.owner, repository.name, issueId.toInt)
+      issueId  <- params("id").toIntOpt
+      comments =  getCommentsForApi(repository.owner, repository.name, issueId.toInt)
     } yield {
       JsonFormat(comments.map{ case (issueComment, user, issue) => ApiComment(issueComment, RepositoryName(repository), issueId, ApiUser(user), issue.isPullRequest) })
-    }).getOrElse(NotFound)
+    }) getOrElse NotFound()
   })
 
   /**
@@ -170,7 +321,7 @@ trait ApiControllerBase extends ControllerBase {
       issueComment <- getComment(repository.owner, repository.name, id.toString())
     } yield {
       JsonFormat(ApiComment(issueComment, RepositoryName(repository), issueId, ApiUser(context.loginAccount.get), issue.isPullRequest))
-    }) getOrElse NotFound
+    }) getOrElse NotFound()
   })
 
   /**
@@ -197,7 +348,7 @@ trait ApiControllerBase extends ControllerBase {
    * Create a label
    * https://developer.github.com/v3/issues/labels/#create-a-label
    */
-  post("/api/v3/repos/:owner/:repository/labels")(collaboratorsOnly { repository =>
+  post("/api/v3/repos/:owner/:repository/labels")(writableUsersOnly { repository =>
     (for{
       data <- extractFromJsonBody[CreateALabel] if data.isValid
     } yield {
@@ -222,7 +373,7 @@ trait ApiControllerBase extends ControllerBase {
    * Update a label
    * https://developer.github.com/v3/issues/labels/#update-a-label
    */
-  patch("/api/v3/repos/:owner/:repository/labels/:labelName")(collaboratorsOnly { repository =>
+  patch("/api/v3/repos/:owner/:repository/labels/:labelName")(writableUsersOnly { repository =>
     (for{
       data <- extractFromJsonBody[CreateALabel] if data.isValid
     } yield {
@@ -232,12 +383,14 @@ trait ApiControllerBase extends ControllerBase {
             updateLabel(repository.owner, repository.name, label.labelId, data.name, data.color)
             JsonFormat(ApiLabel(
               getLabel(repository.owner, repository.name, label.labelId).get,
-              RepositoryName(repository)))
+              RepositoryName(repository)
+            ))
           } else {
             // TODO ApiError should support errors field to enhance compatibility of GitHub API
             UnprocessableEntity(ApiError(
               "Validation Failed",
-              Some("https://developer.github.com/v3/issues/labels/#create-a-label")))
+              Some("https://developer.github.com/v3/issues/labels/#create-a-label")
+            ))
           }
         } getOrElse NotFound()
       }
@@ -248,7 +401,7 @@ trait ApiControllerBase extends ControllerBase {
    * Delete a label
    * https://developer.github.com/v3/issues/labels/#delete-a-label
    */
-  delete("/api/v3/repos/:owner/:repository/labels/:labelName")(collaboratorsOnly { repository =>
+  delete("/api/v3/repos/:owner/:repository/labels/:labelName")(writableUsersOnly { repository =>
     LockUtil.lock(RepositoryName(repository).fullName) {
       getLabel(repository.owner, repository.name, params("labelName")).map { label =>
         deleteLabel(repository.owner, repository.name, label.labelId)
@@ -261,18 +414,29 @@ trait ApiControllerBase extends ControllerBase {
    * https://developer.github.com/v3/pulls/#list-pull-requests
    */
   get("/api/v3/repos/:owner/:repository/pulls")(referrersOnly { repository =>
-    val page       = IssueSearchCondition.page(request)
+    val page = IssueSearchCondition.page(request)
     // TODO: more api spec condition
     val condition = IssueSearchCondition(request)
     val baseOwner = getAccountByUserName(repository.owner).get
-    val issues:List[(Issue, Account, Int, PullRequest, Repository, Account)] = searchPullRequestByApi(condition, (page - 1) * PullRequestLimit, PullRequestLimit, repository.owner -> repository.name)
-    JsonFormat(issues.map{case (issue, issueUser, commentCount, pullRequest, headRepo, headOwner) =>
+
+    val issues: List[(Issue, Account, Int, PullRequest, Repository, Account)] =
+      searchPullRequestByApi(
+        condition = condition,
+        offset    = (page - 1) * PullRequestLimit,
+        limit     = PullRequestLimit,
+        repos     = repository.owner -> repository.name
+      )
+
+    JsonFormat(issues.map { case (issue, issueUser, commentCount, pullRequest, headRepo, headOwner) =>
       ApiPullRequest(
-        issue,
-        pullRequest,
-        ApiRepository(headRepo, ApiUser(headOwner)),
-        ApiRepository(repository, ApiUser(baseOwner)),
-        ApiUser(issueUser)) })
+        issue         = issue,
+        pullRequest   = pullRequest,
+        headRepo      = ApiRepository(headRepo, ApiUser(headOwner)),
+        baseRepo      = ApiRepository(repository, ApiUser(baseOwner)),
+        user          = ApiUser(issueUser),
+        mergedComment = getMergedComment(repository.owner, repository.name, issue.issueId)
+      )
+    })
   })
 
   /**
@@ -280,21 +444,23 @@ trait ApiControllerBase extends ControllerBase {
    */
   get("/api/v3/repos/:owner/:repository/pulls/:id")(referrersOnly { repository =>
     (for{
-      issueId <- params("id").toIntOpt
+      issueId   <- params("id").toIntOpt
       (issue, pullRequest) <- getPullRequest(repository.owner, repository.name, issueId)
-      users = getAccountsByUserNames(Set(repository.owner, pullRequest.requestUserName, issue.openedUserName), Set())
+      users     =  getAccountsByUserNames(Set(repository.owner, pullRequest.requestUserName, issue.openedUserName), Set.empty)
       baseOwner <- users.get(repository.owner)
       headOwner <- users.get(pullRequest.requestUserName)
       issueUser <- users.get(issue.openedUserName)
       headRepo  <- getRepository(pullRequest.requestUserName, pullRequest.requestRepositoryName)
     } yield {
       JsonFormat(ApiPullRequest(
-        issue,
-        pullRequest,
-        ApiRepository(headRepo, ApiUser(headOwner)),
-        ApiRepository(repository, ApiUser(baseOwner)),
-        ApiUser(issueUser)))
-    }).getOrElse(NotFound)
+        issue         = issue,
+        pullRequest   = pullRequest,
+        headRepo      = ApiRepository(headRepo, ApiUser(headOwner)),
+        baseRepo      = ApiRepository(repository, ApiUser(baseOwner)),
+        user          = ApiUser(issueUser),
+        mergedComment = getMergedComment(repository.owner, repository.name, issue.issueId)
+      ))
+    }) getOrElse NotFound()
   })
 
   /**
@@ -309,11 +475,11 @@ trait ApiControllerBase extends ControllerBase {
           val oldId = git.getRepository.resolve(pullreq.commitIdFrom)
           val newId = git.getRepository.resolve(pullreq.commitIdTo)
           val repoFullName = RepositoryName(repository)
-          val commits = git.log.addRange(oldId, newId).call.iterator.asScala.map(c => ApiCommitListItem(new CommitInfo(c), repoFullName)).toList
+          val commits = git.log.addRange(oldId, newId).call.iterator.asScala.map { c => ApiCommitListItem(new CommitInfo(c), repoFullName) }.toList
           JsonFormat(commits)
         }
       }
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
   /**
@@ -326,19 +492,19 @@ trait ApiControllerBase extends ControllerBase {
   /**
    * https://developer.github.com/v3/repos/statuses/#create-a-status
    */
-  post("/api/v3/repos/:owner/:repo/statuses/:sha")(collaboratorsOnly { repository =>
+  post("/api/v3/repos/:owner/:repo/statuses/:sha")(writableUsersOnly { repository =>
     (for{
-      ref <- params.get("sha")
-      sha <- JGitUtil.getShaByRef(repository.owner, repository.name, ref)
-      data <- extractFromJsonBody[CreateAStatus] if data.isValid
-      creator <- context.loginAccount
-      state <- CommitState.valueOf(data.state)
-      statusId = createCommitStatus(repository.owner, repository.name, sha, data.context.getOrElse("default"),
-        state, data.target_url, data.description, new java.util.Date(), creator)
-      status <- getCommitStatus(repository.owner, repository.name, statusId)
+      ref      <- params.get("sha")
+      sha      <- JGitUtil.getShaByRef(repository.owner, repository.name, ref)
+      data     <- extractFromJsonBody[CreateAStatus] if data.isValid
+      creator  <- context.loginAccount
+      state    <- CommitState.valueOf(data.state)
+      statusId =  createCommitStatus(repository.owner, repository.name, sha, data.context.getOrElse("default"),
+                                     state, data.target_url, data.description, new java.util.Date(), creator)
+      status   <- getCommitStatus(repository.owner, repository.name, statusId)
     } yield {
       JsonFormat(ApiCommitStatus(status, ApiUser(creator)))
-    }) getOrElse NotFound
+    }) getOrElse NotFound()
   })
 
   /**
@@ -354,7 +520,7 @@ trait ApiControllerBase extends ControllerBase {
       JsonFormat(getCommitStatuesWithCreator(repository.owner, repository.name, sha).map{ case(status, creator) =>
         ApiCommitStatus(status, ApiUser(creator))
       })
-    }) getOrElse NotFound
+    }) getOrElse NotFound()
   })
 
   /**
@@ -373,17 +539,17 @@ trait ApiControllerBase extends ControllerBase {
    */
   get("/api/v3/repos/:owner/:repo/commits/:ref/status")(referrersOnly { repository =>
     (for{
-      ref <- params.get("ref")
+      ref   <- params.get("ref")
       owner <- getAccountByUserName(repository.owner)
-      sha <- JGitUtil.getShaByRef(repository.owner, repository.name, ref)
+      sha   <- JGitUtil.getShaByRef(repository.owner, repository.name, ref)
     } yield {
       val statuses = getCommitStatuesWithCreator(repository.owner, repository.name, sha)
       JsonFormat(ApiCombinedCommitStatus(sha, statuses, ApiRepository(repository, owner)))
-    }) getOrElse NotFound
+    }) getOrElse NotFound()
   })
 
   private def isEditable(owner: String, repository: String, author: String)(implicit context: Context): Boolean =
-    hasWritePermission(owner, repository, context.loginAccount) || author == context.loginAccount.get.userName
+    hasDeveloperRole(owner, repository, context.loginAccount) || author == context.loginAccount.get.userName
 
 }
 

src/main/scala/gitbucket/core/controller/ControllerBase.scala

@@ -191,6 +191,7 @@ case class Context(settings: SystemSettingsService.SystemSettings, loginAccount:
     case agent if agent.contains("Win") => "windows"
     case _ => null
   }
+  val sidebarCollapse = request.getSession.getAttribute("sidebar-collapse") != null
 
   /**
    * Get object from cache.
@@ -244,4 +245,13 @@ trait AccountManagementControllerBase extends ControllerBase {
         .map    { _ => "Mail address is already registered." }
   }
 
+  val allReservedNames = Set("git", "admin", "upload", "api")
+  protected def reservedNames(): Constraint = new Constraint(){
+    override def validate(name: String, value: String, messages: Messages): Option[String] = if(allReservedNames.contains(value)){
+      Some(s"${value} is reserved")
+    } else {
+      None
+    }
+  }
+
 }

src/main/scala/gitbucket/core/controller/DashboardController.scala

@@ -1,13 +1,13 @@
 package gitbucket.core.controller
 
 import gitbucket.core.dashboard.html
-import gitbucket.core.service.{RepositoryService, PullRequestService, AccountService, IssuesService}
-import gitbucket.core.util.{StringUtil, Keys, UsersAuthenticator}
+import gitbucket.core.service._
+import gitbucket.core.util.{Keys, UsersAuthenticator}
 import gitbucket.core.util.Implicits._
 import gitbucket.core.service.IssuesService._
 
 class DashboardController extends DashboardControllerBase
-  with IssuesService with PullRequestService with RepositoryService with AccountService
+  with IssuesService with PullRequestService with RepositoryService with AccountService with CommitsService
   with UsersAuthenticator
 
 trait DashboardControllerBase extends ControllerBase {
@@ -15,20 +15,7 @@ trait DashboardControllerBase extends ControllerBase {
     with UsersAuthenticator =>
 
   get("/dashboard/issues")(usersOnly {
-    val q = request.getParameter("q")
-    val account = context.loginAccount.get
-    Option(q).map { q =>
-      val condition = IssueSearchCondition(q, Map[String, Int]())
-      q match {
-        case q if(q.contains("is:pr")) => redirect(s"/dashboard/pulls?q=${StringUtil.urlEncode(q)}")
-        case q if(q.contains(s"author:${account.userName}")) => redirect(s"/dashboard/issues/created_by${condition.toURL}")
-        case q if(q.contains(s"assignee:${account.userName}")) => redirect(s"/dashboard/issues/assigned${condition.toURL}")
-        case q if(q.contains(s"mentions:${account.userName}")) => redirect(s"/dashboard/issues/mentioned${condition.toURL}")
-        case _ => searchIssues("created_by")
-      }
-    } getOrElse {
-      searchIssues("created_by")
-    }
+    searchIssues("created_by")
   })
 
   get("/dashboard/issues/assigned")(usersOnly {
@@ -44,20 +31,7 @@ trait DashboardControllerBase extends ControllerBase {
   })
 
   get("/dashboard/pulls")(usersOnly {
-    val q = request.getParameter("q")
-    val account = context.loginAccount.get
-    Option(q).map { q =>
-      val condition = IssueSearchCondition(q, Map[String, Int]())
-      q match {
-        case q if(q.contains("is:issue")) => redirect(s"/dashboard/issues?q=${StringUtil.urlEncode(q)}")
-        case q if(q.contains(s"author:${account.userName}")) => redirect(s"/dashboard/pulls/created_by${condition.toURL}")
-        case q if(q.contains(s"assignee:${account.userName}")) => redirect(s"/dashboard/pulls/assigned${condition.toURL}")
-        case q if(q.contains(s"mentions:${account.userName}")) => redirect(s"/dashboard/pulls/mentioned${condition.toURL}")
-        case _ => searchPullRequests("created_by")
-      }
-    } getOrElse {
-      searchPullRequests("created_by")
-    }
+    searchPullRequests("created_by")
   })
 
   get("/dashboard/pulls/created_by")(usersOnly {
@@ -73,19 +47,12 @@ trait DashboardControllerBase extends ControllerBase {
   })
 
   private def getOrCreateCondition(key: String, filter: String, userName: String) = {
-    val condition = session.putAndGet(key, if(request.hasQueryString){
-      val q = request.getParameter("q")
-      if(q == null){
-        IssueSearchCondition(request)
-      } else {
-        IssueSearchCondition(q, Map[String, Int]())
-      }
-    } else session.getAs[IssueSearchCondition](key).getOrElse(IssueSearchCondition()))
+    val condition = IssueSearchCondition(request)
 
     filter match {
-      case "assigned"  => condition.copy(assigned = Some(userName), author = None          , mentioned = None)
-      case "mentioned" => condition.copy(assigned = None          , author = None          , mentioned = Some(userName))
-      case _           => condition.copy(assigned = None          , author = Some(userName), mentioned = None)
+      case "assigned"  => condition.copy(assigned = Some(Some(userName)), author = None, mentioned = None)
+      case "mentioned" => condition.copy(assigned = None, author = None, mentioned = Some(userName))
+      case _           => condition.copy(assigned = None, author = Some(userName), mentioned = None)
     }
   }
 
@@ -103,12 +70,14 @@ trait DashboardControllerBase extends ControllerBase {
       countIssue(condition.copy(state = "open"  ), false, userRepos: _*),
       countIssue(condition.copy(state = "closed"), false, userRepos: _*),
       filter match {
-        case "assigned"  => condition.copy(assigned  = Some(userName))
+        case "assigned"  => condition.copy(assigned  = Some(Some(userName)))
         case "mentioned" => condition.copy(mentioned = Some(userName))
         case _           => condition.copy(author    = Some(userName))
       },
       filter,
-      getGroupNames(userName))
+      getGroupNames(userName),
+      Nil,
+      getUserRepositories(userName, withoutPhysicalInfo = true))
   }
 
   private def searchPullRequests(filter: String) = {
@@ -126,12 +95,14 @@ trait DashboardControllerBase extends ControllerBase {
       countIssue(condition.copy(state = "open"  ), true, allRepos: _*),
       countIssue(condition.copy(state = "closed"), true, allRepos: _*),
       filter match {
-        case "assigned"  => condition.copy(assigned  = Some(userName))
+        case "assigned"  => condition.copy(assigned  = Some(Some(userName)))
         case "mentioned" => condition.copy(mentioned = Some(userName))
         case _           => condition.copy(author    = Some(userName))
       },
       filter,
-      getGroupNames(userName))
+      getGroupNames(userName),
+      Nil,
+      getUserRepositories(userName, withoutPhysicalInfo = true))
   }
 
 

src/main/scala/gitbucket/core/controller/FileUploadController.scala

@@ -1,18 +1,26 @@
 package gitbucket.core.controller
 
-import gitbucket.core.util.{Keys, FileUtil}
+import gitbucket.core.model.Account
+import gitbucket.core.service.{AccountService, RepositoryService}
+import gitbucket.core.servlet.Database
+import gitbucket.core.util._
 import gitbucket.core.util.ControlUtil._
 import gitbucket.core.util.Directory._
+import gitbucket.core.util.Implicits._
+import org.eclipse.jgit.api.Git
+import org.eclipse.jgit.dircache.DirCache
+import org.eclipse.jgit.lib.{FileMode, Constants}
+import org.scalatra
 import org.scalatra._
 import org.scalatra.servlet.{MultipartConfig, FileUploadSupport, FileItem}
-import org.apache.commons.io.FileUtils
+import org.apache.commons.io.{IOUtils, FileUtils}
 
 /**
  * Provides Ajax based file upload functionality.
  *
  * This servlet saves uploaded file.
  */
-class FileUploadController extends ScalatraServlet with FileUploadSupport {
+class FileUploadController extends ScalatraServlet with FileUploadSupport with RepositoryService with AccountService {
 
   configureMultipartHandling(MultipartConfig(maxFileSize = Some(3 * 1024 * 1024)))
 
@@ -31,14 +39,71 @@ class FileUploadController extends ScalatraServlet with FileUploadSupport {
     }, FileUtil.isUploadableType)
   }
 
+  post("/wiki/:owner/:repository"){
+    // Don't accept not logged-in users
+    session.get(Keys.Session.LoginAccount).collect { case loginAccount: Account =>
+      val owner      = params("owner")
+      val repository = params("repository")
+
+      // Check whether logged-in user is collaborator
+      collaboratorsOnly(owner, repository, loginAccount){
+        execute({ (file, fileId) =>
+          val fileName = file.getName
+          LockUtil.lock(s"${owner}/${repository}/wiki") {
+            using(Git.open(Directory.getWikiRepositoryDir(owner, repository))) { git =>
+              val builder  = DirCache.newInCore.builder()
+              val inserter = git.getRepository.newObjectInserter()
+              val headId   = git.getRepository.resolve(Constants.HEAD + "^{commit}")
+
+              if(headId != null){
+                JGitUtil.processTree(git, headId){ (path, tree) =>
+                  if(path != fileName){
+                    builder.add(JGitUtil.createDirCacheEntry(path, tree.getEntryFileMode, tree.getEntryObjectId))
+                  }
+                }
+              }
+
+              val bytes = IOUtils.toByteArray(file.getInputStream)
+              builder.add(JGitUtil.createDirCacheEntry(fileName, FileMode.REGULAR_FILE, inserter.insert(Constants.OBJ_BLOB, bytes)))
+              builder.finish()
+
+              val newHeadId = JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter),
+                Constants.HEAD, loginAccount.userName, loginAccount.mailAddress, s"Uploaded ${fileName}")
+
+              fileName
+            }
+          }
+        }, FileUtil.isUploadableType)
+      }
+    } getOrElse BadRequest()
+  }
+
+  post("/import") {
+    import JDBCUtil._
+    session.get(Keys.Session.LoginAccount).collect { case loginAccount: Account if loginAccount.isAdmin =>
+      execute({ (file, fileId) =>
+        request2Session(request).conn.importAsSQL(file.getInputStream)
+      }, _ => true)
+    }
+    redirect("/admin/data")
+  }
+
+  private def collaboratorsOnly(owner: String, repository: String, loginAccount: Account)(action: => Any): Any = {
+    implicit val session = Database.getSession(request)
+    loginAccount match {
+      case x if(x.isAdmin) => action
+      case x if(getCollaborators(owner, repository).contains(x.userName)) => action
+      case _ => BadRequest()
+    }
+  }
+
   private def execute(f: (FileItem, String) => Unit, mimeTypeChcker: (String) => Boolean) = fileParams.get("file") match {
     case Some(file) if(mimeTypeChcker(file.name)) =>
       defining(FileUtil.generateFileId){ fileId =>
         f(file, fileId)
-
         Ok(fileId)
       }
-    case _ => BadRequest
+    case _ => BadRequest()
   }
 
 }

src/main/scala/gitbucket/core/controller/IndexController.scala

@@ -1,14 +1,13 @@
 package gitbucket.core.controller
 
-import gitbucket.core.api._
 import gitbucket.core.helper.xml
 import gitbucket.core.model.Account
-import gitbucket.core.service.{RepositoryService, ActivityService, AccountService, RepositorySearchService, IssuesService}
+import gitbucket.core.service._
 import gitbucket.core.util.Implicits._
 import gitbucket.core.util.ControlUtil._
-import gitbucket.core.util.{LDAPUtil, Keys, UsersAuthenticator, ReferrerAuthenticator, StringUtil}
-
+import gitbucket.core.util.{Keys, LDAPUtil, ReferrerAuthenticator, StringUtil, UsersAuthenticator}
 import io.github.gitbucket.scalatra.forms._
+import org.scalatra.Ok
 
 
 class IndexController extends IndexControllerBase 
@@ -37,23 +36,11 @@ trait IndexControllerBase extends ControllerBase {
 
 
   get("/"){
-    val loginAccount = context.loginAccount
-    if(loginAccount.isEmpty) {
-        gitbucket.core.html.index(getRecentActivities(),
-            getVisibleRepositories(loginAccount, withoutPhysicalInfo = true),
-            loginAccount.map{ account => getUserRepositories(account.userName, withoutPhysicalInfo = true) }.getOrElse(Nil)
-        )
-    } else {
-        val loginUserName = loginAccount.get.userName
-        val loginUserGroups = getGroupsByUserName(loginUserName)
-        var visibleOwnerSet : Set[String] = Set(loginUserName)
-        
-        visibleOwnerSet ++= loginUserGroups
-
-        gitbucket.core.html.index(getRecentActivitiesByOwners(visibleOwnerSet),
-            getVisibleRepositories(loginAccount, withoutPhysicalInfo = true),
-            loginAccount.map{ account => getUserRepositories(account.userName, withoutPhysicalInfo = true) }.getOrElse(Nil) 
-        )
+    context.loginAccount.map { account =>
+      val visibleOwnerSet: Set[String] = Set(account.userName) ++ getGroupsByUserName(account.userName)
+      gitbucket.core.html.index(getRecentActivitiesByOwners(visibleOwnerSet), Nil, getUserRepositories(account.userName, withoutPhysicalInfo = true))
+    }.getOrElse {
+      gitbucket.core.html.index(getRecentActivities(), getVisibleRepositories(None, withoutPhysicalInfo = true), Nil)
     }
   }
 
@@ -82,6 +69,15 @@ trait IndexControllerBase extends ControllerBase {
     xml.feed(getRecentActivities())
   }
 
+  get("/sidebar-collapse"){
+    if(params("collapse") == "true"){
+      session.setAttribute("sidebar-collapse", "true")
+    }  else {
+      session.setAttribute("sidebar-collapse", null)
+    }
+    Ok()
+  }
+
   /**
    * Set account information into HttpSession and redirect.
    */
@@ -109,27 +105,35 @@ trait IndexControllerBase extends ControllerBase {
    */
   get("/_user/proposals")(usersOnly {
     contentType = formats("json")
+    val user  = params("user").toBoolean
+    val group = params("group").toBoolean
     org.json4s.jackson.Serialization.write(
-      Map("options" -> getAllUsers(false).filter(!_.isGroupAccount).map(_.userName).toArray)
+      Map("options" -> (
+        getAllUsers(false)
+          .withFilter { t => (user, group) match {
+            case (true, true) => true
+            case (true, false) => !t.isGroupAccount
+            case (false, true) => t.isGroupAccount
+            case (false, false) => false
+          }}.map { t => t.userName }
+      ))
     )
   })
 
   /**
-   * JSON API for checking user existence.
+   * JSON API for checking user or group existence.
+   * Returns a single string which is any of "group", "user" or "".
    */
   post("/_user/existence")(usersOnly {
-    getAccountByUserName(params("userName")).isDefined
+    getAccountByUserName(params("userName")).map { account =>
+      if(account.isGroupAccount) "group" else "user"
+    } getOrElse ""
   })
 
-  // TODO Move to RepositoryViwerController?
-  post("/search", searchForm){ form =>
-    redirect(s"/${form.owner}/${form.repository}/search?q=${StringUtil.urlEncode(form.query)}")
-  }
-
   // TODO Move to RepositoryViwerController?
   get("/:owner/:repository/search")(referrersOnly { repository =>
-    defining(params("q").trim, params.getOrElse("type", "code")){ case (query, target) =>
-      val page   = try {
+    defining(params.getOrElse("q", "").trim, params.getOrElse("type", "code")){ case (query, target) =>
+      val page = try {
         val i = params.getOrElse("page", "1").toInt
         if(i <= 0) 1 else i
       } catch {
@@ -138,15 +142,31 @@ trait IndexControllerBase extends ControllerBase {
 
       target.toLowerCase match {
         case "issue" => gitbucket.core.search.html.issues(
-          searchIssues(repository.owner, repository.name, query),
-          countFiles(repository.owner, repository.name, query),
+          if(query.nonEmpty) searchIssues(repository.owner, repository.name, query) else Nil,
+          query, page, repository)
+
+        case "wiki" => gitbucket.core.search.html.wiki(
+          if(query.nonEmpty) searchWikiPages(repository.owner, repository.name, query) else Nil,
           query, page, repository)
 
         case _ => gitbucket.core.search.html.code(
-          searchFiles(repository.owner, repository.name, query),
-          countIssues(repository.owner, repository.name, query),
+          if(query.nonEmpty) searchFiles(repository.owner, repository.name, query) else Nil,
           query, page, repository)
       }
     }
   })
+
+  get("/search"){
+    val query = params.getOrElse("query", "").trim.toLowerCase
+    val visibleRepositories = getVisibleRepositories(context.loginAccount, None)
+    val repositories = visibleRepositories.filter { repository =>
+      repository.name.toLowerCase.indexOf(query) >= 0 || repository.owner.toLowerCase.indexOf(query) >= 0
+    }
+    context.loginAccount.map { account =>
+      gitbucket.core.search.html.repositories(query, repositories, Nil, getUserRepositories(account.userName, withoutPhysicalInfo = true))
+    }.getOrElse {
+      gitbucket.core.search.html.repositories(query, repositories, visibleRepositories, Nil)
+    }
+  }
+
 }

src/main/scala/gitbucket/core/controller/IssuesController.scala

@@ -2,24 +2,45 @@ package gitbucket.core.controller
 
 import gitbucket.core.issues.html
 import gitbucket.core.service.IssuesService._
+import gitbucket.core.service.RepositoryService.RepositoryInfo
 import gitbucket.core.service._
 import gitbucket.core.util.ControlUtil._
 import gitbucket.core.util.Implicits._
 import gitbucket.core.util._
 import gitbucket.core.view
 import gitbucket.core.view.Markdown
-
 import io.github.gitbucket.scalatra.forms._
 import org.scalatra.Ok
 
 
 class IssuesController extends IssuesControllerBase
-  with IssuesService with RepositoryService with AccountService with LabelsService with MilestonesService with ActivityService with HandleCommentService
-  with ReadableUsersAuthenticator with ReferrerAuthenticator with CollaboratorsAuthenticator with PullRequestService with WebHookIssueCommentService
+  with IssuesService
+  with RepositoryService
+  with AccountService
+  with LabelsService
+  with MilestonesService
+  with ActivityService
+  with HandleCommentService
+  with ReadableUsersAuthenticator
+  with ReferrerAuthenticator
+  with WritableUsersAuthenticator
+  with PullRequestService
+  with WebHookIssueCommentService
+  with CommitsService
 
 trait IssuesControllerBase extends ControllerBase {
-  self: IssuesService with RepositoryService with AccountService with LabelsService with MilestonesService with ActivityService with HandleCommentService
-    with ReadableUsersAuthenticator with ReferrerAuthenticator with CollaboratorsAuthenticator with PullRequestService with WebHookIssueCommentService =>
+  self: IssuesService
+    with RepositoryService
+    with AccountService
+    with LabelsService
+    with MilestonesService
+    with ActivityService
+    with HandleCommentService
+    with ReadableUsersAuthenticator
+    with ReferrerAuthenticator
+    with WritableUsersAuthenticator
+    with PullRequestService
+    with WebHookIssueCommentService =>
 
   case class IssueCreateForm(title: String, content: Option[String],
     assignedUserName: Option[String], milestoneId: Option[Int], labelNames: Option[String])
@@ -67,145 +88,149 @@ trait IssuesControllerBase extends ControllerBase {
           _,
           getComments(owner, name, issueId.toInt),
           getIssueLabels(owner, name, issueId.toInt),
-          (getCollaborators(owner, name) ::: (if(getAccountByUserName(owner).get.isGroupAccount) Nil else List(owner))).sorted,
+          getAssignableUserNames(owner, name),
           getMilestonesWithIssueCount(owner, name),
           getLabels(owner, name),
-          hasWritePermission(owner, name, context.loginAccount),
+          isEditable(repository),
+          isManageable(repository),
           repository)
-      } getOrElse NotFound
+      } getOrElse NotFound()
     }
   })
 
   get("/:owner/:repository/issues/new")(readableUsersOnly { repository =>
-    defining(repository.owner, repository.name){ case (owner, name) =>
-      html.create(
-        (getCollaborators(owner, name) ::: (if(getAccountByUserName(owner).get.isGroupAccount) Nil else List(owner))).sorted,
+    if(isEditable(repository)){ // TODO Should this check is provided by authenticator?
+      defining(repository.owner, repository.name){ case (owner, name) =>
+        html.create(
+          getAssignableUserNames(owner, name),
           getMilestones(owner, name),
           getLabels(owner, name),
-          hasWritePermission(owner, name, context.loginAccount),
+          isManageable(repository),
           repository)
-    }
+      }
+    } else Unauthorized()
   })
 
   post("/:owner/:repository/issues/new", issueCreateForm)(readableUsersOnly { (form, repository) =>
-    defining(repository.owner, repository.name){ case (owner, name) =>
-      val writable = hasWritePermission(owner, name, context.loginAccount)
-      val userName = context.loginAccount.get.userName
+    if(isEditable(repository)){ // TODO Should this check is provided by authenticator?
+      defining(repository.owner, repository.name){ case (owner, name) =>
+        val manageable = isManageable(repository)
+        val userName = context.loginAccount.get.userName
 
-      // insert issue
-      val issueId = createIssue(owner, name, userName, form.title, form.content,
-        if(writable) form.assignedUserName else None,
-        if(writable) form.milestoneId else None)
+        // insert issue
+        val issueId = createIssue(owner, name, userName, form.title, form.content,
+          if (manageable) form.assignedUserName else None,
+          if (manageable) form.milestoneId else None)
 
-      // insert labels
-      if(writable){
-        form.labelNames.map { value =>
-          val labels = getLabels(owner, name)
-          value.split(",").foreach { labelName =>
-            labels.find(_.labelName == labelName).map { label =>
-              registerIssueLabel(owner, name, issueId, label.labelId)
+        // insert labels
+        if (manageable) {
+          form.labelNames.map { value =>
+            val labels = getLabels(owner, name)
+            value.split(",").foreach { labelName =>
+              labels.find(_.labelName == labelName).map { label =>
+                registerIssueLabel(owner, name, issueId, label.labelId)
+              }
             }
           }
         }
-      }
 
-      // record activity
-      recordCreateIssueActivity(owner, name, userName, issueId, form.title)
+        // record activity
+        recordCreateIssueActivity(owner, name, userName, issueId, form.title)
 
-      getIssue(owner, name, issueId.toString).foreach { issue =>
-        // extract references and create refer comment
-        createReferComment(owner, name, issue, form.title + " " + form.content.getOrElse(""), context.loginAccount.get)
+        getIssue(owner, name, issueId.toString).foreach { issue =>
+          // extract references and create refer comment
+          createReferComment(owner, name, issue, form.title + " " + form.content.getOrElse(""), context.loginAccount.get)
 
-        // call web hooks
-        callIssuesWebHook("opened", repository, issue, context.baseUrl, context.loginAccount.get)
+          // call web hooks
+          callIssuesWebHook("opened", repository, issue, context.baseUrl, context.loginAccount.get)
 
-        // notifications
-        Notifier().toNotify(repository, issue, form.content.getOrElse("")){
-          Notifier.msgIssue(s"${context.baseUrl}/${owner}/${name}/issues/${issueId}")
+          // notifications
+          Notifier().toNotify(repository, issue, form.content.getOrElse("")) {
+            Notifier.msgIssue(s"${context.baseUrl}/${owner}/${name}/issues/${issueId}")
+          }
         }
-      }
 
-      redirect(s"/${owner}/${name}/issues/${issueId}")
-    }
+        redirect(s"/${owner}/${name}/issues/${issueId}")
+      }
+    } else Unauthorized()
   })
 
   ajaxPost("/:owner/:repository/issues/edit_title/:id", issueTitleEditForm)(readableUsersOnly { (title, repository) =>
     defining(repository.owner, repository.name){ case (owner, name) =>
       getIssue(owner, name, params("id")).map { issue =>
-        if(isEditable(owner, name, issue.openedUserName)){
+        if(isEditableContent(owner, name, issue.openedUserName)){
           // update issue
           updateIssue(owner, name, issue.issueId, title, issue.content)
           // extract references and create refer comment
           createReferComment(owner, name, issue.copy(title = title), title, context.loginAccount.get)
 
           redirect(s"/${owner}/${name}/issues/_data/${issue.issueId}")
-        } else Unauthorized
-      } getOrElse NotFound
+        } else Unauthorized()
+      } getOrElse NotFound()
     }
   })
 
   ajaxPost("/:owner/:repository/issues/edit/:id", issueEditForm)(readableUsersOnly { (content, repository) =>
     defining(repository.owner, repository.name){ case (owner, name) =>
       getIssue(owner, name, params("id")).map { issue =>
-        if(isEditable(owner, name, issue.openedUserName)){
+        if(isEditableContent(owner, name, issue.openedUserName)){
           // update issue
           updateIssue(owner, name, issue.issueId, issue.title, content)
           // extract references and create refer comment
           createReferComment(owner, name, issue, content.getOrElse(""), context.loginAccount.get)
 
           redirect(s"/${owner}/${name}/issues/_data/${issue.issueId}")
-        } else Unauthorized
-      } getOrElse NotFound
+        } else Unauthorized()
+      } getOrElse NotFound()
     }
   })
 
   post("/:owner/:repository/issue_comments/new", commentForm)(readableUsersOnly { (form, repository) =>
     getIssue(repository.owner, repository.name, form.issueId.toString).flatMap { issue =>
-      val actionOpt = params.get("action").filter(_ => isEditable(issue.userName, issue.repositoryName, issue.openedUserName))
+      val actionOpt = params.get("action").filter(_ => isEditableContent(issue.userName, issue.repositoryName, issue.openedUserName))
       handleComment(issue, Some(form.content), repository, actionOpt) map { case (issue, id) =>
         redirect(s"/${repository.owner}/${repository.name}/${
           if(issue.isPullRequest) "pull" else "issues"}/${form.issueId}#comment-${id}")
       }
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
   post("/:owner/:repository/issue_comments/state", issueStateForm)(readableUsersOnly { (form, repository) =>
     getIssue(repository.owner, repository.name, form.issueId.toString).flatMap { issue =>
-      val actionOpt = params.get("action").filter(_ => isEditable(issue.userName, issue.repositoryName, issue.openedUserName))
+      val actionOpt = params.get("action").filter(_ => isEditableContent(issue.userName, issue.repositoryName, issue.openedUserName))
       handleComment(issue, form.content, repository, actionOpt) map { case (issue, id) =>
         redirect(s"/${repository.owner}/${repository.name}/${
           if(issue.isPullRequest) "pull" else "issues"}/${form.issueId}#comment-${id}")
       }
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
   ajaxPost("/:owner/:repository/issue_comments/edit/:id", commentForm)(readableUsersOnly { (form, repository) =>
     defining(repository.owner, repository.name){ case (owner, name) =>
       getComment(owner, name, params("id")).map { comment =>
-        if(isEditable(owner, name, comment.commentedUserName)){
+        if(isEditableContent(owner, name, comment.commentedUserName)){
           updateComment(comment.commentId, form.content)
           redirect(s"/${owner}/${name}/issue_comments/_data/${comment.commentId}")
-        } else Unauthorized
-      } getOrElse NotFound
+        } else Unauthorized()
+      } getOrElse NotFound()
     }
   })
 
   ajaxPost("/:owner/:repository/issue_comments/delete/:id")(readableUsersOnly { repository =>
     defining(repository.owner, repository.name){ case (owner, name) =>
       getComment(owner, name, params("id")).map { comment =>
-        if(isEditable(owner, name, comment.commentedUserName)){
+        if(isEditableContent(owner, name, comment.commentedUserName)){
           Ok(deleteComment(comment.commentId))
-        } else Unauthorized
-      } getOrElse NotFound
+        } else Unauthorized()
+      } getOrElse NotFound()
     }
   })
 
   ajaxGet("/:owner/:repository/issues/_data/:id")(readableUsersOnly { repository =>
     getIssue(repository.owner, repository.name, params("id")) map { x =>
-      if(isEditable(x.userName, x.repositoryName, x.openedUserName)){
+      if(isEditableContent(x.userName, x.repositoryName, x.openedUserName)){
         params.get("dataType") collect {
-          case t if t == "html" => html.editissue(
-              x.content, x.issueId, x.userName, x.repositoryName)
+          case t if t == "html" => html.editissue(x.content, x.issueId, repository)
         } getOrElse {
           contentType = formats("json")
           org.json4s.jackson.Serialization.write(
@@ -219,21 +244,20 @@ trait IssuesControllerBase extends ControllerBase {
                 enableAnchor = true,
                 enableLineBreaks = true,
                 enableTaskList = true,
-                hasWritePermission = isEditable(x.userName, x.repositoryName, x.openedUserName)
+                hasWritePermission = true
               )
             )
           )
         }
-      } else Unauthorized
-    } getOrElse NotFound
+      } else Unauthorized()
+    } getOrElse NotFound()
   })
 
   ajaxGet("/:owner/:repository/issue_comments/_data/:id")(readableUsersOnly { repository =>
     getComment(repository.owner, repository.name, params("id")) map { x =>
-      if(isEditable(x.userName, x.repositoryName, x.commentedUserName)){
+      if(isEditableContent(x.userName, x.repositoryName, x.commentedUserName)){
         params.get("dataType") collect {
-          case t if t == "html" => html.editcomment(
-              x.content, x.commentId, x.userName, x.repositoryName)
+          case t if t == "html" => html.editcomment(x.content, x.commentId, repository)
         } getOrElse {
           contentType = formats("json")
           org.json4s.jackson.Serialization.write(
@@ -246,51 +270,51 @@ trait IssuesControllerBase extends ControllerBase {
                 enableAnchor = true,
                 enableLineBreaks = true,
                 enableTaskList = true,
-                hasWritePermission = isEditable(x.userName, x.repositoryName, x.commentedUserName)
+                hasWritePermission = true
               )
             )
           )
         }
-      } else Unauthorized
-    } getOrElse NotFound
+      } else Unauthorized()
+    } getOrElse NotFound()
   })
 
-  ajaxPost("/:owner/:repository/issues/new/label")(collaboratorsOnly { repository =>
+  ajaxPost("/:owner/:repository/issues/new/label")(writableUsersOnly { repository =>
     val labelNames = params("labelNames").split(",")
     val labels = getLabels(repository.owner, repository.name).filter(x => labelNames.contains(x.labelName))
     html.labellist(labels)
   })
 
-  ajaxPost("/:owner/:repository/issues/:id/label/new")(collaboratorsOnly { repository =>
+  ajaxPost("/:owner/:repository/issues/:id/label/new")(writableUsersOnly { repository =>
     defining(params("id").toInt){ issueId =>
       registerIssueLabel(repository.owner, repository.name, issueId, params("labelId").toInt)
       html.labellist(getIssueLabels(repository.owner, repository.name, issueId))
     }
   })
 
-  ajaxPost("/:owner/:repository/issues/:id/label/delete")(collaboratorsOnly { repository =>
+  ajaxPost("/:owner/:repository/issues/:id/label/delete")(writableUsersOnly { repository =>
     defining(params("id").toInt){ issueId =>
       deleteIssueLabel(repository.owner, repository.name, issueId, params("labelId").toInt)
       html.labellist(getIssueLabels(repository.owner, repository.name, issueId))
     }
   })
 
-  ajaxPost("/:owner/:repository/issues/:id/assign")(collaboratorsOnly { repository =>
+  ajaxPost("/:owner/:repository/issues/:id/assign")(writableUsersOnly { repository =>
     updateAssignedUserName(repository.owner, repository.name, params("id").toInt, assignedUserName("assignedUserName"))
     Ok("updated")
   })
 
-  ajaxPost("/:owner/:repository/issues/:id/milestone")(collaboratorsOnly { repository =>
+  ajaxPost("/:owner/:repository/issues/:id/milestone")(writableUsersOnly { repository =>
     updateMilestoneId(repository.owner, repository.name, params("id").toInt, milestoneId("milestoneId"))
     milestoneId("milestoneId").map { milestoneId =>
       getMilestonesWithIssueCount(repository.owner, repository.name)
           .find(_._1.milestoneId == milestoneId).map { case (_, openCount, closeCount) =>
         gitbucket.core.issues.milestones.html.progress(openCount + closeCount, closeCount)
-      } getOrElse NotFound
+      } getOrElse NotFound()
     } getOrElse Ok()
   })
 
-  post("/:owner/:repository/issues/batchedit/state")(collaboratorsOnly { repository =>
+  post("/:owner/:repository/issues/batchedit/state")(writableUsersOnly { repository =>
     defining(params.get("value")){ action =>
       action match {
         case Some("open")  => executeBatch(repository) { issueId =>
@@ -308,17 +332,17 @@ trait IssuesControllerBase extends ControllerBase {
     }
   })
 
-  post("/:owner/:repository/issues/batchedit/label")(collaboratorsOnly { repository =>
+  post("/:owner/:repository/issues/batchedit/label")(writableUsersOnly { repository =>
     params("value").toIntOpt.map{ labelId =>
       executeBatch(repository) { issueId =>
         getIssueLabel(repository.owner, repository.name, issueId, labelId) getOrElse {
           registerIssueLabel(repository.owner, repository.name, issueId, labelId)
         }
       }
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
-  post("/:owner/:repository/issues/batchedit/assign")(collaboratorsOnly { repository =>
+  post("/:owner/:repository/issues/batchedit/assign")(writableUsersOnly { repository =>
     defining(assignedUserName("value")){ value =>
       executeBatch(repository) {
         updateAssignedUserName(repository.owner, repository.name, _, value)
@@ -326,7 +350,7 @@ trait IssuesControllerBase extends ControllerBase {
     }
   })
 
-  post("/:owner/:repository/issues/batchedit/milestone")(collaboratorsOnly { repository =>
+  post("/:owner/:repository/issues/batchedit/milestone")(writableUsersOnly { repository =>
     defining(milestoneId("value")){ value =>
       executeBatch(repository) {
         updateMilestoneId(repository.owner, repository.name, _, value)
@@ -342,15 +366,12 @@ trait IssuesControllerBase extends ControllerBase {
           RawData(FileUtil.getMimeType(file.getName), file)
         }
       case _ => None
-    }) getOrElse NotFound
+    }) getOrElse NotFound()
   })
 
   val assignedUserName = (key: String) => params.get(key) filter (_.trim != "")
   val milestoneId: String => Option[Int] = (key: String) => params.get(key).flatMap(_.toIntOpt)
 
-  private def isEditable(owner: String, repository: String, author: String)(implicit context: Context): Boolean =
-    hasWritePermission(owner, repository, context.loginAccount) || author == context.loginAccount.get.userName
-
   private def executeBatch(repository: RepositoryService.RepositoryInfo)(execute: Int => Unit) = {
     params("checked").split(',') map(_.toInt) foreach execute
     params("from") match {
@@ -361,37 +382,51 @@ trait IssuesControllerBase extends ControllerBase {
 
   private def searchIssues(repository: RepositoryService.RepositoryInfo) = {
     defining(repository.owner, repository.name){ case (owner, repoName) =>
-      val page       = IssueSearchCondition.page(request)
-      val sessionKey = Keys.Session.Issues(owner, repoName)
+      val page = IssueSearchCondition.page(request)
 
       // retrieve search condition
-      val condition = session.putAndGet(sessionKey,
-        if(request.hasQueryString){
-          val q = request.getParameter("q")
-          if(q == null || q.trim.isEmpty){
-            IssueSearchCondition(request)
-          } else {
-            IssueSearchCondition(q, getMilestones(owner, repoName).map(x => (x.title, x.milestoneId)).toMap)
-          }
-        } else session.getAs[IssueSearchCondition](sessionKey).getOrElse(IssueSearchCondition())
-      )
+      val condition = IssueSearchCondition(request)
 
       html.list(
           "issues",
           searchIssue(condition, false, (page - 1) * IssueLimit, IssueLimit, owner -> repoName),
           page,
-          if(!getAccountByUserName(owner).exists(_.isGroupAccount)){
-            (getCollaborators(owner, repoName) :+ owner).sorted
-          } else {
-            getCollaborators(owner, repoName)
-          },
+          getAssignableUserNames(owner, repoName),
           getMilestones(owner, repoName),
           getLabels(owner, repoName),
           countIssue(condition.copy(state = "open"  ), false, owner -> repoName),
           countIssue(condition.copy(state = "closed"), false, owner -> repoName),
           condition,
           repository,
-          hasWritePermission(owner, repoName, context.loginAccount))
+          isEditable(repository),
+          isManageable(repository))
     }
   }
+
+  /**
+   * Tests whether an logged-in user can manage issues.
+   */
+  private def isManageable(repository: RepositoryInfo)(implicit context: Context): Boolean = {
+    hasDeveloperRole(repository.owner, repository.name, context.loginAccount)
+  }
+
+  /**
+   * Tests whether an logged-in user can post issues.
+   */
+  private def isEditable(repository: RepositoryInfo)(implicit context: Context): Boolean = {
+    repository.repository.options.issuesOption match {
+      case "ALL"     => !repository.repository.isPrivate && context.loginAccount.isDefined
+      case "PUBLIC"  => hasGuestRole(repository.owner, repository.name, context.loginAccount)
+      case "PRIVATE" => hasDeveloperRole(repository.owner, repository.name, context.loginAccount)
+      case "DISABLE" => false
+    }
+  }
+
+  /**
+   * Tests whether an issue or a comment is editable by a logged-in user.
+   */
+  private def isEditableContent(owner: String, repository: String, author: String)(implicit context: Context): Boolean = {
+    hasDeveloperRole(owner, repository, context.loginAccount) || author == context.loginAccount.get.userName
+  }
+
 }

src/main/scala/gitbucket/core/controller/LabelsController.scala

@@ -2,7 +2,7 @@ package gitbucket.core.controller
 
 import gitbucket.core.issues.labels.html
 import gitbucket.core.service.{RepositoryService, AccountService, IssuesService, LabelsService}
-import gitbucket.core.util.{ReferrerAuthenticator, CollaboratorsAuthenticator}
+import gitbucket.core.util.{ReferrerAuthenticator, WritableUsersAuthenticator}
 import gitbucket.core.util.Implicits._
 import io.github.gitbucket.scalatra.forms._
 import org.scalatra.i18n.Messages
@@ -10,11 +10,11 @@ import org.scalatra.Ok
 
 class LabelsController extends LabelsControllerBase
   with LabelsService with IssuesService with RepositoryService with AccountService
-with ReferrerAuthenticator with CollaboratorsAuthenticator
+with ReferrerAuthenticator with WritableUsersAuthenticator
 
 trait LabelsControllerBase extends ControllerBase {
   self: LabelsService with IssuesService with RepositoryService
-    with ReferrerAuthenticator with CollaboratorsAuthenticator =>
+    with ReferrerAuthenticator with WritableUsersAuthenticator =>
 
   case class LabelForm(labelName: String, color: String)
 
@@ -23,45 +23,46 @@ trait LabelsControllerBase extends ControllerBase {
     "labelColor" -> trim(label("Color",      text(required, color)))
   )(LabelForm.apply)
 
+
   get("/:owner/:repository/issues/labels")(referrersOnly { repository =>
     html.list(
       getLabels(repository.owner, repository.name),
       countIssueGroupByLabels(repository.owner, repository.name, IssuesService.IssueSearchCondition(), Map.empty),
       repository,
-      hasWritePermission(repository.owner, repository.name, context.loginAccount))
+      hasDeveloperRole(repository.owner, repository.name, context.loginAccount))
   })
 
-  ajaxGet("/:owner/:repository/issues/labels/new")(collaboratorsOnly { repository =>
+  ajaxGet("/:owner/:repository/issues/labels/new")(writableUsersOnly { repository =>
     html.edit(None, repository)
   })
 
-  ajaxPost("/:owner/:repository/issues/labels/new", labelForm)(collaboratorsOnly { (form, repository) =>
+  ajaxPost("/:owner/:repository/issues/labels/new", labelForm)(writableUsersOnly { (form, repository) =>
     val labelId = createLabel(repository.owner, repository.name, form.labelName, form.color.substring(1))
     html.label(
       getLabel(repository.owner, repository.name, labelId).get,
       // TODO futility
       countIssueGroupByLabels(repository.owner, repository.name, IssuesService.IssueSearchCondition(), Map.empty),
       repository,
-      hasWritePermission(repository.owner, repository.name, context.loginAccount))
+      hasDeveloperRole(repository.owner, repository.name, context.loginAccount))
   })
 
-  ajaxGet("/:owner/:repository/issues/labels/:labelId/edit")(collaboratorsOnly { repository =>
+  ajaxGet("/:owner/:repository/issues/labels/:labelId/edit")(writableUsersOnly { repository =>
     getLabel(repository.owner, repository.name, params("labelId").toInt).map { label =>
       html.edit(Some(label), repository)
     } getOrElse NotFound()
   })
 
-  ajaxPost("/:owner/:repository/issues/labels/:labelId/edit", labelForm)(collaboratorsOnly { (form, repository) =>
+  ajaxPost("/:owner/:repository/issues/labels/:labelId/edit", labelForm)(writableUsersOnly { (form, repository) =>
     updateLabel(repository.owner, repository.name, params("labelId").toInt, form.labelName, form.color.substring(1))
     html.label(
       getLabel(repository.owner, repository.name, params("labelId").toInt).get,
       // TODO futility
       countIssueGroupByLabels(repository.owner, repository.name, IssuesService.IssueSearchCondition(), Map.empty),
       repository,
-      hasWritePermission(repository.owner, repository.name, context.loginAccount))
+      hasDeveloperRole(repository.owner, repository.name, context.loginAccount))
   })
 
-  ajaxPost("/:owner/:repository/issues/labels/:labelId/delete")(collaboratorsOnly { repository =>
+  ajaxPost("/:owner/:repository/issues/labels/:labelId/delete")(writableUsersOnly { repository =>
     deleteLabel(repository.owner, repository.name, params("labelId").toInt)
     Ok()
   })
@@ -84,7 +85,11 @@ trait LabelsControllerBase extends ControllerBase {
     override def validate(name: String, value: String, params: Map[String, String], messages: Messages): Option[String] = {
       val owner = params("owner")
       val repository = params("repository")
-      getLabel(owner, repository, value).map(_ => "Name has already been taken.")
+      params.get("labelId").map { labelId =>
+        getLabel(owner, repository, value).filter(_.labelId != labelId.toInt).map(_ => "Name has already been taken.")
+      }.getOrElse {
+        getLabel(owner, repository, value).map(_ => "Name has already been taken.")
+      }
     }
   }
 

src/main/scala/gitbucket/core/controller/MilestonesController.scala

@@ -2,17 +2,17 @@ package gitbucket.core.controller
 
 import gitbucket.core.issues.milestones.html
 import gitbucket.core.service.{RepositoryService, MilestonesService, AccountService}
-import gitbucket.core.util.{ReferrerAuthenticator, CollaboratorsAuthenticator}
+import gitbucket.core.util.{ReferrerAuthenticator, WritableUsersAuthenticator}
 import gitbucket.core.util.Implicits._
 import io.github.gitbucket.scalatra.forms._
 
 class MilestonesController extends MilestonesControllerBase
   with MilestonesService with RepositoryService with AccountService
-  with ReferrerAuthenticator with CollaboratorsAuthenticator
+  with ReferrerAuthenticator with WritableUsersAuthenticator
 
 trait MilestonesControllerBase extends ControllerBase {
   self: MilestonesService with RepositoryService
-    with ReferrerAuthenticator with CollaboratorsAuthenticator  =>
+    with ReferrerAuthenticator with WritableUsersAuthenticator  =>
 
   case class MilestoneForm(title: String, description: Option[String], dueDate: Option[java.util.Date])
 
@@ -27,58 +27,58 @@ trait MilestonesControllerBase extends ControllerBase {
       params.getOrElse("state", "open"),
       getMilestonesWithIssueCount(repository.owner, repository.name),
       repository,
-      hasWritePermission(repository.owner, repository.name, context.loginAccount))
+      hasDeveloperRole(repository.owner, repository.name, context.loginAccount))
   })
 
-  get("/:owner/:repository/issues/milestones/new")(collaboratorsOnly {
+  get("/:owner/:repository/issues/milestones/new")(writableUsersOnly {
     html.edit(None, _)
   })
 
-  post("/:owner/:repository/issues/milestones/new", milestoneForm)(collaboratorsOnly { (form, repository) =>
+  post("/:owner/:repository/issues/milestones/new", milestoneForm)(writableUsersOnly { (form, repository) =>
     createMilestone(repository.owner, repository.name, form.title, form.description, form.dueDate)
     redirect(s"/${repository.owner}/${repository.name}/issues/milestones")
   })
 
-  get("/:owner/:repository/issues/milestones/:milestoneId/edit")(collaboratorsOnly { repository =>
+  get("/:owner/:repository/issues/milestones/:milestoneId/edit")(writableUsersOnly { repository =>
     params("milestoneId").toIntOpt.map{ milestoneId =>
       html.edit(getMilestone(repository.owner, repository.name, milestoneId), repository)
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
-  post("/:owner/:repository/issues/milestones/:milestoneId/edit", milestoneForm)(collaboratorsOnly { (form, repository) =>
+  post("/:owner/:repository/issues/milestones/:milestoneId/edit", milestoneForm)(writableUsersOnly { (form, repository) =>
     params("milestoneId").toIntOpt.flatMap{ milestoneId =>
       getMilestone(repository.owner, repository.name, milestoneId).map { milestone =>
         updateMilestone(milestone.copy(title = form.title, description = form.description, dueDate = form.dueDate))
         redirect(s"/${repository.owner}/${repository.name}/issues/milestones")
       }
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
-  get("/:owner/:repository/issues/milestones/:milestoneId/close")(collaboratorsOnly { repository =>
+  get("/:owner/:repository/issues/milestones/:milestoneId/close")(writableUsersOnly { repository =>
     params("milestoneId").toIntOpt.flatMap{ milestoneId =>
       getMilestone(repository.owner, repository.name, milestoneId).map { milestone =>
         closeMilestone(milestone)
         redirect(s"/${repository.owner}/${repository.name}/issues/milestones")
       }
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
-  get("/:owner/:repository/issues/milestones/:milestoneId/open")(collaboratorsOnly { repository =>
+  get("/:owner/:repository/issues/milestones/:milestoneId/open")(writableUsersOnly { repository =>
     params("milestoneId").toIntOpt.flatMap{ milestoneId =>
       getMilestone(repository.owner, repository.name, milestoneId).map { milestone =>
         openMilestone(milestone)
         redirect(s"/${repository.owner}/${repository.name}/issues/milestones")
       }
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
-  get("/:owner/:repository/issues/milestones/:milestoneId/delete")(collaboratorsOnly { repository =>
+  get("/:owner/:repository/issues/milestones/:milestoneId/delete")(writableUsersOnly { repository =>
     params("milestoneId").toIntOpt.flatMap{ milestoneId =>
       getMilestone(repository.owner, repository.name, milestoneId).map { milestone =>
         deleteMilestone(repository.owner, repository.name, milestone.milestoneId)
         redirect(s"/${repository.owner}/${repository.name}/issues/milestones")
       }
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
 }

src/main/scala/gitbucket/core/controller/PullRequestsController.scala

@@ -6,36 +6,32 @@ import gitbucket.core.service.CommitStatusService
 import gitbucket.core.service.MergeService
 import gitbucket.core.service.IssuesService._
 import gitbucket.core.service.PullRequestService._
+import gitbucket.core.service.RepositoryService.RepositoryInfo
 import gitbucket.core.service._
 import gitbucket.core.util.ControlUtil._
 import gitbucket.core.util.Directory._
 import gitbucket.core.util.Implicits._
-import gitbucket.core.util.JGitUtil._
 import gitbucket.core.util._
-import gitbucket.core.view
-import gitbucket.core.view.helpers
-
 import io.github.gitbucket.scalatra.forms._
 import org.eclipse.jgit.api.Git
 import org.eclipse.jgit.lib.PersonIdent
-import org.slf4j.LoggerFactory
 
 import scala.collection.JavaConverters._
 
 
 class PullRequestsController extends PullRequestsControllerBase
   with RepositoryService with AccountService with IssuesService with PullRequestService with MilestonesService with LabelsService
-  with CommitsService with ActivityService with WebHookPullRequestService with ReferrerAuthenticator with CollaboratorsAuthenticator
+  with CommitsService with ActivityService with WebHookPullRequestService
+  with ReadableUsersAuthenticator with ReferrerAuthenticator with WritableUsersAuthenticator
   with CommitStatusService with MergeService with ProtectedBranchService
 
 
 trait PullRequestsControllerBase extends ControllerBase {
   self: RepositoryService with AccountService with IssuesService with MilestonesService with LabelsService
-    with CommitsService with ActivityService with PullRequestService with WebHookPullRequestService with ReferrerAuthenticator with CollaboratorsAuthenticator
+    with CommitsService with ActivityService with PullRequestService with WebHookPullRequestService
+    with ReadableUsersAuthenticator with ReferrerAuthenticator with WritableUsersAuthenticator
     with CommitStatusService with MergeService with ProtectedBranchService =>
 
-  private val logger = LoggerFactory.getLogger(classOf[PullRequestsControllerBase])
-
   val pullRequestForm = mapping(
     "title"                 -> trim(label("Title"  , text(required, maxlength(100)))),
     "content"               -> trim(label("Content", optional(text()))),
@@ -94,17 +90,18 @@ trait PullRequestsControllerBase extends ControllerBase {
             (commits.flatten.map(commit => getCommitComments(owner, name, commit.id, true)).flatten.toList ::: getComments(owner, name, issueId))
               .sortWith((a, b) => a.registeredDate before b.registeredDate),
             getIssueLabels(owner, name, issueId),
-            (getCollaborators(owner, name) ::: (if(getAccountByUserName(owner).get.isGroupAccount) Nil else List(owner))).sorted,
+            getAssignableUserNames(owner, name),
             getMilestonesWithIssueCount(owner, name),
             getLabels(owner, name),
             commits,
             diffs,
-            hasWritePermission(owner, name, context.loginAccount),
+            isEditable(repository),
+            isManageable(repository),
             repository,
             flash.toMap.map(f => f._1 -> f._2.toString))
         }
       }
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
   ajaxGet("/:owner/:repository/pull/:id/mergeguide")(referrersOnly { repository =>
@@ -115,7 +112,7 @@ trait PullRequestsControllerBase extends ControllerBase {
         val hasConflict = LockUtil.lock(s"${owner}/${name}"){
           checkConflict(owner, name, pullreq.branch, issueId)
         }
-        val hasMergePermission = hasWritePermission(owner, name, context.loginAccount)
+        val hasMergePermission = hasDeveloperRole(owner, name, context.loginAccount)
         val branchProtection = getProtectedBranchInfo(owner, name, pullreq.branch)
         val mergeStatus = PullRequestService.MergeStatus(
            hasConflict         = hasConflict,
@@ -125,7 +122,7 @@ trait PullRequestsControllerBase extends ControllerBase {
            needStatusCheck     = context.loginAccount.map{ u =>
                                    branchProtection.needStatusCheck(u.userName)
                                  }.getOrElse(true),
-           hasUpdatePermission = hasWritePermission(pullreq.requestUserName, pullreq.requestRepositoryName, context.loginAccount) &&
+           hasUpdatePermission = hasDeveloperRole(pullreq.requestUserName, pullreq.requestRepositoryName, context.loginAccount) &&
                                    context.loginAccount.map{ u =>
                                      !getProtectedBranchInfo(pullreq.requestUserName, pullreq.requestRepositoryName, pullreq.requestBranch).needStatusCheck(u.userName)
                                    }.getOrElse(false),
@@ -138,10 +135,10 @@ trait PullRequestsControllerBase extends ControllerBase {
           repository,
           getRepository(pullreq.requestUserName, pullreq.requestRepositoryName).get)
       }
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
-  get("/:owner/:repository/pull/:id/delete/*")(collaboratorsOnly { repository =>
+  get("/:owner/:repository/pull/:id/delete/*")(writableUsersOnly { repository =>
     params("id").toIntOpt.map { issueId =>
       val branchName = multiParams("splat").head
       val userName   = context.loginAccount.get.userName
@@ -153,32 +150,32 @@ trait PullRequestsControllerBase extends ControllerBase {
       }
       createComment(repository.owner, repository.name, userName, issueId, branchName, "delete_branch")
       redirect(s"/${repository.owner}/${repository.name}/pull/${issueId}")
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
-  post("/:owner/:repository/pull/:id/update_branch")(referrersOnly { baseRepository =>
+  post("/:owner/:repository/pull/:id/update_branch")(writableUsersOnly { baseRepository =>
     (for {
       issueId <- params("id").toIntOpt
       loginAccount <- context.loginAccount
       (issue, pullreq) <- getPullRequest(baseRepository.owner, baseRepository.name, issueId)
       owner = pullreq.requestUserName
       name  = pullreq.requestRepositoryName
-      if hasWritePermission(owner, name, context.loginAccount)
+      if hasDeveloperRole(owner, name, context.loginAccount)
     } yield {
+      val repository = getRepository(owner, name).get
       val branchProtection = getProtectedBranchInfo(owner, name, pullreq.requestBranch)
       if(branchProtection.needStatusCheck(loginAccount.userName)){
         flash += "error" -> s"branch ${pullreq.requestBranch} is protected need status check."
       } else {
-        val repository = getRepository(owner, name).get
         LockUtil.lock(s"${owner}/${name}"){
           val alias = if(pullreq.repositoryName == pullreq.requestRepositoryName && pullreq.userName == pullreq.requestUserName){
             pullreq.branch
-          }else{
+          } else {
             s"${pullreq.userName}:${pullreq.branch}"
           }
           val existIds = using(Git.open(Directory.getRepositoryDir(owner, name))) { git => JGitUtil.getAllCommitIds(git) }.toSet
           pullRemote(owner, name, pullreq.requestBranch, pullreq.userName, pullreq.repositoryName, pullreq.branch, loginAccount,
-                     "Merge branch '${alias}' into ${pullreq.requestBranch}") match {
+                     s"Merge branch '${alias}' into ${pullreq.requestBranch}") match {
             case None => // conflict
               flash += "error" -> s"Can't automatic merging branch '${alias}' into ${pullreq.requestBranch}."
             case Some(oldId) =>
@@ -187,11 +184,10 @@ trait PullRequestsControllerBase extends ControllerBase {
 
               using(Git.open(Directory.getRepositoryDir(owner, name))) { git =>
                 //  after update branch
-
                 val newCommitId = git.getRepository.resolve(s"refs/heads/${pullreq.requestBranch}")
                 val commits = git.log.addRange(oldId, newCommitId).call.iterator.asScala.map(c => new JGitUtil.CommitInfo(c)).toList
 
-                commits.foreach{ commit =>
+                commits.foreach { commit =>
                   if(!existIds.contains(commit.id)){
                     createIssueComment(owner, name, commit)
                   }
@@ -202,7 +198,7 @@ trait PullRequestsControllerBase extends ControllerBase {
 
                 // close issue by commit message
                 if(pullreq.requestBranch == repository.repository.defaultBranch){
-                  commits.map{ commit =>
+                  commits.map { commit =>
                     closeIssuesFromMessage(commit.fullMessage, loginAccount.userName, owner, name)
                   }
                 }
@@ -220,12 +216,13 @@ trait PullRequestsControllerBase extends ControllerBase {
               flash += "info" -> s"Merge branch '${alias}' into ${pullreq.requestBranch}"
           }
         }
-        redirect(s"/${repository.owner}/${repository.name}/pull/${issueId}")
       }
-    }) getOrElse NotFound
+      redirect(s"/${repository.owner}/${repository.name}/pull/${issueId}")
+
+    }) getOrElse NotFound()
   })
 
-  post("/:owner/:repository/pull/:id/merge", mergeForm)(collaboratorsOnly { (form, repository) =>
+  post("/:owner/:repository/pull/:id/merge", mergeForm)(writableUsersOnly { (form, repository) =>
     params("id").toIntOpt.flatMap { issueId =>
       val owner = repository.owner
       val name  = repository.name
@@ -255,10 +252,7 @@ trait PullRequestsControllerBase extends ControllerBase {
               commits.flatten.foreach { commit =>
                 closeIssuesFromMessage(commit.fullMessage, loginAccount.userName, owner, name)
               }
-              issue.content match {
-                case Some(content) => closeIssuesFromMessage(content, loginAccount.userName, owner, name)
-                case _ =>
-              }
+              closeIssuesFromMessage(issue.title + " " + issue.content.getOrElse(""), loginAccount.userName, owner, name)
               closeIssuesFromMessage(form.message, loginAccount.userName, owner, name)
             }
 
@@ -276,7 +270,7 @@ trait PullRequestsControllerBase extends ControllerBase {
           }
         }
       }
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
   get("/:owner/:repository/compare")(referrersOnly { forkedRepository =>
@@ -293,7 +287,7 @@ trait PullRequestsControllerBase extends ControllerBase {
 
             redirect(s"/${forkedRepository.owner}/${forkedRepository.name}/compare/${originUserName}:${oldBranch}...${newBranch}")
           }
-        } getOrElse NotFound
+        } getOrElse NotFound()
       }
       case _ => {
         using(Git.open(getRepositoryDir(forkedRepository.owner, forkedRepository.name))){ git =>
@@ -354,7 +348,15 @@ trait PullRequestsControllerBase extends ControllerBase {
               originRepository.owner, originRepository.name, oldId.getName,
               forkedRepository.owner, forkedRepository.name, newId.getName)
 
+            val title = if(commits.flatten.length == 1){
+              commits.flatten.head.shortMessage
+            } else {
+              val text = forkedId.replaceAll("[\\-_]", " ")
+              text.substring(0, 1).toUpperCase + text.substring(1)
+            }
+
             html.compare(
+              title,
               commits,
               diffs,
               (forkedRepository.repository.originUserName, forkedRepository.repository.originRepositoryName) match {
@@ -369,8 +371,8 @@ trait PullRequestsControllerBase extends ControllerBase {
               forkedRepository,
               originRepository,
               forkedRepository,
-              hasWritePermission(originRepository.owner, originRepository.name, context.loginAccount),
-              (getCollaborators(originRepository.owner, originRepository.name) ::: (if(getAccountByUserName(originRepository.owner).get.isGroupAccount) Nil else List(originRepository.owner))).sorted,
+              hasDeveloperRole(originRepository.owner, originRepository.name, context.loginAccount),
+              getAssignableUserNames(originRepository.owner, originRepository.name),
               getMilestones(originRepository.owner, originRepository.name),
               getLabels(originRepository.owner, originRepository.name)
             )
@@ -381,10 +383,10 @@ trait PullRequestsControllerBase extends ControllerBase {
                      s"${forkedOwner}:${newId.map(_ => forkedId).getOrElse(forkedRepository.repository.defaultBranch)}")
         }
       }
-    }) getOrElse NotFound
+    }) getOrElse NotFound()
   })
 
-  ajaxGet("/:owner/:repository/compare/*...*/mergecheck")(collaboratorsOnly { forkedRepository =>
+  ajaxGet("/:owner/:repository/compare/*...*/mergecheck")(readableUsersOnly { forkedRepository =>
     val Seq(origin, forked) = multiParams("splat")
     val (originOwner, tmpOriginBranch) = parseCompareIdentifie(origin, forkedRepository.owner)
     val (forkedOwner, tmpForkedBranch) = parseCompareIdentifie(forked, forkedRepository.owner)
@@ -411,67 +413,71 @@ trait PullRequestsControllerBase extends ControllerBase {
         }
         html.mergecheck(conflict)
       }
-    }) getOrElse NotFound
+    }) getOrElse NotFound()
   })
 
-  post("/:owner/:repository/pulls/new", pullRequestForm)(referrersOnly { (form, repository) =>
+  post("/:owner/:repository/pulls/new", pullRequestForm)(readableUsersOnly { (form, repository) =>
     defining(repository.owner, repository.name){ case (owner, name) =>
-      val writable = hasWritePermission(owner, name, context.loginAccount)
-      val loginUserName = context.loginAccount.get.userName
+      val manageable = isManageable(repository)
+      val editable = isEditable(repository)
 
-      val issueId = createIssue(
-        owner            = repository.owner,
-        repository       = repository.name,
-        loginUser        = loginUserName,
-        title            = form.title,
-        content          = form.content,
-        assignedUserName = if(writable) form.assignedUserName else None,
-        milestoneId      = if(writable) form.milestoneId else None,
-        isPullRequest    = true)
+      if(editable) {
+        val loginUserName = context.loginAccount.get.userName
 
-      createPullRequest(
-        originUserName        = repository.owner,
-        originRepositoryName  = repository.name,
-        issueId               = issueId,
-        originBranch          = form.targetBranch,
-        requestUserName       = form.requestUserName,
-        requestRepositoryName = form.requestRepositoryName,
-        requestBranch         = form.requestBranch,
-        commitIdFrom          = form.commitIdFrom,
-        commitIdTo            = form.commitIdTo)
+        val issueId = createIssue(
+          owner = repository.owner,
+          repository = repository.name,
+          loginUser = loginUserName,
+          title = form.title,
+          content = form.content,
+          assignedUserName = if (manageable) form.assignedUserName else None,
+          milestoneId = if (manageable) form.milestoneId else None,
+          isPullRequest = true)
 
-      // insert labels
-      if(writable){
-        form.labelNames.map { value =>
-          val labels = getLabels(owner, name)
-          value.split(",").foreach { labelName =>
-            labels.find(_.labelName == labelName).map { label =>
-              registerIssueLabel(repository.owner, repository.name, issueId, label.labelId)
+        createPullRequest(
+          originUserName = repository.owner,
+          originRepositoryName = repository.name,
+          issueId = issueId,
+          originBranch = form.targetBranch,
+          requestUserName = form.requestUserName,
+          requestRepositoryName = form.requestRepositoryName,
+          requestBranch = form.requestBranch,
+          commitIdFrom = form.commitIdFrom,
+          commitIdTo = form.commitIdTo)
+
+        // insert labels
+        if (manageable) {
+          form.labelNames.map { value =>
+            val labels = getLabels(owner, name)
+            value.split(",").foreach { labelName =>
+              labels.find(_.labelName == labelName).map { label =>
+                registerIssueLabel(repository.owner, repository.name, issueId, label.labelId)
+              }
             }
           }
         }
-      }
 
-      // fetch requested branch
-      fetchAsPullRequest(owner, name, form.requestUserName, form.requestRepositoryName, form.requestBranch, issueId)
+        // fetch requested branch
+        fetchAsPullRequest(owner, name, form.requestUserName, form.requestRepositoryName, form.requestBranch, issueId)
 
-      // record activity
-      recordPullRequestActivity(owner, name, loginUserName, issueId, form.title)
+        // record activity
+        recordPullRequestActivity(owner, name, loginUserName, issueId, form.title)
 
-      // call web hook
-      callPullRequestWebHook("opened", repository, issueId, context.baseUrl, context.loginAccount.get)
+        // call web hook
+        callPullRequestWebHook("opened", repository, issueId, context.baseUrl, context.loginAccount.get)
 
-      getIssue(owner, name, issueId.toString) foreach { issue =>
-        // extract references and create refer comment
-        createReferComment(owner, name, issue, form.title + " " + form.content.getOrElse(""), context.loginAccount.get)
+        getIssue(owner, name, issueId.toString) foreach { issue =>
+          // extract references and create refer comment
+          createReferComment(owner, name, issue, form.title + " " + form.content.getOrElse(""), context.loginAccount.get)
 
-        // notifications
-        Notifier().toNotify(repository, issue, form.content.getOrElse("")){
-          Notifier.msgPullRequest(s"${context.baseUrl}/${owner}/${name}/pull/${issueId}")
+          // notifications
+          Notifier().toNotify(repository, issue, form.content.getOrElse("")) {
+            Notifier.msgPullRequest(s"${context.baseUrl}/${owner}/${name}/pull/${issueId}")
+          }
         }
-      }
 
-      redirect(s"/${owner}/${name}/pull/${issueId}")
+        redirect(s"/${owner}/${name}/pull/${issueId}")
+      } else Unauthorized()
     }
   })
 
@@ -489,53 +495,45 @@ trait PullRequestsControllerBase extends ControllerBase {
       (defaultOwner, value)
     }
 
-  private def getRequestCompareInfo(userName: String, repositoryName: String, branch: String,
-      requestUserName: String, requestRepositoryName: String, requestCommitId: String): (Seq[Seq[CommitInfo]], Seq[DiffInfo]) =
-    using(
-      Git.open(getRepositoryDir(userName, repositoryName)),
-      Git.open(getRepositoryDir(requestUserName, requestRepositoryName))
-    ){ (oldGit, newGit) =>
-      val oldId = oldGit.getRepository.resolve(branch)
-      val newId = newGit.getRepository.resolve(requestCommitId)
-
-      val commits = newGit.log.addRange(oldId, newId).call.iterator.asScala.map { revCommit =>
-        new CommitInfo(revCommit)
-      }.toList.splitWith { (commit1, commit2) =>
-        helpers.date(commit1.commitTime) == view.helpers.date(commit2.commitTime)
-      }
-
-      val diffs = JGitUtil.getDiffs(newGit, oldId.getName, newId.getName, true)
-
-      (commits, diffs)
-    }
-
   private def searchPullRequests(userName: Option[String], repository: RepositoryService.RepositoryInfo) =
     defining(repository.owner, repository.name){ case (owner, repoName) =>
-      val page       = IssueSearchCondition.page(request)
-      val sessionKey = Keys.Session.Pulls(owner, repoName)
+      val page = IssueSearchCondition.page(request)
 
       // retrieve search condition
-      val condition = session.putAndGet(sessionKey,
-        if(request.hasQueryString) IssueSearchCondition(request)
-        else session.getAs[IssueSearchCondition](sessionKey).getOrElse(IssueSearchCondition())
-      )
+      val condition = IssueSearchCondition(request)
 
       gitbucket.core.issues.html.list(
         "pulls",
         searchIssue(condition, true, (page - 1) * PullRequestLimit, PullRequestLimit, owner -> repoName),
         page,
-        if(!getAccountByUserName(owner).exists(_.isGroupAccount)){
-          (getCollaborators(owner, repoName) :+ owner).sorted
-        } else {
-          getCollaborators(owner, repoName)
-        },
+        getAssignableUserNames(owner, repoName),
         getMilestones(owner, repoName),
         getLabels(owner, repoName),
         countIssue(condition.copy(state = "open"  ), true, owner -> repoName),
         countIssue(condition.copy(state = "closed"), true, owner -> repoName),
         condition,
         repository,
-        hasWritePermission(owner, repoName, context.loginAccount))
+        isEditable(repository),
+        isManageable(repository))
     }
 
+  /**
+   * Tests whether an logged-in user can manage pull requests.
+   */
+  private def isManageable(repository: RepositoryInfo)(implicit context: Context): Boolean = {
+    hasDeveloperRole(repository.owner, repository.name, context.loginAccount)
+  }
+
+  /**
+   * Tests whether an logged-in user can post pull requests.
+   */
+  private def isEditable(repository: RepositoryInfo)(implicit context: Context): Boolean = {
+    repository.repository.options.issuesOption match {
+      case "ALL"     => !repository.repository.isPrivate && context.loginAccount.isDefined
+      case "PUBLIC"  => hasGuestRole(repository.owner, repository.name, context.loginAccount)
+      case "PRIVATE" => hasDeveloperRole(repository.owner, repository.name, context.loginAccount)
+      case "DISABLE" => false
+    }
+  }
+
 }

src/main/scala/gitbucket/core/controller/RepositorySettingsController.scala

@@ -15,6 +15,7 @@ import org.scalatra.i18n.Messages
 import org.eclipse.jgit.api.Git
 import org.eclipse.jgit.lib.Constants
 import org.eclipse.jgit.lib.ObjectId
+import gitbucket.core.model.WebHookContentType
 
 
 class RepositorySettingsController extends RepositorySettingsControllerBase
@@ -26,12 +27,26 @@ trait RepositorySettingsControllerBase extends ControllerBase {
     with OwnerAuthenticator with UsersAuthenticator =>
 
   // for repository options
-  case class OptionsForm(repositoryName: String, description: Option[String], isPrivate: Boolean)
+  case class OptionsForm(
+    repositoryName: String,
+    description: Option[String],
+    isPrivate: Boolean,
+    issuesOption: String,
+    externalIssuesUrl: Option[String],
+    wikiOption: String,
+    externalWikiUrl: Option[String],
+    allowFork: Boolean
+  )
   
   val optionsForm = mapping(
-    "repositoryName" -> trim(label("Repository Name", text(required, maxlength(40), identifier, renameRepositoryName))),
-    "description"    -> trim(label("Description"    , optional(text()))),
-    "isPrivate"      -> trim(label("Repository Type", boolean()))
+    "repositoryName"    -> trim(label("Repository Name"    , text(required, maxlength(100), identifier, renameRepositoryName))),
+    "description"       -> trim(label("Description"        , optional(text()))),
+    "isPrivate"         -> trim(label("Repository Type"    , boolean())),
+    "issuesOption"      -> trim(label("Issues Option"      , text(required, featureOption))),
+    "externalIssuesUrl" -> trim(label("External Issues URL", optional(text(maxlength(200))))),
+    "wikiOption"        -> trim(label("Wiki Option"        , text(required, featureOption))),
+    "externalWikiUrl"   -> trim(label("External Wiki URL"  , optional(text(maxlength(200))))),
+    "allowFork"         -> trim(label("Allow Forking"      , boolean()))
   )(OptionsForm.apply)
 
   // for default branch
@@ -41,21 +56,24 @@ trait RepositorySettingsControllerBase extends ControllerBase {
     "defaultBranch"  -> trim(label("Default Branch" , text(required, maxlength(100))))
   )(DefaultBranchForm.apply)
 
-  // for collaborator addition
-  case class CollaboratorForm(userName: String)
-
-  val collaboratorForm = mapping(
-    "userName" -> trim(label("Username", text(required, collaborator)))
-  )(CollaboratorForm.apply)
+//  // for collaborator addition
+//  case class CollaboratorForm(userName: String)
+//
+//  val collaboratorForm = mapping(
+//    "userName" -> trim(label("Username", text(required, collaborator)))
+//  )(CollaboratorForm.apply)
 
   // for web hook url addition
-  case class WebHookForm(url: String, events: Set[WebHook.Event], token: Option[String])
+  case class WebHookForm(url: String, events: Set[WebHook.Event], ctype: WebHookContentType, token: Option[String])
 
   def webHookForm(update:Boolean) = mapping(
     "url"    -> trim(label("url", text(required, webHook(update)))),
     "events" -> webhookEvents,
+    "ctype" -> label("ctype", text()),
     "token" -> optional(trim(label("token", text(maxlength(100)))))
-  )(WebHookForm.apply)
+  )(
+    (url, events, ctype, token) => WebHookForm(url, events, WebHookContentType.valueOf(ctype), token)
+  )
 
   // for transfer ownership
   case class TransferOwnerShipForm(newOwner: String)
@@ -88,7 +106,12 @@ trait RepositorySettingsControllerBase extends ControllerBase {
       form.description,
       repository.repository.parentUserName.map { _ =>
         repository.repository.isPrivate
-      } getOrElse form.isPrivate
+      } getOrElse form.isPrivate,
+      form.issuesOption,
+      form.externalIssuesUrl,
+      form.wikiOption,
+      form.externalWikiUrl,
+      form.allowFork
     )
     // Change repository name
     if(repository.name != form.repositoryName){
@@ -152,22 +175,12 @@ trait RepositorySettingsControllerBase extends ControllerBase {
       repository)
   })
 
-  /**
-   * Add the collaborator.
-   */
-  post("/:owner/:repository/settings/collaborators/add", collaboratorForm)(ownerOnly { (form, repository) =>
-    if(!getAccountByUserName(repository.owner).get.isGroupAccount){
-      addCollaborator(repository.owner, repository.name, form.userName)
-    }
-    redirect(s"/${repository.owner}/${repository.name}/settings/collaborators")
-  })
-
-  /**
-   * Add the collaborator.
-   */
-  get("/:owner/:repository/settings/collaborators/remove")(ownerOnly { repository =>
-    if(!getAccountByUserName(repository.owner).get.isGroupAccount){
-      removeCollaborator(repository.owner, repository.name, params("name"))
+  post("/:owner/:repository/settings/collaborators")(ownerOnly { repository =>
+    val collaborators = params("collaborators")
+    removeCollaborators(repository.owner, repository.name)
+    collaborators.split(",").withFilter(_.nonEmpty).map { collaborator =>
+      val userName :: role :: Nil = collaborator.split(":").toList
+      addCollaborator(repository.owner, repository.name, userName, role)
     }
     redirect(s"/${repository.owner}/${repository.name}/settings/collaborators")
   })
@@ -183,7 +196,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
    * Display the web hook edit page.
    */
   get("/:owner/:repository/settings/hooks/new")(ownerOnly { repository =>
-    val webhook = WebHook(repository.owner, repository.name, "", None)
+    val webhook = WebHook(repository.owner, repository.name, "", WebHookContentType.FORM, None)
     html.edithooks(webhook, Set(WebHook.Push), repository, flash.get("info"), true)
   })
 
@@ -191,7 +204,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
    * Add the web hook URL.
    */
   post("/:owner/:repository/settings/hooks/new", webHookForm(false))(ownerOnly { (form, repository) =>
-    addWebHook(repository.owner, repository.name, form.url, form.events, form.token)
+    addWebHook(repository.owner, repository.name, form.url, form.events, form.ctype, form.token)
     flash += "info" -> s"Webhook ${form.url} created"
     redirect(s"/${repository.owner}/${repository.name}/settings/hooks")
   })
@@ -221,10 +234,11 @@ trait RepositorySettingsControllerBase extends ControllerBase {
 
       val url = params("url")
       val token = Some(params("token"))
-      val dummyWebHookInfo = WebHook(repository.owner, repository.name, url, token)
+      val ctype = WebHookContentType.valueOf(params("ctype"))
+      val dummyWebHookInfo = WebHook(repository.owner, repository.name, url, ctype, token)
       val dummyPayload = {
         val ownerAccount = getAccountByUserName(repository.owner).get
-        val commits = if(repository.commitCount == 0) List.empty else git.log
+        val commits = if(JGitUtil.isEmpty(git)) List.empty else git.log
           .add(git.getRepository.resolve(repository.repository.defaultBranch))
           .setMaxCount(4)
           .call.iterator.asScala.map(new CommitInfo(_)).toList
@@ -273,14 +287,14 @@ trait RepositorySettingsControllerBase extends ControllerBase {
   get("/:owner/:repository/settings/hooks/edit")(ownerOnly { repository =>
     getWebHook(repository.owner, repository.name, params("url")).map{ case (webhook, events) =>
       html.edithooks(webhook, events, repository, flash.get("info"), false)
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
   /**
    * Update web hook settings.
    */
   post("/:owner/:repository/settings/hooks/edit", webHookForm(true))(ownerOnly { (form, repository) =>
-    updateWebHook(repository.owner, repository.name, form.url, form.events, form.token)
+    updateWebHook(repository.owner, repository.name, form.url, form.events, form.ctype, form.token)
     flash += "info" -> s"webhook ${form.url} updated"
     redirect(s"/${repository.owner}/${repository.name}/settings/hooks")
   })
@@ -289,7 +303,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
    * Display the danger zone.
    */
   get("/:owner/:repository/settings/danger")(ownerOnly {
-    html.danger(_)
+    html.danger(_, flash.get("info"))
   })
 
   /**
@@ -328,6 +342,19 @@ trait RepositorySettingsControllerBase extends ControllerBase {
     redirect(s"/${repository.owner}")
   })
 
+  /**
+   * Run GC
+   */
+  post("/:owner/:repository/settings/gc")(ownerOnly { repository =>
+    LockUtil.lock(s"${repository.owner}/${repository.name}") {
+      using(Git.open(getRepositoryDir(repository.owner, repository.name))) { git =>
+        git.gc();
+      }
+    }
+    flash += "info" -> "Garbage collection has been executed."
+    redirect(s"/${repository.owner}/${repository.name}/settings/danger")
+  })
+
   /**
    * Provides duplication check for web hook url.
    */
@@ -357,20 +384,20 @@ trait RepositorySettingsControllerBase extends ControllerBase {
     }
   }
 
-  /**
-   * Provides Constraint to validate the collaborator name.
-   */
-  private def collaborator: Constraint = new Constraint(){
-    override def validate(name: String, value: String, messages: Messages): Option[String] =
-      getAccountByUserName(value) match {
-        case None => Some("User does not exist.")
-        case Some(x) if(x.isGroupAccount)
-                  => Some("User does not exist.")
-        case Some(x) if(x.userName == params("owner") || getCollaborators(params("owner"), params("repository")).contains(x.userName))
-                  => Some("User can access this repository already.")
-        case _    => None
-      }
-  }
+//  /**
+//   * Provides Constraint to validate the collaborator name.
+//   */
+//  private def collaborator: Constraint = new Constraint(){
+//    override def validate(name: String, value: String, messages: Messages): Option[String] =
+//      getAccountByUserName(value) match {
+//        case None => Some("User does not exist.")
+////        case Some(x) if(x.isGroupAccount)
+////                  => Some("User does not exist.")
+//        case Some(x) if(x.userName == params("owner") || getCollaborators(params("owner"), params("repository")).contains(x.userName))
+//                  => Some(value + " is repository owner.") // TODO also group members?
+//        case _    => None
+//      }
+//  }
 
   /**
    * Duplicate check for the rename repository name.
@@ -384,6 +411,15 @@ trait RepositorySettingsControllerBase extends ControllerBase {
       }
   }
 
+  /**
+   *
+   */
+  private def featureOption: Constraint = new Constraint(){
+    override def validate(name: String, value: String, params: Map[String, String], messages: Messages): Option[String] =
+      if(Seq("DISABLE", "PRIVATE", "PUBLIC", "ALL").contains(value)) None else Some("Option is invalid.")
+  }
+
+
   /**
    * Provides Constraint to validate the repository transfer user.
    */

src/main/scala/gitbucket/core/controller/RepositoryViewerController.scala

@@ -31,7 +31,7 @@ import org.scalatra._
 
 class RepositoryViewerController extends RepositoryViewerControllerBase
   with RepositoryService with AccountService with ActivityService with IssuesService with WebHookService with CommitsService
-  with ReadableUsersAuthenticator with ReferrerAuthenticator with CollaboratorsAuthenticator with PullRequestService with CommitStatusService
+  with ReadableUsersAuthenticator with ReferrerAuthenticator with WritableUsersAuthenticator with PullRequestService with CommitStatusService
   with WebHookPullRequestService with WebHookPullRequestReviewCommentService with ProtectedBranchService
 
 /**
@@ -39,7 +39,7 @@ class RepositoryViewerController extends RepositoryViewerControllerBase
  */
 trait RepositoryViewerControllerBase extends ControllerBase {
   self: RepositoryService with AccountService with ActivityService with IssuesService with WebHookService with CommitsService
-    with ReadableUsersAuthenticator with ReferrerAuthenticator with CollaboratorsAuthenticator with PullRequestService with CommitStatusService
+    with ReadableUsersAuthenticator with ReferrerAuthenticator with WritableUsersAuthenticator with PullRequestService with CommitStatusService
     with WebHookPullRequestService with WebHookPullRequestReviewCommentService with ProtectedBranchService =>
 
   ArchiveCommand.registerFormat("zip", new ZipFormat)
@@ -110,22 +110,27 @@ trait RepositoryViewerControllerBase extends ControllerBase {
       enableLineBreaks = params("enableLineBreaks").toBoolean,
       enableTaskList = params("enableTaskList").toBoolean,
       enableAnchor = false,
-      hasWritePermission = hasWritePermission(repository.owner, repository.name, context.loginAccount)
+      hasWritePermission = hasDeveloperRole(repository.owner, repository.name, context.loginAccount)
     )
   })
 
   /**
    * Displays the file list of the repository root and the default branch.
    */
-  get("/:owner/:repository")(referrersOnly {
-    fileList(_)
-  })
+  get("/:owner/:repository") {
+    params.get("go-get") match {
+      case Some("1") => defining(request.paths){ paths =>
+        getRepository(paths(0), paths(1)).map(gitbucket.core.html.goget(_))getOrElse NotFound()
+      }
+      case _ => referrersOnly(fileList(_))
+    }
+  }
 
   /**
    * Displays the file list of the specified path and branch.
    */
   get("/:owner/:repository/tree/*")(referrersOnly { repository =>
-    val (id, path) = splitPath(repository, multiParams("splat").head)
+    val (id, path) = repository.splitPath(multiParams("splat").head)
     if(path.isEmpty){
       fileList(repository, id)
     } else {
@@ -137,7 +142,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
    * Displays the commit list of the specified resource.
    */
   get("/:owner/:repository/commits/*")(referrersOnly { repository =>
-    val (branchName, path) = splitPath(repository, multiParams("splat").head)
+    val (branchName, path) = repository.splitPath(multiParams("splat").head)
     val page = params.get("page").flatMap(_.toIntOpt).getOrElse(1)
 
     using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
@@ -146,22 +151,22 @@ trait RepositoryViewerControllerBase extends ControllerBase {
           html.commits(if(path.isEmpty) Nil else path.split("/").toList, branchName, repository,
             logs.splitWith{ (commit1, commit2) =>
               view.helpers.date(commit1.commitTime) == view.helpers.date(commit2.commitTime)
-            }, page, hasNext, hasWritePermission(repository.owner, repository.name, context.loginAccount))
-        case Left(_) => NotFound
+            }, page, hasNext, hasDeveloperRole(repository.owner, repository.name, context.loginAccount))
+        case Left(_) => NotFound()
       }
     }
   })
 
-  get("/:owner/:repository/new/*")(collaboratorsOnly { repository =>
-    val (branch, path) = splitPath(repository, multiParams("splat").head)
+  get("/:owner/:repository/new/*")(writableUsersOnly { repository =>
+    val (branch, path) = repository.splitPath(multiParams("splat").head)
     val protectedBranch = getProtectedBranchInfo(repository.owner, repository.name, branch).needStatusCheck(context.loginAccount.get.userName)
     html.editor(branch, repository, if(path.length == 0) Nil else path.split("/").toList,
       None, JGitUtil.ContentInfo("text", None, Some("UTF-8")),
       protectedBranch)
   })
 
-  get("/:owner/:repository/edit/*")(collaboratorsOnly { repository =>
-    val (branch, path) = splitPath(repository, multiParams("splat").head)
+  get("/:owner/:repository/edit/*")(writableUsersOnly { repository =>
+    val (branch, path) = repository.splitPath(multiParams("splat").head)
     val protectedBranch = getProtectedBranchInfo(repository.owner, repository.name, branch).needStatusCheck(context.loginAccount.get.userName)
 
     using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
@@ -172,12 +177,12 @@ trait RepositoryViewerControllerBase extends ControllerBase {
         html.editor(branch, repository, paths.take(paths.size - 1).toList, Some(paths.last),
           JGitUtil.getContentInfo(git, path, objectId),
           protectedBranch)
-      } getOrElse NotFound
+      } getOrElse NotFound()
     }
   })
 
-  get("/:owner/:repository/remove/*")(collaboratorsOnly { repository =>
-    val (branch, path) = splitPath(repository, multiParams("splat").head)
+  get("/:owner/:repository/remove/*")(writableUsersOnly { repository =>
+    val (branch, path) = repository.splitPath(multiParams("splat").head)
     using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
       val revCommit = JGitUtil.getRevCommitFromId(git, git.getRepository.resolve(branch))
 
@@ -185,11 +190,11 @@ trait RepositoryViewerControllerBase extends ControllerBase {
         val paths = path.split("/")
         html.delete(branch, repository, paths.take(paths.size - 1).toList, paths.last,
           JGitUtil.getContentInfo(git, path, objectId))
-      } getOrElse NotFound
+      } getOrElse NotFound()
     }
   })
 
-  post("/:owner/:repository/create", editorForm)(collaboratorsOnly { (form, repository) =>
+  post("/:owner/:repository/create", editorForm)(writableUsersOnly { (form, repository) =>
     commitFile(
       repository  = repository,
       branch      = form.branch,
@@ -206,7 +211,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     }")
   })
 
-  post("/:owner/:repository/update", editorForm)(collaboratorsOnly { (form, repository) =>
+  post("/:owner/:repository/update", editorForm)(writableUsersOnly { (form, repository) =>
     commitFile(
       repository  = repository,
       branch      = form.branch,
@@ -227,7 +232,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     }")
   })
 
-  post("/:owner/:repository/remove", deleteForm)(collaboratorsOnly { (form, repository) =>
+  post("/:owner/:repository/remove", deleteForm)(writableUsersOnly { (form, repository) =>
     commitFile(repository, form.branch, form.path, None, Some(form.fileName), "", "",
       form.message.getOrElse(s"Delete ${form.fileName}"))
 
@@ -235,7 +240,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
   })
 
   get("/:owner/:repository/raw/*")(referrersOnly { repository =>
-    val (id, path) = splitPath(repository, multiParams("splat").head)
+    val (id, path) = repository.splitPath(multiParams("splat").head)
     using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
       val revCommit = JGitUtil.getRevCommitFromId(git, git.getRepository.resolve(id))
       getPathObjectId(git, path, revCommit).flatMap { objectId =>
@@ -245,7 +250,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
           loader.copyTo(response.outputStream)
           ()
         }
-      } getOrElse NotFound
+      } getOrElse NotFound()
     }
   })
 
@@ -253,7 +258,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
    * Displays the file content of the specified branch or commit.
    */
   val blobRoute = get("/:owner/:repository/blob/*")(referrersOnly { repository =>
-    val (id, path) = splitPath(repository, multiParams("splat").head)
+    val (id, path) = repository.splitPath(multiParams("splat").head)
     val raw = params.get("raw").getOrElse("false").toBoolean
     using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
       val revCommit = JGitUtil.getRevCommitFromId(git, git.getRepository.resolve(id))
@@ -265,15 +270,15 @@ trait RepositoryViewerControllerBase extends ControllerBase {
             response.setContentLength(loader.getSize.toInt)
             loader.copyTo(response.outputStream)
             ()
-          } getOrElse NotFound
+          } getOrElse NotFound()
         } else {
           html.blob(id, repository, path.split("/").toList,
             JGitUtil.getContentInfo(git, path, objectId),
             new JGitUtil.CommitInfo(JGitUtil.getLastModifiedCommit(git, revCommit, path)),
-            hasWritePermission(repository.owner, repository.name, context.loginAccount),
+            hasDeveloperRole(repository.owner, repository.name, context.loginAccount),
             request.paths(2) == "blame")
         }
-      } getOrElse NotFound
+      } getOrElse NotFound()
     }
   })
 
@@ -285,7 +290,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
    * Blame data.
    */
   ajaxGet("/:owner/:repository/get-blame/*")(referrersOnly { repository =>
-    val (id, path) = splitPath(repository, multiParams("splat").head)
+    val (id, path) = repository.splitPath(multiParams("splat").head)
     contentType = formats("json")
     using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
       val last = git.log.add(git.getRepository.resolve(id)).addPath(path).setMaxCount(1).call.iterator.next.name
@@ -323,13 +328,13 @@ trait RepositoryViewerControllerBase extends ControllerBase {
               html.commit(id, new JGitUtil.CommitInfo(revCommit),
                 JGitUtil.getBranchesOfCommit(git, revCommit.getName),
                 JGitUtil.getTagsOfCommit(git, revCommit.getName),
-                getCommitComments(repository.owner, repository.name, id, false),
-                repository, diffs, oldCommitId, hasWritePermission(repository.owner, repository.name, context.loginAccount))
+                getCommitComments(repository.owner, repository.name, id, true),
+                repository, diffs, oldCommitId, hasDeveloperRole(repository.owner, repository.name, context.loginAccount))
           }
         }
       }
     } catch {
-      case e:MissingObjectException => NotFound
+      case e:MissingObjectException => NotFound()
     }
   })
 
@@ -353,7 +358,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     html.commentform(
       commitId = id,
       fileName, oldLineNumber, newLineNumber, issueId,
-      hasWritePermission = hasWritePermission(repository.owner, repository.name, context.loginAccount),
+      hasWritePermission = hasDeveloperRole(repository.owner, repository.name, context.loginAccount),
       repository = repository
     )
   })
@@ -369,15 +374,14 @@ trait RepositoryViewerControllerBase extends ControllerBase {
         callPullRequestReviewCommentWebHook("create", comment, repository, issueId, context.baseUrl, context.loginAccount.get)
       case None => recordCommentCommitActivity(repository.owner, repository.name, context.loginAccount.get.userName, id, form.content)
     }
-    helper.html.commitcomment(comment, hasWritePermission(repository.owner, repository.name, context.loginAccount), repository)
+    helper.html.commitcomment(comment, hasDeveloperRole(repository.owner, repository.name, context.loginAccount), repository)
   })
 
   ajaxGet("/:owner/:repository/commit_comments/_data/:id")(readableUsersOnly { repository =>
     getCommitComment(repository.owner, repository.name, params("id")) map { x =>
       if(isEditable(x.userName, x.repositoryName, x.commentedUserName)){
         params.get("dataType") collect {
-          case t if t == "html" => html.editcomment(
-            x.content, x.commentId, x.userName, x.repositoryName)
+          case t if t == "html" => html.editcomment(x.content, x.commentId, repository)
         } getOrElse {
           contentType = formats("json")
           org.json4s.jackson.Serialization.write(
@@ -389,12 +393,12 @@ trait RepositoryViewerControllerBase extends ControllerBase {
                 enableRefsLink = true,
                 enableAnchor = true,
                 enableLineBreaks = true,
-                hasWritePermission = isEditable(x.userName, x.repositoryName, x.commentedUserName)
+                hasWritePermission = true
               )
             ))
         }
-      } else Unauthorized
-    } getOrElse NotFound
+      } else Unauthorized()
+    } getOrElse NotFound()
   })
 
   ajaxPost("/:owner/:repository/commit_comments/edit/:id", commentForm)(readableUsersOnly { (form, repository) =>
@@ -403,8 +407,8 @@ trait RepositoryViewerControllerBase extends ControllerBase {
         if(isEditable(owner, name, comment.commentedUserName)){
           updateCommitComment(comment.commentId, form.content)
           redirect(s"/${owner}/${name}/commit_comments/_data/${comment.commentId}")
-        } else Unauthorized
-      } getOrElse NotFound
+        } else Unauthorized()
+      } getOrElse NotFound()
     }
   })
 
@@ -413,8 +417,8 @@ trait RepositoryViewerControllerBase extends ControllerBase {
       getCommitComment(owner, name, params("id")).map { comment =>
         if(isEditable(owner, name, comment.commentedUserName)){
           Ok(deleteCommitComment(comment.commentId))
-        } else Unauthorized
-      } getOrElse NotFound
+        } else Unauthorized()
+      } getOrElse NotFound()
     }
   })
 
@@ -433,13 +437,13 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     .map(br => (br, getPullRequestByRequestCommit(repository.owner, repository.name, repository.repository.defaultBranch, br.name, br.commitId), protectedBranches.contains(br.name)))
     .reverse
 
-    html.branches(branches, hasWritePermission(repository.owner, repository.name, context.loginAccount), repository)
+    html.branches(branches, hasDeveloperRole(repository.owner, repository.name, context.loginAccount), repository)
   })
 
   /**
    * Creates a branch.
    */
-  post("/:owner/:repository/branches")(collaboratorsOnly { repository =>
+  post("/:owner/:repository/branches")(writableUsersOnly { repository =>
     val newBranchName = params.getOrElse("new", halt(400))
     val fromBranchName = params.getOrElse("from", halt(400))
     using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
@@ -457,7 +461,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
   /**
    * Deletes branch.
    */
-  get("/:owner/:repository/delete/*")(collaboratorsOnly { repository =>
+  get("/:owner/:repository/delete/*")(writableUsersOnly { repository =>
     val branchName = multiParams("splat").head
     val userName   = context.loginAccount.get.userName
     if(repository.repository.defaultBranch != branchName){
@@ -485,19 +489,25 @@ trait RepositoryViewerControllerBase extends ControllerBase {
         archiveRepository(name, ".zip", repository)
       case name if name.endsWith(".tar.gz") =>
         archiveRepository(name, ".tar.gz", repository)
-      case _ => BadRequest
+      case _ => BadRequest()
     }
   })
 
   get("/:owner/:repository/network/members")(referrersOnly { repository =>
-    html.forked(
-      getRepository(
-        repository.repository.originUserName.getOrElse(repository.owner),
-        repository.repository.originRepositoryName.getOrElse(repository.name)),
-      getForkedRepositories(
-        repository.repository.originUserName.getOrElse(repository.owner),
-        repository.repository.originRepositoryName.getOrElse(repository.name)),
-      repository)
+    if(repository.repository.options.allowFork) {
+      html.forked(
+        getRepository(
+          repository.repository.originUserName.getOrElse(repository.owner),
+          repository.repository.originRepositoryName.getOrElse(repository.name)),
+        getForkedRepositories(
+          repository.repository.originUserName.getOrElse(repository.owner),
+          repository.repository.originRepositoryName.getOrElse(repository.name)),
+        context.loginAccount match {
+          case None => List()
+          case account: Option[Account] => getGroupsByUserName(account.get.userName)
+        }, // groups of current user
+        repository)
+    } else BadRequest()
   })
 
   /**
@@ -507,14 +517,8 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
       val ref = multiParams("splat").head
       JGitUtil.getTreeId(git, ref).map{ treeId =>
-        html.find(ref,
-                  treeId,
-                  repository,
-                  context.loginAccount match {
-                    case None => List()
-                    case account: Option[Account] => getGroupsByUserName(account.get.userName)
-                  })
-      } getOrElse NotFound
+        html.find(ref, treeId, repository)
+      } getOrElse NotFound()
     }
   })
 
@@ -529,17 +533,6 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     }
   })
 
-  private def splitPath(repository: RepositoryService.RepositoryInfo, path: String): (String, String) = {
-    val id = repository.branchList.collectFirst {
-      case branch if(path == branch || path.startsWith(branch + "/")) => branch
-    } orElse repository.tags.collectFirst {
-      case tag if(path == tag.name || path.startsWith(tag.name + "/")) => tag.name
-    } getOrElse path.split("/")(0)
-
-    (id, path.substring(id.length).stripPrefix("/"))
-  }
-
-
   private val readmeFiles = PluginRegistry().renderableExtensions.map { extension =>
     s"readme.${extension}"
   } ++ Seq("readme.txt", "readme")
@@ -553,10 +546,10 @@ trait RepositoryViewerControllerBase extends ControllerBase {
    * @return HTML of the file list
    */
   private def fileList(repository: RepositoryService.RepositoryInfo, revstr: String = "", path: String = ".") = {
-    if(repository.commitCount == 0){
-      html.guide(repository, hasWritePermission(repository.owner, repository.name, context.loginAccount))
-    } else {
-      using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
+    using(Git.open(getRepositoryDir(repository.owner, repository.name))){ git =>
+      if(JGitUtil.isEmpty(git)){
+        html.guide(repository, hasDeveloperRole(repository.owner, repository.name, context.loginAccount))
+      } else {
         // get specified commit
         JGitUtil.getDefaultBranch(git, repository, revstr).map { case (objectId, revision) =>
           defining(JGitUtil.getRevCommitFromId(git, objectId)) { revCommit =>
@@ -575,16 +568,17 @@ trait RepositoryViewerControllerBase extends ControllerBase {
 
             html.files(revision, repository,
               if(path == ".") Nil else path.split("/").toList, // current path
-              context.loginAccount match {
-                case None => List()
-                case account: Option[Account] => getGroupsByUserName(account.get.userName)
-              }, // groups of current user
               new JGitUtil.CommitInfo(lastModifiedCommit), // last modified commit
-              files, readme, hasWritePermission(repository.owner, repository.name, context.loginAccount),
+              JGitUtil.getCommitCount(repository.owner, repository.name, revision),
+              files,
+              readme,
+              hasDeveloperRole(repository.owner, repository.name, context.loginAccount),
               getPullRequestFromBranch(repository.owner, repository.name, revstr, repository.repository.defaultBranch),
-              flash.get("info"), flash.get("error"))
+              flash.get("info"),
+              flash.get("error")
+            )
           }
-        } getOrElse NotFound
+        } getOrElse NotFound()
       }
     }
   }
@@ -604,14 +598,18 @@ trait RepositoryViewerControllerBase extends ControllerBase {
         val headName = s"refs/heads/${branch}"
         val headTip  = git.getRepository.resolve(headName)
 
-        JGitUtil.processTree(git, headTip){ (path, tree) =>
+        val permission = JGitUtil.processTree(git, headTip){ (path, tree) =>
+          // Add all entries except the editing file
           if(!newPath.exists(_ == path) && !oldPath.exists(_ == path)){
             builder.add(JGitUtil.createDirCacheEntry(path, tree.getEntryFileMode, tree.getEntryObjectId))
           }
-        }
+          // Retrieve permission if file exists to keep it
+          oldPath.collect { case x if x == path => tree.getEntryFileMode.getBits }
+        }.flatten.headOption
 
         newPath.foreach { newPath =>
-          builder.add(JGitUtil.createDirCacheEntry(newPath, FileMode.REGULAR_FILE,
+          builder.add(JGitUtil.createDirCacheEntry(newPath,
+            permission.map { bits => FileMode.fromBits(bits) } getOrElse FileMode.REGULAR_FILE,
             inserter.insert(Constants.OBJ_BLOB, content.getBytes(charset))))
         }
         builder.finish()
@@ -634,8 +632,11 @@ trait RepositoryViewerControllerBase extends ControllerBase {
         updatePullRequests(repository.owner, repository.name, branch)
 
         // record activity
-        recordPushActivity(repository.owner, repository.name, loginAccount.userName, branch,
-          List(new CommitInfo(JGitUtil.getRevCommitFromId(git, commitId))))
+        val commitInfo = new CommitInfo(JGitUtil.getRevCommitFromId(git, commitId))
+        recordPushActivity(repository.owner, repository.name, loginAccount.userName, branch, List(commitInfo))
+
+        // create issue comment by commit message
+        createIssueComment(repository.owner, repository.name, commitInfo)
 
         // close issue by commit message
         closeIssuesFromMessage(message, loginAccount.userName, repository.owner, repository.name)
@@ -695,9 +696,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
   }
 
   private def isEditable(owner: String, repository: String, author: String)(implicit context: Context): Boolean =
-    hasWritePermission(owner, repository, context.loginAccount) || author == context.loginAccount.get.userName
-
-
+    hasDeveloperRole(owner, repository, context.loginAccount) || author == context.loginAccount.get.userName
 
   override protected def renderUncaughtException(e: Throwable)(implicit request: HttpServletRequest, response: HttpServletResponse): Unit = {
     e.printStackTrace()

src/main/scala/gitbucket/core/controller/SystemSettingsController.scala

@@ -1,8 +1,10 @@
 package gitbucket.core.controller
 
+import java.io.FileInputStream
+
 import gitbucket.core.admin.html
-import gitbucket.core.service.{AccountService, SystemSettingsService, RepositoryService}
-import gitbucket.core.util.AdminAuthenticator
+import gitbucket.core.service.{AccountService, RepositoryService, SystemSettingsService}
+import gitbucket.core.util.{AdminAuthenticator, Mailer}
 import gitbucket.core.ssh.SshServer
 import gitbucket.core.plugin.PluginRegistry
 import SystemSettingsService._
@@ -11,7 +13,7 @@ import gitbucket.core.util.ControlUtil._
 import gitbucket.core.util.Directory._
 import gitbucket.core.util.StringUtil._
 import io.github.gitbucket.scalatra.forms._
-import org.apache.commons.io.FileUtils
+import org.apache.commons.io.{FileUtils, IOUtils}
 import org.scalatra.i18n.Messages
 
 class SystemSettingsController extends SystemSettingsControllerBase
@@ -68,12 +70,22 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
     ).flatten
   }
 
-  private val pluginForm = mapping(
-    "pluginId" -> list(trim(label("", text())))
-  )(PluginForm.apply)
+  private val sendMailForm = mapping(
+    "smtp"        -> mapping(
+      "host"        -> trim(label("SMTP Host", text(required))),
+      "port"        -> trim(label("SMTP Port", optional(number()))),
+      "user"        -> trim(label("SMTP User", optional(text()))),
+      "password"    -> trim(label("SMTP Password", optional(text()))),
+      "ssl"         -> trim(label("Enable SSL", optional(boolean()))),
+      "fromAddress" -> trim(label("FROM Address", optional(text()))),
+      "fromName"    -> trim(label("FROM Name", optional(text())))
+    )(Smtp.apply),
+    "testAddress" -> trim(label("", text(required)))
+  )(SendMailForm.apply)
 
-  case class PluginForm(pluginIds: List[String])
+  case class SendMailForm(smtp: Smtp, testAddress: String)
 
+  case class DataExportForm(tableNames: List[String])
 
   case class NewUserForm(userName: String, password: String, fullName: String,
                          mailAddress: String, isAdmin: Boolean,
@@ -91,7 +103,7 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
 
 
   val newUserForm = mapping(
-    "userName"    -> trim(label("Username"     ,text(required, maxlength(100), identifier, uniqueUserName))),
+    "userName"    -> trim(label("Username"     ,text(required, maxlength(100), identifier, uniqueUserName, reservedNames))),
     "password"    -> trim(label("Password"     ,text(required, maxlength(20)))),
     "fullName"    -> trim(label("Full Name"    ,text(required, maxlength(100)))),
     "mailAddress" -> trim(label("Mail Address" ,text(required, maxlength(100), uniqueMailAddress()))),
@@ -113,7 +125,7 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
   )(EditUserForm.apply)
 
   val newGroupForm = mapping(
-    "groupName" -> trim(label("Group name" ,text(required, maxlength(100), identifier, uniqueUserName))),
+    "groupName" -> trim(label("Group name" ,text(required, maxlength(100), identifier, uniqueUserName, reservedNames))),
     "url"       -> trim(label("URL"        ,optional(text(maxlength(200))))),
     "fileId"    -> trim(label("File ID"    ,optional(text()))),
     "members"   -> trim(label("Members"    ,text(required, members)))
@@ -149,6 +161,18 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
     redirect("/admin/system")
   })
 
+  post("/admin/system/sendmail", sendMailForm)(adminOnly { form =>
+    try {
+      new Mailer(form.smtp).send(form.testAddress,
+        "Test message from GitBucket", "This is a test message from GitBucket.")
+
+      "Test mail has been sent to: " + form.testAddress
+
+    } catch {
+      case e: Exception => "[Error] " + e.toString
+    }
+  })
+
   get("/admin/plugins")(adminOnly {
     html.plugins(PluginRegistry().getPlugins())
   })
@@ -176,37 +200,40 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
 
   get("/admin/users/:userName/_edituser")(adminOnly {
     val userName = params("userName")
-    html.user(getAccountByUserName(userName, true))
+    html.user(getAccountByUserName(userName, true), flash.get("error"))
   })
 
   post("/admin/users/:name/_edituser", editUserForm)(adminOnly { form =>
     val userName = params("userName")
     getAccountByUserName(userName, true).map { account =>
+      if(account.isAdmin && (form.isRemoved || !form.isAdmin) && isLastAdministrator(account)){
+        flash += "error" -> "Account can't be turned off because this is last one administrator."
+        redirect(s"/admin/users/${userName}/_edituser")
+      } else {
+        if(form.isRemoved){
+          // Remove repositories
+          //        getRepositoryNamesOfUser(userName).foreach { repositoryName =>
+          //          deleteRepository(userName, repositoryName)
+          //          FileUtils.deleteDirectory(getRepositoryDir(userName, repositoryName))
+          //          FileUtils.deleteDirectory(getWikiRepositoryDir(userName, repositoryName))
+          //          FileUtils.deleteDirectory(getTemporaryDir(userName, repositoryName))
+          //        }
+          // Remove from GROUP_MEMBER, COLLABORATOR and REPOSITORY
+          removeUserRelatedData(userName)
+        }
 
-      if(form.isRemoved){
-        // Remove repositories
-        //        getRepositoryNamesOfUser(userName).foreach { repositoryName =>
-        //          deleteRepository(userName, repositoryName)
-        //          FileUtils.deleteDirectory(getRepositoryDir(userName, repositoryName))
-        //          FileUtils.deleteDirectory(getWikiRepositoryDir(userName, repositoryName))
-        //          FileUtils.deleteDirectory(getTemporaryDir(userName, repositoryName))
-        //        }
-        // Remove from GROUP_MEMBER, COLLABORATOR and REPOSITORY
-        removeUserRelatedData(userName)
+        updateAccount(account.copy(
+          password     = form.password.map(sha1).getOrElse(account.password),
+          fullName     = form.fullName,
+          mailAddress  = form.mailAddress,
+          isAdmin      = form.isAdmin,
+          url          = form.url,
+          isRemoved    = form.isRemoved))
+
+        updateImage(userName, form.fileId, form.clearImage)
+        redirect("/admin/users")
       }
-
-      updateAccount(account.copy(
-        password     = form.password.map(sha1).getOrElse(account.password),
-        fullName     = form.fullName,
-        mailAddress  = form.mailAddress,
-        isAdmin      = form.isAdmin,
-        url          = form.url,
-        isRemoved    = form.isRemoved))
-
-      updateImage(userName, form.fileId, form.clearImage)
-      redirect("/admin/users")
-
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
   get("/admin/users/_newgroup")(adminOnly {
@@ -252,22 +279,43 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
         } else {
           // Update GROUP_MEMBER
           updateGroupMembers(form.groupName, members)
-          // Update COLLABORATOR for group repositories
-          getRepositoryNamesOfUser(form.groupName).foreach { repositoryName =>
-            removeCollaborators(form.groupName, repositoryName)
-            members.foreach { case (userName, isManager) =>
-              addCollaborator(form.groupName, repositoryName, userName)
-            }
-          }
+//          // Update COLLABORATOR for group repositories
+//          getRepositoryNamesOfUser(form.groupName).foreach { repositoryName =>
+//            removeCollaborators(form.groupName, repositoryName)
+//            members.foreach { case (userName, isManager) =>
+//              addCollaborator(form.groupName, repositoryName, userName)
+//            }
+//          }
         }
 
         updateImage(form.groupName, form.fileId, form.clearImage)
         redirect("/admin/users")
 
-      } getOrElse NotFound
+      } getOrElse NotFound()
     }
   })
 
+  get("/admin/data")(adminOnly {
+    import gitbucket.core.util.JDBCUtil._
+    val session = request2Session(request)
+    html.data(session.conn.allTableNames())
+  })
+
+  post("/admin/export")(adminOnly {
+    import gitbucket.core.util.JDBCUtil._
+    val file = request2Session(request).conn.exportAsSQL(request.getParameterValues("tableNames").toSeq)
+
+    contentType = "application/octet-stream"
+    response.setHeader("Content-Disposition", "attachment; filename=" + file.getName)
+    response.setContentLength(file.length.toInt)
+
+    using(new FileInputStream(file)){ in =>
+      IOUtils.copy(in, response.outputStream)
+    }
+
+    ()
+  })
+
   private def members: Constraint = new Constraint(){
     override def validate(name: String, value: String, messages: Messages): Option[String] = {
       if(value.split(",").exists {

src/main/scala/gitbucket/core/controller/WikiController.scala

@@ -1,7 +1,8 @@
 package gitbucket.core.controller
 
+import gitbucket.core.service.RepositoryService.RepositoryInfo
 import gitbucket.core.wiki.html
-import gitbucket.core.service.{RepositoryService, WikiService, ActivityService, AccountService}
+import gitbucket.core.service.{AccountService, ActivityService, RepositoryService, WikiService}
 import gitbucket.core.util._
 import gitbucket.core.util.StringUtil._
 import gitbucket.core.util.ControlUtil._
@@ -12,10 +13,11 @@ import org.eclipse.jgit.api.Git
 import org.scalatra.i18n.Messages
 
 class WikiController extends WikiControllerBase 
-  with WikiService with RepositoryService with AccountService with ActivityService with CollaboratorsAuthenticator with ReferrerAuthenticator
+  with WikiService with RepositoryService with AccountService with ActivityService
+  with ReadableUsersAuthenticator with ReferrerAuthenticator
 
 trait WikiControllerBase extends ControllerBase {
-  self: WikiService with RepositoryService with ActivityService with CollaboratorsAuthenticator with ReferrerAuthenticator =>
+  self: WikiService with RepositoryService with ActivityService with ReadableUsersAuthenticator with ReferrerAuthenticator =>
 
   case class WikiPageEditForm(pageName: String, content: String, message: Option[String], currentPageName: String, id: String)
   
@@ -38,7 +40,7 @@ trait WikiControllerBase extends ControllerBase {
   get("/:owner/:repository/wiki")(referrersOnly { repository =>
     getWikiPage(repository.owner, repository.name, "Home").map { page =>
       html.page("Home", page, getWikiPageList(repository.owner, repository.name),
-        repository, hasWritePermission(repository.owner, repository.name, context.loginAccount),
+        repository, isEditable(repository),
         getWikiPage(repository.owner, repository.name, "_Sidebar"),
         getWikiPage(repository.owner, repository.name, "_Footer"))
     } getOrElse redirect(s"/${repository.owner}/${repository.name}/wiki/Home/_edit")
@@ -49,7 +51,7 @@ trait WikiControllerBase extends ControllerBase {
 
     getWikiPage(repository.owner, repository.name, pageName).map { page =>
       html.page(pageName, page, getWikiPageList(repository.owner, repository.name),
-        repository, hasWritePermission(repository.owner, repository.name, context.loginAccount),
+        repository, isEditable(repository),
         getWikiPage(repository.owner, repository.name, "_Sidebar"),
         getWikiPage(repository.owner, repository.name, "_Footer"))
     } getOrElse redirect(s"/${repository.owner}/${repository.name}/wiki/${StringUtil.urlEncode(pageName)}/_edit")
@@ -60,8 +62,8 @@ trait WikiControllerBase extends ControllerBase {
 
     using(Git.open(getWikiRepositoryDir(repository.owner, repository.name))){ git =>
       JGitUtil.getCommitLog(git, "master", path = pageName + ".md") match {
-        case Right((logs, hasNext)) => html.history(Some(pageName), logs, repository)
-        case Left(_) => NotFound
+        case Right((logs, hasNext)) => html.history(Some(pageName), logs, repository, isEditable(repository))
+        case Left(_) => NotFound()
       }
     }
   })
@@ -72,7 +74,7 @@ trait WikiControllerBase extends ControllerBase {
 
     using(Git.open(getWikiRepositoryDir(repository.owner, repository.name))){ git =>
       html.compare(Some(pageName), from, to, JGitUtil.getDiffs(git, from, to, true).filter(_.newPath == pageName + ".md"), repository,
-        hasWritePermission(repository.owner, repository.name, context.loginAccount), flash.get("info"))
+        isEditable(repository), flash.get("info"))
     }
   })
   
@@ -81,102 +83,115 @@ trait WikiControllerBase extends ControllerBase {
 
     using(Git.open(getWikiRepositoryDir(repository.owner, repository.name))){ git =>
       html.compare(None, from, to, JGitUtil.getDiffs(git, from, to, true), repository,
-        hasWritePermission(repository.owner, repository.name, context.loginAccount), flash.get("info"))
+        isEditable(repository), flash.get("info"))
     }
   })
 
-  get("/:owner/:repository/wiki/:page/_revert/:commitId")(collaboratorsOnly { repository =>
-    val pageName = StringUtil.urlDecode(params("page"))
-    val Array(from, to) = params("commitId").split("\\.\\.\\.")
+  get("/:owner/:repository/wiki/:page/_revert/:commitId")(readableUsersOnly { repository =>
+    if(isEditable(repository)){
+      val pageName = StringUtil.urlDecode(params("page"))
+      val Array(from, to) = params("commitId").split("\\.\\.\\.")
 
-    if(revertWikiPage(repository.owner, repository.name, from, to, context.loginAccount.get, Some(pageName))){
-      redirect(s"/${repository.owner}/${repository.name}/wiki/${StringUtil.urlEncode(pageName)}")
-    } else {
-      flash += "info" -> "This patch was not able to be reversed."
-      redirect(s"/${repository.owner}/${repository.name}/wiki/${StringUtil.urlEncode(pageName)}/_compare/${from}...${to}")
-    }
-  })
-
-  get("/:owner/:repository/wiki/_revert/:commitId")(collaboratorsOnly { repository =>
-    val Array(from, to) = params("commitId").split("\\.\\.\\.")
-
-    if(revertWikiPage(repository.owner, repository.name, from, to, context.loginAccount.get, None)){
-      redirect(s"/${repository.owner}/${repository.name}/wiki/")
-    } else {
-      flash += "info" -> "This patch was not able to be reversed."
-      redirect(s"/${repository.owner}/${repository.name}/wiki/_compare/${from}...${to}")
-    }
-  })
-
-  get("/:owner/:repository/wiki/:page/_edit")(collaboratorsOnly { repository =>
-    val pageName = StringUtil.urlDecode(params("page"))
-    html.edit(pageName, getWikiPage(repository.owner, repository.name, pageName), repository)
-  })
-  
-  post("/:owner/:repository/wiki/_edit", editForm)(collaboratorsOnly { (form, repository) =>
-    defining(context.loginAccount.get){ loginAccount =>
-      saveWikiPage(
-        repository.owner,
-        repository.name,
-        form.currentPageName,
-        form.pageName,
-        appendNewLine(convertLineSeparator(form.content, "LF"), "LF"),
-        loginAccount,
-        form.message.getOrElse(""),
-        Some(form.id)
-      ).map { commitId =>
-        updateLastActivityDate(repository.owner, repository.name)
-        recordEditWikiPageActivity(repository.owner, repository.name, loginAccount.userName, form.pageName, commitId)
-      }
-      if(notReservedPageName(form.pageName)) {
-        redirect(s"/${repository.owner}/${repository.name}/wiki/${StringUtil.urlEncode(form.pageName)}")
+      if(revertWikiPage(repository.owner, repository.name, from, to, context.loginAccount.get, Some(pageName))){
+        redirect(s"/${repository.owner}/${repository.name}/wiki/${StringUtil.urlEncode(pageName)}")
       } else {
-        redirect(s"/${repository.owner}/${repository.name}/wiki")
+        flash += "info" -> "This patch was not able to be reversed."
+        redirect(s"/${repository.owner}/${repository.name}/wiki/${StringUtil.urlEncode(pageName)}/_compare/${from}...${to}")
       }
-    }
+    } else Unauthorized()
+  })
+
+  get("/:owner/:repository/wiki/_revert/:commitId")(readableUsersOnly { repository =>
+    if(isEditable(repository)){
+      val Array(from, to) = params("commitId").split("\\.\\.\\.")
+
+      if(revertWikiPage(repository.owner, repository.name, from, to, context.loginAccount.get, None)){
+        redirect(s"/${repository.owner}/${repository.name}/wiki/")
+      } else {
+        flash += "info" -> "This patch was not able to be reversed."
+        redirect(s"/${repository.owner}/${repository.name}/wiki/_compare/${from}...${to}")
+      }
+    } else Unauthorized()
+  })
+
+  get("/:owner/:repository/wiki/:page/_edit")(readableUsersOnly { repository =>
+    if(isEditable(repository)){
+      val pageName = StringUtil.urlDecode(params("page"))
+      html.edit(pageName, getWikiPage(repository.owner, repository.name, pageName), repository)
+    } else Unauthorized()
   })
   
-  get("/:owner/:repository/wiki/_new")(collaboratorsOnly {
-    html.edit("", None, _)
+  post("/:owner/:repository/wiki/_edit", editForm)(readableUsersOnly { (form, repository) =>
+    if(isEditable(repository)){
+      defining(context.loginAccount.get){ loginAccount =>
+        saveWikiPage(
+          repository.owner,
+          repository.name,
+          form.currentPageName,
+          form.pageName,
+          appendNewLine(convertLineSeparator(form.content, "LF"), "LF"),
+          loginAccount,
+          form.message.getOrElse(""),
+          Some(form.id)
+        ).map { commitId =>
+          updateLastActivityDate(repository.owner, repository.name)
+          recordEditWikiPageActivity(repository.owner, repository.name, loginAccount.userName, form.pageName, commitId)
+        }
+        if(notReservedPageName(form.pageName)) {
+          redirect(s"/${repository.owner}/${repository.name}/wiki/${StringUtil.urlEncode(form.pageName)}")
+        } else {
+          redirect(s"/${repository.owner}/${repository.name}/wiki")
+        }
+      }
+    } else Unauthorized()
   })
   
-  post("/:owner/:repository/wiki/_new", newForm)(collaboratorsOnly { (form, repository) =>
-    defining(context.loginAccount.get){ loginAccount =>
-      saveWikiPage(repository.owner, repository.name, form.currentPageName, form.pageName,
+  get("/:owner/:repository/wiki/_new")(readableUsersOnly { repository =>
+    if(isEditable(repository)){
+      html.edit("", None, repository)
+    } else Unauthorized()
+  })
+  
+  post("/:owner/:repository/wiki/_new", newForm)(readableUsersOnly { (form, repository) =>
+    if(isEditable(repository)){
+      defining(context.loginAccount.get){ loginAccount =>
+        saveWikiPage(repository.owner, repository.name, form.currentPageName, form.pageName,
           form.content, loginAccount, form.message.getOrElse(""), None)
 
-      updateLastActivityDate(repository.owner, repository.name)
-      recordCreateWikiPageActivity(repository.owner, repository.name, loginAccount.userName, form.pageName)
+        updateLastActivityDate(repository.owner, repository.name)
+        recordCreateWikiPageActivity(repository.owner, repository.name, loginAccount.userName, form.pageName)
+
+        if(notReservedPageName(form.pageName)) {
+          redirect(s"/${repository.owner}/${repository.name}/wiki/${StringUtil.urlEncode(form.pageName)}")
+        } else {
+          redirect(s"/${repository.owner}/${repository.name}/wiki")
+        }
+      }
+    } else Unauthorized()
+  })
+  
+  get("/:owner/:repository/wiki/:page/_delete")(readableUsersOnly { repository =>
+    if(isEditable(repository)){
+      val pageName = StringUtil.urlDecode(params("page"))
+
+      defining(context.loginAccount.get){ loginAccount =>
+        deleteWikiPage(repository.owner, repository.name, pageName, loginAccount.fullName, loginAccount.mailAddress, s"Destroyed ${pageName}")
+        updateLastActivityDate(repository.owner, repository.name)
 
-      if(notReservedPageName(form.pageName)) {
-        redirect(s"/${repository.owner}/${repository.name}/wiki/${StringUtil.urlEncode(form.pageName)}")
-      } else {
         redirect(s"/${repository.owner}/${repository.name}/wiki")
       }
-    }
+    } else Unauthorized()
   })
-  
-  get("/:owner/:repository/wiki/:page/_delete")(collaboratorsOnly { repository =>
-    val pageName = StringUtil.urlDecode(params("page"))
 
-    defining(context.loginAccount.get){ loginAccount =>
-      deleteWikiPage(repository.owner, repository.name, pageName, loginAccount.fullName, loginAccount.mailAddress, s"Destroyed ${pageName}")
-      updateLastActivityDate(repository.owner, repository.name)
-
-      redirect(s"/${repository.owner}/${repository.name}/wiki")
-    }
-  })
-  
   get("/:owner/:repository/wiki/_pages")(referrersOnly { repository =>
-    html.pages(getWikiPageList(repository.owner, repository.name), repository,
-      hasWritePermission(repository.owner, repository.name, context.loginAccount))
+    html.pages(getWikiPageList(repository.owner, repository.name), repository, isEditable(repository))
   })
   
   get("/:owner/:repository/wiki/_history")(referrersOnly { repository =>
     using(Git.open(getWikiRepositoryDir(repository.owner, repository.name))){ git =>
       JGitUtil.getCommitLog(git, "master") match {
-        case Right((logs, hasNext)) => html.history(None, logs, repository)
-        case Left(_) => NotFound
+        case Right((logs, hasNext)) => html.history(None, logs, repository, isEditable(repository))
+        case Left(_) => NotFound()
       }
     }
   })
@@ -186,7 +201,7 @@ trait WikiControllerBase extends ControllerBase {
 
     getFileContent(repository.owner, repository.name, path).map { bytes =>
       RawData(FileUtil.getContentType(path, bytes), bytes)
-    } getOrElse NotFound
+    } getOrElse NotFound()
   })
 
   private def unique: Constraint = new Constraint(){
@@ -225,4 +240,13 @@ trait WikiControllerBase extends ControllerBase {
 
   private def targetWikiPage = getWikiPage(params("owner"), params("repository"), params("pageName"))
 
+  private def isEditable(repository: RepositoryInfo)(implicit context: Context): Boolean = {
+    repository.repository.options.wikiOption match {
+      case "ALL"     => !repository.repository.isPrivate && context.loginAccount.isDefined
+      case "PUBLIC"  => hasGuestRole(repository.owner, repository.name, context.loginAccount)
+      case "PRIVATE" => hasDeveloperRole(repository.owner, repository.name, context.loginAccount)
+      case "DISABLE" => false
+    }
+  }
+
 }

src/main/scala/gitbucket/core/model/Collaborator.scala

@@ -7,7 +7,8 @@ trait CollaboratorComponent extends TemplateComponent { self: Profile =>
 
   class Collaborators(tag: Tag) extends Table[Collaborator](tag, "COLLABORATOR") with BasicTemplate {
     val collaboratorName = column[String]("COLLABORATOR_NAME")
-    def * = (userName, repositoryName, collaboratorName) <> (Collaborator.tupled, Collaborator.unapply)
+    val role = column[String]("ROLE")
+    def * = (userName, repositoryName, collaboratorName, role) <> (Collaborator.tupled, Collaborator.unapply)
 
     def byPrimaryKey(owner: String, repository: String, collaborator: String) =
       byRepository(owner, repository) && (collaboratorName === collaborator.bind)
@@ -17,5 +18,23 @@ trait CollaboratorComponent extends TemplateComponent { self: Profile =>
 case class Collaborator(
   userName: String,
   repositoryName: String,
-  collaboratorName: String
+  collaboratorName: String,
+  role: String
 )
+
+sealed abstract class Role(val name: String)
+
+object Role {
+  object ADMIN extends Role("ADMIN")
+  object DEVELOPER extends Role("DEVELOPER")
+  object GUEST extends Role("GUEST")
+
+//  val values: Vector[Permission] = Vector(ADMIN, WRITE, READ)
+//
+//  private val map: Map[String, Permission] = values.map(enum => enum.name -> enum).toMap
+//
+//  def apply(name: String): Permission = map(name)
+//
+//  def valueOf(name: String): Option[Permission] = map.get(name)
+
+}

src/main/scala/gitbucket/core/model/Plugin.scala

@@ -1,19 +0,0 @@
-package gitbucket.core.model
-
-trait PluginComponent extends TemplateComponent { self: Profile =>
-  import profile.simple._
-  import self._
-
-  lazy val Plugins = TableQuery[Plugins]
-
-  class Plugins(tag: Tag) extends Table[Plugin](tag, "PLUGIN"){
-    val pluginId = column[String]("PLUGIN_ID", O PrimaryKey)
-    val version = column[String]("VERSION")
-    def * = (pluginId, version) <> (Plugin.tupled, Plugin.unapply)
-  }
-}
-
-case class Plugin(
-  pluginId: String,
-  version: String
-)

src/main/scala/gitbucket/core/model/Profile.scala

@@ -1,5 +1,6 @@
 package gitbucket.core.model
 
+import gitbucket.core.util.DatabaseConfig
 
 trait Profile {
   val profile: slick.driver.JdbcProfile
@@ -28,7 +29,9 @@ trait Profile {
 }
 
 trait ProfileProvider { self: Profile =>
-  val profile = slick.driver.H2Driver
+
+  lazy val profile = DatabaseConfig.slickDriver
+
 }
 
 trait CoreProfile extends ProfileProvider with Profile
@@ -49,7 +52,6 @@ trait CoreProfile extends ProfileProvider with Profile
   with SshKeyComponent
   with WebHookComponent
   with WebHookEventComponent
-  with PluginComponent
   with ProtectedBranchComponent
 
 object Profile extends CoreProfile

src/main/scala/gitbucket/core/model/Repository.scala

@@ -7,17 +7,61 @@ trait RepositoryComponent extends TemplateComponent { self: Profile =>
   lazy val Repositories = TableQuery[Repositories]
 
   class Repositories(tag: Tag) extends Table[Repository](tag, "REPOSITORY") with BasicTemplate {
-    val isPrivate = column[Boolean]("PRIVATE")
-    val description = column[String]("DESCRIPTION")
-    val defaultBranch = column[String]("DEFAULT_BRANCH")
-    val registeredDate = column[java.util.Date]("REGISTERED_DATE")
-    val updatedDate = column[java.util.Date]("UPDATED_DATE")
-    val lastActivityDate = column[java.util.Date]("LAST_ACTIVITY_DATE")
-    val originUserName = column[String]("ORIGIN_USER_NAME")
+    val isPrivate            = column[Boolean]("PRIVATE")
+    val description          = column[String]("DESCRIPTION")
+    val defaultBranch        = column[String]("DEFAULT_BRANCH")
+    val registeredDate       = column[java.util.Date]("REGISTERED_DATE")
+    val updatedDate          = column[java.util.Date]("UPDATED_DATE")
+    val lastActivityDate     = column[java.util.Date]("LAST_ACTIVITY_DATE")
+    val originUserName       = column[String]("ORIGIN_USER_NAME")
     val originRepositoryName = column[String]("ORIGIN_REPOSITORY_NAME")
-    val parentUserName = column[String]("PARENT_USER_NAME")
+    val parentUserName       = column[String]("PARENT_USER_NAME")
     val parentRepositoryName = column[String]("PARENT_REPOSITORY_NAME")
-    def * = (userName, repositoryName, isPrivate, description.?, defaultBranch, registeredDate, updatedDate, lastActivityDate, originUserName.?, originRepositoryName.?, parentUserName.?, parentRepositoryName.?) <> (Repository.tupled, Repository.unapply)
+    val issuesOption         = column[String]("ISSUES_OPTION")
+    val externalIssuesUrl    = column[String]("EXTERNAL_ISSUES_URL")
+    val wikiOption           = column[String]("WIKI_OPTION")
+    val externalWikiUrl      = column[String]("EXTERNAL_WIKI_URL")
+    val allowFork            = column[Boolean]("ALLOW_FORK")
+
+    def * = (
+      (userName, repositoryName, isPrivate, description.?, defaultBranch,
+      registeredDate, updatedDate, lastActivityDate, originUserName.?, originRepositoryName.?, parentUserName.?, parentRepositoryName.?),
+      (issuesOption, externalIssuesUrl.?, wikiOption, externalWikiUrl.?, allowFork)
+    ).shaped <> (
+      { case (repository, options) =>
+        Repository(
+          repository._1,
+          repository._2,
+          repository._3,
+          repository._4,
+          repository._5,
+          repository._6,
+          repository._7,
+          repository._8,
+          repository._9,
+          repository._10,
+          repository._11,
+          repository._12,
+          RepositoryOptions.tupled.apply(options)
+        )
+      }, { (r: Repository) =>
+        Some(((
+          r.userName,
+          r.repositoryName,
+          r.isPrivate,
+          r.description,
+          r.defaultBranch,
+          r.registeredDate,
+          r.updatedDate,
+          r.lastActivityDate,
+          r.originUserName,
+          r.originRepositoryName,
+          r.parentUserName,
+          r.parentRepositoryName
+        ),(
+          RepositoryOptions.unapply(r.options).get
+        )))
+      })
 
     def byPrimaryKey(owner: String, repository: String) = byRepository(owner, repository)
   }
@@ -35,5 +79,14 @@ case class Repository(
   originUserName: Option[String],
   originRepositoryName: Option[String],
   parentUserName: Option[String],
-  parentRepositoryName: Option[String]
+  parentRepositoryName: Option[String],
+  options: RepositoryOptions
+)
+
+case class RepositoryOptions(
+  issuesOption: String,
+  externalIssuesUrl: Option[String],
+  wikiOption: String,
+  externalWikiUrl: Option[String],
+  allowFork: Boolean
 )

src/main/scala/gitbucket/core/model/WebHook.scala

@@ -3,21 +3,42 @@ package gitbucket.core.model
 trait WebHookComponent extends TemplateComponent { self: Profile =>
   import profile.simple._
 
+  implicit val whContentTypeColumnType = MappedColumnType.base[WebHookContentType, String](whct => whct.code , code => WebHookContentType.valueOf(code))
+  
   lazy val WebHooks = TableQuery[WebHooks]
 
   class WebHooks(tag: Tag) extends Table[WebHook](tag, "WEB_HOOK") with BasicTemplate {
     val url = column[String]("URL")
     val token = column[Option[String]]("TOKEN", O.Nullable)
-    def * = (userName, repositoryName, url, token) <> ((WebHook.apply _).tupled, WebHook.unapply)
+    val ctype = column[WebHookContentType]("CTYPE", O.NotNull)
+    def * = (userName, repositoryName, url, ctype, token) <> ((WebHook.apply _).tupled, WebHook.unapply)
 
     def byPrimaryKey(owner: String, repository: String, url: String) = byRepository(owner, repository) && (this.url === url.bind)
   }
 }
 
+case class WebHookContentType(val code: String, val ctype: String)
+
+object WebHookContentType {
+  object JSON extends WebHookContentType("json", "application/json")
+
+  object FORM extends WebHookContentType("form", "application/x-www-form-urlencoded")
+
+  val values: Vector[WebHookContentType] = Vector(JSON, FORM)
+
+  private val map: Map[String, WebHookContentType] = values.map(enum => enum.code -> enum).toMap
+
+  def apply(code: String): WebHookContentType = map(code)
+
+  def valueOf(code: String): WebHookContentType = map(code)
+  def valueOpt(code: String): Option[WebHookContentType] = map.get(code)
+}
+
 case class WebHook(
   userName: String,
   repositoryName: String,
   url: String,
+  ctype: WebHookContentType,
   token: Option[String]
 )
 

src/main/scala/gitbucket/core/plugin/Plugin.scala

@@ -1,16 +1,18 @@
 package gitbucket.core.plugin
 
 import javax.servlet.ServletContext
-import gitbucket.core.controller.ControllerBase
+import gitbucket.core.controller.{Context, ControllerBase}
+import gitbucket.core.model.Account
+import gitbucket.core.service.RepositoryService.RepositoryInfo
 import gitbucket.core.service.SystemSettingsService.SystemSettings
 import gitbucket.core.util.ControlUtil._
-import gitbucket.core.util.Version
+import io.github.gitbucket.solidbase.model.Version
 
 /**
  * Trait for define plugin interface.
- * To provide plugin, put Plugin class which mixed in this trait into the package root.
+ * To provide a plugin, put a Plugin class which extends this class into the package root.
  */
-trait Plugin {
+abstract class Plugin {
 
   val pluginId: String
   val pluginName: String
@@ -77,6 +79,106 @@ trait Plugin {
    */
   def receiveHooks(registry: PluginRegistry, context: ServletContext, settings: SystemSettings): Seq[ReceiveHook] = Nil
 
+  /**
+   * Override to add global menus.
+   */
+  val globalMenus: Seq[(Context) => Option[Link]] = Nil
+
+  /**
+   * Override to add global menus.
+   */
+  def globalMenus(registry: PluginRegistry, context: ServletContext, settings: SystemSettings): Seq[(Context) => Option[Link]] = Nil
+
+  /**
+   * Override to add repository menus.
+   */
+  val repositoryMenus: Seq[(RepositoryInfo, Context) => Option[Link]] = Nil
+
+  /**
+   * Override to add repository menus.
+   */
+  def repositoryMenus(registry: PluginRegistry, context: ServletContext, settings: SystemSettings): Seq[(RepositoryInfo, Context) => Option[Link]] = Nil
+
+  /**
+   * Override to add repository setting tabs.
+   */
+  val repositorySettingTabs: Seq[(RepositoryInfo, Context) => Option[Link]] = Nil
+
+  /**
+   * Override to add repository setting tabs.
+   */
+  def repositorySettingTabs(registry: PluginRegistry, context: ServletContext, settings: SystemSettings): Seq[(RepositoryInfo, Context) => Option[Link]] = Nil
+
+  /**
+   * Override to add profile tabs.
+   */
+  val profileTabs: Seq[(Account, Context) => Option[Link]] = Nil
+
+  /**
+   * Override to add profile tabs.
+   */
+  def profileTabs(registry: PluginRegistry, context: ServletContext, settings: SystemSettings): Seq[(Account, Context) => Option[Link]] = Nil
+
+  /**
+   * Override to add system setting menus.
+   */
+  val systemSettingMenus: Seq[(Context) => Option[Link]] = Nil
+
+  /**
+   * Override to add system setting menus.
+   */
+  def systemSettingMenus(registry: PluginRegistry, context: ServletContext, settings: SystemSettings): Seq[(Context) => Option[Link]] = Nil
+
+  /**
+   * Override to add account setting menus.
+   */
+  val accountSettingMenus: Seq[(Context) => Option[Link]] = Nil
+
+  /**
+   * Override to add account setting menus.
+   */
+  def accountSettingMenus(registry: PluginRegistry, context: ServletContext, settings: SystemSettings): Seq[(Context) => Option[Link]] = Nil
+
+  /**
+   * Override to add dashboard tabs.
+   */
+  val dashboardTabs: Seq[(Context) => Option[Link]] = Nil
+
+  /**
+   * Override to add dashboard tabs.
+   */
+  def dashboardTabs(registry: PluginRegistry, context: ServletContext, settings: SystemSettings): Seq[(Context) => Option[Link]] = Nil
+
+  /**
+   * Override to add assets mappings.
+   */
+  val assetsMappings: Seq[(String, String)] = Nil
+
+  /**
+   * Override to add assets mappings.
+   */
+  def assetsMappings(registry: PluginRegistry, context: ServletContext, settings: SystemSettings): Seq[(String, String)] = Nil
+
+  /**
+   * Override to add text decorators.
+   */
+  val textDecorators: Seq[TextDecorator] = Nil
+
+  /**
+   * Override to add text decorators.
+   */
+  def textDecorators(registry: PluginRegistry, context: ServletContext, settings: SystemSettings): Seq[TextDecorator] = Nil
+
+  /**
+   * Override to add suggestion provider.
+   */
+  val suggestionProviders: Seq[SuggestionProvider] = Nil
+
+  /**
+   * Override to add suggestion provider.
+   */
+  def suggestionProviders(registry: PluginRegistry, context: ServletContext, settings: SystemSettings): Seq[SuggestionProvider] = Nil
+
   /**
    * This method is invoked in initialization of plugin system.
    * Register plugin functionality to PluginRegistry.
@@ -100,6 +202,36 @@ trait Plugin {
     (receiveHooks ++ receiveHooks(registry, context, settings)).foreach { receiveHook =>
       registry.addReceiveHook(receiveHook)
     }
+    (globalMenus ++ globalMenus(registry, context, settings)).foreach { globalMenu =>
+      registry.addGlobalMenu(globalMenu)
+    }
+    (repositoryMenus ++ repositoryMenus(registry, context, settings)).foreach { repositoryMenu =>
+      registry.addRepositoryMenu(repositoryMenu)
+    }
+    (repositorySettingTabs ++ repositorySettingTabs(registry, context, settings)).foreach { repositorySettingTab =>
+      registry.addRepositorySettingTab(repositorySettingTab)
+    }
+    (profileTabs ++ profileTabs(registry, context, settings)).foreach { profileTab =>
+      registry.addProfileTab(profileTab)
+    }
+    (systemSettingMenus ++ systemSettingMenus(registry, context, settings)).foreach { systemSettingMenu =>
+      registry.addSystemSettingMenu(systemSettingMenu)
+    }
+    (accountSettingMenus ++ accountSettingMenus(registry, context, settings)).foreach { accountSettingMenu =>
+      registry.addAccountSettingMenu(accountSettingMenu)
+    }
+    (dashboardTabs ++ dashboardTabs(registry, context, settings)).foreach { dashboardTab =>
+      registry.addDashboardTab(dashboardTab)
+    }
+    (assetsMappings ++ assetsMappings(registry, context, settings)).foreach { assetMapping =>
+      registry.addAssetsMapping((assetMapping._1, assetMapping._2, getClass.getClassLoader))
+    }
+    (textDecorators ++ textDecorators(registry, context, settings)).foreach { textDecorator =>
+      registry.addTextDecorator(textDecorator)
+    }
+    (suggestionProviders ++ suggestionProviders(registry, context, settings)).foreach { suggestionProvider =>
+      registry.addSuggestionProvider(suggestionProvider)
+    }
   }
 
   /**

src/main/scala/gitbucket/core/plugin/PluginRegistory.scala

@@ -3,16 +3,18 @@ package gitbucket.core.plugin
 import java.io.{File, FilenameFilter, InputStream}
 import java.net.URLClassLoader
 import javax.servlet.ServletContext
-import javax.servlet.http.{HttpServletRequest, HttpServletResponse}
 
 import gitbucket.core.controller.{Context, ControllerBase}
+import gitbucket.core.model.Account
 import gitbucket.core.service.ProtectedBranchService.ProtectedBranchReceiveHook
 import gitbucket.core.service.RepositoryService.RepositoryInfo
 import gitbucket.core.service.SystemSettingsService.SystemSettings
 import gitbucket.core.util.ControlUtil._
+import gitbucket.core.util.DatabaseConfig
 import gitbucket.core.util.Directory._
-import gitbucket.core.util.JDBCUtil._
-import gitbucket.core.util.{Version, Versions}
+import io.github.gitbucket.solidbase.Solidbase
+import io.github.gitbucket.solidbase.manager.JDBCVersionManager
+import io.github.gitbucket.solidbase.model.Module
 import org.apache.commons.codec.binary.{Base64, StringUtils}
 import org.slf4j.LoggerFactory
 
@@ -33,9 +35,20 @@ class PluginRegistry {
   private val receiveHooks = new ListBuffer[ReceiveHook]
   receiveHooks += new ProtectedBranchReceiveHook()
 
-  def addPlugin(pluginInfo: PluginInfo): Unit = {
-    plugins += pluginInfo
-  }
+  private val globalMenus = new ListBuffer[(Context) => Option[Link]]
+  private val repositoryMenus = new ListBuffer[(RepositoryInfo, Context) => Option[Link]]
+  private val repositorySettingTabs = new ListBuffer[(RepositoryInfo, Context) => Option[Link]]
+  private val profileTabs = new ListBuffer[(Account, Context) => Option[Link]]
+  private val systemSettingMenus = new ListBuffer[(Context) => Option[Link]]
+  private val accountSettingMenus = new ListBuffer[(Context) => Option[Link]]
+  private val dashboardTabs = new ListBuffer[(Context) => Option[Link]]
+  private val assetsMappings = new ListBuffer[(String, String, ClassLoader)]
+  private val textDecorators = new ListBuffer[TextDecorator]
+
+  private val suggestionProviders = new ListBuffer[SuggestionProvider]
+  suggestionProviders += new UserNameSuggestionProvider()
+
+  def addPlugin(pluginInfo: PluginInfo): Unit = plugins += pluginInfo
 
   def getPlugins(): List[PluginInfo] = plugins.toList
 
@@ -56,42 +69,26 @@ class PluginRegistry {
 
   def getImage(id: String): String = images(id)
 
-  def addController(path: String, controller: ControllerBase): Unit = {
-    controllers += ((controller, path))
-  }
+  def addController(path: String, controller: ControllerBase): Unit = controllers += ((controller, path))
 
   @deprecated("Use addController(path: String, controller: ControllerBase) instead", "3.4.0")
-  def addController(controller: ControllerBase, path: String): Unit = {
-    addController(path, controller)
-  }
+  def addController(controller: ControllerBase, path: String): Unit = addController(path, controller)
 
   def getControllers(): Seq[(ControllerBase, String)] = controllers.toSeq
 
-  def addJavaScript(path: String, script: String): Unit = {
-    javaScripts += ((path, script))
-  }
+  def addJavaScript(path: String, script: String): Unit = javaScripts += ((path, script))
 
-  def getJavaScript(currentPath: String): List[String] = {
-    javaScripts.filter(x => currentPath.matches(x._1)).toList.map(_._2)
-  }
+  def getJavaScript(currentPath: String): List[String] = javaScripts.filter(x => currentPath.matches(x._1)).toList.map(_._2)
 
-  def addRenderer(extension: String, renderer: Renderer): Unit = {
-    renderers += ((extension, renderer))
-  }
+  def addRenderer(extension: String, renderer: Renderer): Unit = renderers += ((extension, renderer))
 
-  def getRenderer(extension: String): Renderer = {
-    renderers.get(extension).getOrElse(DefaultRenderer)
-  }
+  def getRenderer(extension: String): Renderer = renderers.get(extension).getOrElse(DefaultRenderer)
 
   def renderableExtensions: Seq[String] = renderers.keys.toSeq
 
-  def addRepositoryRouting(routing: GitRepositoryRouting): Unit = {
-    repositoryRoutings += routing
-  }
+  def addRepositoryRouting(routing: GitRepositoryRouting): Unit = repositoryRoutings += routing
 
-  def getRepositoryRoutings(): Seq[GitRepositoryRouting] = {
-    repositoryRoutings.toSeq
-  }
+  def getRepositoryRoutings(): Seq[GitRepositoryRouting] = repositoryRoutings.toSeq
 
   def getRepositoryRouting(repositoryPath: String): Option[GitRepositoryRouting] = {
     PluginRegistry().getRepositoryRoutings().find {
@@ -101,24 +98,49 @@ class PluginRegistry {
     }
   }
 
-  def addReceiveHook(commitHook: ReceiveHook): Unit = {
-    receiveHooks += commitHook
-  }
+  def addReceiveHook(commitHook: ReceiveHook): Unit = receiveHooks += commitHook
 
   def getReceiveHooks: Seq[ReceiveHook] = receiveHooks.toSeq
 
-  private case class GlobalAction(
-    method: String,
-    path: String,
-    function: (HttpServletRequest, HttpServletResponse, Context) => Any
-  )
+  def addGlobalMenu(globalMenu: (Context) => Option[Link]): Unit = globalMenus += globalMenu
 
-  private case class RepositoryAction(
-    method: String,
-    path: String,
-    function: (HttpServletRequest, HttpServletResponse, Context, RepositoryInfo) => Any
-  )
+  def getGlobalMenus: Seq[(Context) => Option[Link]] = globalMenus.toSeq
 
+  def addRepositoryMenu(repositoryMenu: (RepositoryInfo, Context) => Option[Link]): Unit = repositoryMenus += repositoryMenu
+
+  def getRepositoryMenus: Seq[(RepositoryInfo, Context) => Option[Link]] = repositoryMenus.toSeq
+
+  def addRepositorySettingTab(repositorySettingTab: (RepositoryInfo, Context) => Option[Link]): Unit = repositorySettingTabs += repositorySettingTab
+
+  def getRepositorySettingTabs: Seq[(RepositoryInfo, Context) => Option[Link]] = repositorySettingTabs.toSeq
+
+  def addProfileTab(profileTab: (Account, Context) => Option[Link]): Unit = profileTabs += profileTab
+
+  def getProfileTabs: Seq[(Account, Context) => Option[Link]] = profileTabs.toSeq
+
+  def addSystemSettingMenu(systemSettingMenu: (Context) => Option[Link]): Unit = systemSettingMenus += systemSettingMenu
+
+  def getSystemSettingMenus: Seq[(Context) => Option[Link]] = systemSettingMenus.toSeq
+
+  def addAccountSettingMenu(accountSettingMenu: (Context) => Option[Link]): Unit = accountSettingMenus += accountSettingMenu
+
+  def getAccountSettingMenus: Seq[(Context) => Option[Link]] = accountSettingMenus.toSeq
+
+  def addDashboardTab(dashboardTab: (Context) => Option[Link]): Unit = dashboardTabs += dashboardTab
+
+  def getDashboardTabs: Seq[(Context) => Option[Link]] = dashboardTabs.toSeq
+
+  def addAssetsMapping(assetsMapping: (String, String, ClassLoader)): Unit = assetsMappings += assetsMapping
+
+  def getAssetsMappings: Seq[(String, String, ClassLoader)] = assetsMappings.toSeq
+
+  def addTextDecorator(textDecorator: TextDecorator): Unit = textDecorators += textDecorator
+
+  def getTextDecorators: Seq[TextDecorator] = textDecorators.toSeq
+
+  def addSuggestionProvider(suggestionProvider: SuggestionProvider): Unit = suggestionProviders += suggestionProvider
+
+  def getSuggestionProviders: Seq[SuggestionProvider] = suggestionProviders.toSeq
 }
 
 /**
@@ -140,6 +162,8 @@ object PluginRegistry {
    */
   def initialize(context: ServletContext, settings: SystemSettings, conn: java.sql.Connection): Unit = {
     val pluginDir = new File(PluginHome)
+    val manager = new JDBCVersionManager(conn)
+
     if(pluginDir.exists && pluginDir.isDirectory){
       pluginDir.listFiles(new FilenameFilter {
         override def accept(dir: File, name: String): Boolean = name.endsWith(".jar")
@@ -149,37 +173,29 @@ object PluginRegistry {
           val plugin = classLoader.loadClass("Plugin").newInstance().asInstanceOf[Plugin]
 
           // Migration
-          val headVersion = plugin.versions.head
-          val currentVersion = conn.find("SELECT * FROM PLUGIN WHERE PLUGIN_ID = ?", plugin.pluginId)(_.getString("VERSION")) match {
-            case Some(x) => {
-              val dim = x.split("\\.")
-              Version(dim(0).toInt, dim(1).toInt)
-            }
-            case None => Version(0, 0)
-          }
+          val solidbase = new Solidbase()
+          solidbase.migrate(conn, classLoader, DatabaseConfig.liquiDriver, new Module(plugin.pluginId, plugin.versions: _*))
 
-          Versions.update(conn, headVersion, currentVersion, plugin.versions, new URLClassLoader(Array(pluginJar.toURI.toURL))){ conn =>
-            currentVersion.versionString match {
-              case "0.0" =>
-                conn.update("INSERT INTO PLUGIN (PLUGIN_ID, VERSION) VALUES (?, ?)", plugin.pluginId, headVersion.versionString)
-              case _ =>
-                conn.update("UPDATE PLUGIN SET VERSION = ? WHERE PLUGIN_ID = ?", headVersion.versionString, plugin.pluginId)
-            }
+          // Check version
+          val databaseVersion = manager.getCurrentVersion(plugin.pluginId)
+          val pluginVersion = plugin.versions.last.getVersion
+          if(databaseVersion != pluginVersion){
+            throw new IllegalStateException(s"Plugin version is ${pluginVersion}, but database version is ${databaseVersion}")
           }
 
           // Initialize
           plugin.initialize(instance, context, settings)
           instance.addPlugin(PluginInfo(
-            pluginId    = plugin.pluginId,
-            pluginName  = plugin.pluginName,
-            version     = plugin.versions.head.versionString,
-            description = plugin.description,
-            pluginClass = plugin
+            pluginId      = plugin.pluginId,
+            pluginName    = plugin.pluginName,
+            pluginVersion = plugin.versions.last.getVersion,
+            description   = plugin.description,
+            pluginClass   = plugin
           ))
 
         } catch {
           case e: Throwable => {
-            logger.error(s"Error during plugin initialization", e)
+            logger.error(s"Error during plugin initialization: ${pluginJar.getAbsolutePath}", e)
           }
         }
       }
@@ -201,10 +217,12 @@ object PluginRegistry {
 
 }
 
+case class Link(id: String, label: String, path: String, icon: Option[String] = None)
+
 case class PluginInfo(
   pluginId: String,
   pluginName: String,
-  version: String,
+  pluginVersion: String,
   description: String,
   pluginClass: Plugin
 )

src/main/scala/gitbucket/core/plugin/SuggestionProvider.scala

@@ -0,0 +1,27 @@
+package gitbucket.core.plugin
+
+import gitbucket.core.controller.Context
+import gitbucket.core.service.RepositoryService.RepositoryInfo
+
+trait SuggestionProvider {
+
+  val id: String
+  val prefix: String
+  val suffix: String = " "
+  val context: Seq[String]
+
+  def values(repository: RepositoryInfo): Seq[String]
+  def template(implicit context: Context): String = "value"
+  def additionalScript(implicit context: Context): String = ""
+
+}
+
+class UserNameSuggestionProvider extends SuggestionProvider {
+  override val id: String = "user"
+  override val prefix: String = "@"
+  override val context: Seq[String] = Seq("issues")
+  override def values(repository: RepositoryInfo): Seq[String] = Nil
+  override def template(implicit context: Context): String = "'@' + value"
+  override def additionalScript(implicit context: Context): String =
+    s"""$$.get('${context.path}/_user/proposals', { query: '', user: true, group: false }, function (data) { user = data.options; });"""
+}

src/main/scala/gitbucket/core/plugin/TextDecorator.scala

@@ -0,0 +1,10 @@
+package gitbucket.core.plugin
+
+import gitbucket.core.controller.Context
+import gitbucket.core.service.RepositoryService.RepositoryInfo
+
+trait TextDecorator {
+
+  def decorate(text: String, repository: RepositoryInfo)(implicit context: Context): String
+
+}

src/main/scala/gitbucket/core/service/AccountService.scala

@@ -97,6 +97,12 @@ trait AccountService {
       Accounts filter (_.removed === false.bind) sortBy(_.userName) list
     }
 
+  def isLastAdministrator(account: Account)(implicit s: Session): Boolean = {
+    if(account.isAdmin){
+      (Accounts filter (_.removed === false.bind) filter (_.isAdmin === true.bind) map (_.userName.length)).first == 1
+    } else false
+  }
+
   def createAccount(userName: String, password: String, fullName: String, mailAddress: String, isAdmin: Boolean, url: Option[String])
                    (implicit s: Session): Unit =
     Accounts insert Account(
@@ -175,12 +181,11 @@ trait AccountService {
   def removeUserRelatedData(userName: String)(implicit s: Session): Unit = {
     GroupMembers.filter(_.userName === userName.bind).delete
     Collaborators.filter(_.collaboratorName === userName.bind).delete
-    Repositories.filter(_.userName === userName.bind).delete
   }
 
   def getGroupNames(userName: String)(implicit s: Session): List[String] = {
     List(userName) ++
-      Collaborators.filter(_.collaboratorName === userName.bind).sortBy(_.userName).map(_.userName).list
+      Collaborators.filter(_.collaboratorName === userName.bind).sortBy(_.userName).map(_.userName).list.distinct
   }
 
 }

src/main/scala/gitbucket/core/service/CommitsService.scala

@@ -42,12 +42,18 @@ trait CommitsService {
       updatedDate       = currentDate,
       issueId           = issueId)
 
+  def updateCommitCommentPosition(commentId: Int, commitId: String, oldLine: Option[Int], newLine: Option[Int])(implicit s: Session): Unit =
+    CommitComments.filter(_.byPrimaryKey(commentId))
+      .map { t =>
+        (t.commitId, t.oldLine, t.newLine)
+      }.update(commitId, oldLine, newLine)
+
   def updateCommitComment(commentId: Int, content: String)(implicit s: Session) =
     CommitComments
       .filter (_.byPrimaryKey(commentId))
       .map { t =>
-      t.content -> t.updatedDate
-    }.update (content, currentDate)
+        t.content -> t.updatedDate
+      }.update (content, currentDate)
 
   def deleteCommitComment(commentId: Int)(implicit s: Session) =
     CommitComments filter (_.byPrimaryKey(commentId)) delete

src/main/scala/gitbucket/core/service/HandleCommentService.scala

@@ -13,7 +13,7 @@ trait HandleCommentService {
     with WebHookService with WebHookIssueCommentService with WebHookPullRequestService =>
 
   /**
-   * @see [[https://github.com/takezoe/gitbucket/wiki/CommentAction]]
+   * @see [[https://github.com/gitbucket/gitbucket/wiki/CommentAction]]
    */
   def handleComment(issue: Issue, content: Option[String], repository: RepositoryService.RepositoryInfo, actionOpt: Option[String])
                    (implicit context: Context, s: Session) = {
@@ -54,18 +54,20 @@ trait HandleCommentService {
 
       // call web hooks
       action match {
-        case None => commentId.map{ commentIdSome => callIssueCommentWebHook(repository, issue, commentIdSome, context.loginAccount.get) }
-        case Some(act) => val webHookAction = act match {
-          case "open"   => "opened"
-          case "reopen" => "reopened"
-          case "close"  => "closed"
-          case _ => act
-        }
-          if(issue.isPullRequest){
+        case None => commentId.map { commentIdSome => callIssueCommentWebHook(repository, issue, commentIdSome, context.loginAccount.get) }
+        case Some(act) => {
+          val webHookAction = act match {
+            case "open"   => "opened"
+            case "reopen" => "reopened"
+            case "close"  => "closed"
+            case _ => act
+          }
+          if (issue.isPullRequest) {
             callPullRequestWebHook(webHookAction, repository, issue.issueId, context.baseUrl, context.loginAccount.get)
           } else {
             callIssuesWebHook(webHookAction, repository, issue, context.baseUrl, context.loginAccount.get)
           }
+        }
       }
 
       // notifications

src/main/scala/gitbucket/core/service/IssuesService.scala

@@ -13,12 +13,13 @@ import scala.slick.jdbc.{StaticQuery => Q}
 import Q.interpolation
 
 
+
 trait IssuesService {
-  self: AccountService =>
+  self: AccountService with RepositoryService =>
   import IssuesService._
 
   def getIssue(owner: String, repository: String, issueId: String)(implicit s: Session) =
-    if (issueId forall (_.isDigit))
+    if (isInteger(issueId))
       Issues filter (_.byPrimaryKey(owner, repository, issueId.toInt)) firstOption
     else None
 
@@ -34,6 +35,10 @@ trait IssuesService {
     .map{ case ((t1, t2), t3) => (t1, t2, t3) }
     .list
 
+  def getMergedComment(owner: String, repository: String, issueId: Int)(implicit s: Session): Option[(IssueComment, Account)] = {
+    getCommentsForApi(owner, repository, issueId).collectFirst { case (comment, account, _) if comment.action == "merged" => (comment, account) }
+  }
+
   def getComment(owner: String, repository: String, commentId: String)(implicit s: Session) =
     if (commentId forall (_.isDigit))
       IssueComments filter { t =>
@@ -108,25 +113,41 @@ trait IssuesService {
       }
       import gitbucket.core.model.Profile.commitStateColumnType
       val query = Q.query[Seq[(String, String, Int)], (String, String, Int, Int, Int, Option[String], Option[CommitState], Option[String], Option[String])](s"""
-        SELECT SUMM.USER_NAME, SUMM.REPOSITORY_NAME, SUMM.ISSUE_ID, CS_ALL, CS_SUCCESS
-             , CSD.CONTEXT, CSD.STATE, CSD.TARGET_URL, CSD.DESCRIPTION
-        FROM (SELECT
-           PR.USER_NAME
-         , PR.REPOSITORY_NAME
-         , PR.ISSUE_ID
-         , COUNT(CS.STATE) AS CS_ALL
-         , SUM(CS.STATE='success') AS CS_SUCCESS
-         , PR.COMMIT_ID_TO AS COMMIT_ID
+        SELECT
+          SUMM.USER_NAME,
+          SUMM.REPOSITORY_NAME,
+          SUMM.ISSUE_ID,
+          CS_ALL,
+          CS_SUCCESS,
+          CSD.CONTEXT,
+          CSD.STATE,
+          CSD.TARGET_URL,
+          CSD.DESCRIPTION
+        FROM (
+          SELECT
+            PR.USER_NAME,
+            PR.REPOSITORY_NAME,
+            PR.ISSUE_ID,
+            COUNT(CS.STATE) AS CS_ALL,
+            CSS.CS_SUCCESS  AS CS_SUCCESS,
+            PR.COMMIT_ID_TO AS COMMIT_ID
           FROM PULL_REQUEST PR
           JOIN COMMIT_STATUS CS
-            ON PR.USER_NAME=CS.USER_NAME
-           AND PR.REPOSITORY_NAME=CS.REPOSITORY_NAME
-           AND PR.COMMIT_ID_TO=CS.COMMIT_ID
-         WHERE $issueIdQuery
-         GROUP BY PR.USER_NAME, PR.REPOSITORY_NAME, PR.ISSUE_ID) as SUMM
+            ON PR.USER_NAME = CS.USER_NAME AND PR.REPOSITORY_NAME = CS.REPOSITORY_NAME AND PR.COMMIT_ID_TO = CS.COMMIT_ID
+          JOIN (
+            SELECT
+              COUNT(*) AS CS_SUCCESS,
+              USER_NAME,
+              REPOSITORY_NAME,
+              COMMIT_ID
+            FROM COMMIT_STATUS WHERE STATE = 'success' GROUP BY USER_NAME, REPOSITORY_NAME, COMMIT_ID
+          ) CSS ON PR.USER_NAME = CSS.USER_NAME AND PR.REPOSITORY_NAME = CSS.REPOSITORY_NAME AND PR.COMMIT_ID_TO = CSS.COMMIT_ID
+          WHERE $issueIdQuery
+          GROUP BY PR.USER_NAME, PR.REPOSITORY_NAME, PR.ISSUE_ID, CSS.CS_SUCCESS
+        ) as SUMM
         LEFT OUTER JOIN COMMIT_STATUS CSD
           ON SUMM.CS_ALL = 1 AND SUMM.COMMIT_ID = CSD.COMMIT_ID""");
-      query(issueList).list.map{
+      query(issueList).list.map {
         case(userName, repositoryName, issueId, count, successCount, context, state, targetUrl, description) =>
           (userName, repositoryName, issueId) -> CommitStatusInfo(count, successCount, context, state, targetUrl, description)
         }.toMap
@@ -147,66 +168,62 @@ trait IssuesService {
                  (implicit s: Session): List[IssueInfo] = {
     // get issues and comment count and labels
     val result = searchIssueQueryBase(condition, pullRequest, offset, limit, repos)
-        .leftJoin (IssueLabels) .on { case ((t1, t2), t3) => t1.byIssue(t3.userName, t3.repositoryName, t3.issueId) }
-        .leftJoin (Labels)      .on { case (((t1, t2), t3), t4) => t3.byLabel(t4.userName, t4.repositoryName, t4.labelId) }
-        .leftJoin (Milestones)  .on { case ((((t1, t2), t3), t4), t5) => t1.byMilestone(t5.userName, t5.repositoryName, t5.milestoneId) }
-        .map { case ((((t1, t2), t3), t4), t5) =>
-          (t1, t2.commentCount, t4.labelId.?, t4.labelName.?, t4.color.?, t5.title.?)
-        }
-        .list
-        .splitWith { (c1, c2) =>
-          c1._1.userName       == c2._1.userName &&
-          c1._1.repositoryName == c2._1.repositoryName &&
-          c1._1.issueId        == c2._1.issueId
-        }
+      .leftJoin (IssueLabels) .on { case (((t1, t2), i), t3) => t1.byIssue(t3.userName, t3.repositoryName, t3.issueId) }
+      .leftJoin (Labels)      .on { case ((((t1, t2), i), t3), t4) => t3.byLabel(t4.userName, t4.repositoryName, t4.labelId) }
+      .leftJoin (Milestones)  .on { case (((((t1, t2), i), t3), t4), t5) => t1.byMilestone(t5.userName, t5.repositoryName, t5.milestoneId) }
+      .sortBy { case (((((t1, t2), i), t3), t4), t5) => i asc }
+      .map { case (((((t1, t2), i), t3), t4), t5) => (t1, t2.commentCount, t4.labelId.?, t4.labelName.?, t4.color.?, t5.title.?) }
+      .list
+      .splitWith { (c1, c2) => c1._1.userName == c2._1.userName && c1._1.repositoryName == c2._1.repositoryName && c1._1.issueId == c2._1.issueId }
+
     val status = getCommitStatues(result.map(_.head._1).map(is => (is.userName, is.repositoryName, is.issueId)))
 
     result.map { issues => issues.head match {
-          case (issue, commentCount, _, _, _, milestone) =>
-            IssueInfo(issue,
-             issues.flatMap { t => t._3.map (
-                 Label(issue.userName, issue.repositoryName, _, t._4.get, t._5.get)
-             )} toList,
-             milestone,
-             commentCount,
-             status.get(issue.userName, issue.repositoryName, issue.issueId))
-        }} toList
+      case (issue, commentCount, _, _, _, milestone) =>
+        IssueInfo(issue,
+          issues.flatMap { t => t._3.map (
+            Label(issue.userName, issue.repositoryName, _, t._4.get, t._5.get)
+          )} toList,
+          milestone,
+          commentCount,
+          status.get(issue.userName, issue.repositoryName, issue.issueId))
+    }} toList
   }
 
   /** for api
    * @return (issue, issueUser, commentCount, pullRequest, headRepo, headOwner)
    */
   def searchPullRequestByApi(condition: IssueSearchCondition, offset: Int, limit: Int, repos: (String, String)*)
-                 (implicit s: Session): List[(Issue, Account, Int, PullRequest, Repository, Account)] = {
+                            (implicit s: Session): List[(Issue, Account, Int, PullRequest, Repository, Account)] = {
     // get issues and comment count and labels
     searchIssueQueryBase(condition, true, offset, limit, repos)
-      .innerJoin(PullRequests).on { case ((t1, t2), t3) => t3.byPrimaryKey(t1.userName, t1.repositoryName, t1.issueId) }
-      .innerJoin(Repositories).on { case (((t1, t2), t3), t4) => t4.byRepository(t1.userName, t1.repositoryName) }
-      .innerJoin(Accounts).on { case ((((t1, t2), t3), t4), t5) => t5.userName === t1.openedUserName }
-      .innerJoin(Accounts).on { case (((((t1, t2), t3), t4), t5), t6) => t6.userName === t4.userName }
-      .map { case (((((t1, t2), t3), t4), t5), t6) =>
-          (t1, t5, t2.commentCount, t3, t4, t6)
-      }
+      .innerJoin(PullRequests).on { case (((t1, t2), i), t3) => t3.byPrimaryKey(t1.userName, t1.repositoryName, t1.issueId) }
+      .innerJoin(Repositories).on { case ((((t1, t2), i), t3), t4) => t4.byRepository(t1.userName, t1.repositoryName) }
+      .innerJoin(Accounts).on { case (((((t1, t2), i), t3), t4), t5) => t5.userName === t1.openedUserName }
+      .innerJoin(Accounts).on { case ((((((t1, t2), i), t3), t4), t5), t6) => t6.userName === t4.userName }
+      .sortBy { case ((((((t1, t2), i), t3), t4), t5), t6) => i asc }
+      .map { case ((((((t1, t2), i), t3), t4), t5), t6) => (t1, t5, t2.commentCount, t3, t4, t6) }
       .list
   }
 
   private def searchIssueQueryBase(condition: IssueSearchCondition, pullRequest: Boolean, offset: Int, limit: Int, repos: Seq[(String, String)])
-                 (implicit s: Session) =
+                                  (implicit s: Session) =
     searchIssueQuery(repos, condition, pullRequest)
-        .innerJoin(IssueOutline).on { (t1, t2) => t1.byIssue(t2.userName, t2.repositoryName, t2.issueId) }
-        .sortBy { case (t1, t2) =>
-          (condition.sort match {
-            case "created"  => t1.registeredDate
-            case "comments" => t2.commentCount
-            case "updated"  => t1.updatedDate
-          }) match {
-            case sort => condition.direction match {
-              case "asc"  => sort asc
-              case "desc" => sort desc
-            }
+      .innerJoin(IssueOutline).on { (t1, t2) => t1.byIssue(t2.userName, t2.repositoryName, t2.issueId) }
+      .sortBy { case (t1, t2) => t1.issueId desc }
+      .sortBy { case (t1, t2) =>
+        (condition.sort match {
+          case "created"  => t1.registeredDate
+          case "comments" => t2.commentCount
+          case "updated"  => t1.updatedDate
+        }) match {
+          case sort => condition.direction match {
+            case "asc"  => sort asc
+            case "desc" => sort desc
           }
         }
-        .drop(offset).take(limit)
+      }
+      .drop(offset).take(limit).zipWithIndex
 
 
   /**
@@ -218,9 +235,8 @@ trait IssuesService {
         .map { case (owner, repository) => t1.byRepository(owner, repository) }
         .foldLeft[Column[Boolean]](false) ( _ || _ ) &&
       (t1.closed           === (condition.state == "closed").bind) &&
-      //(t1.milestoneId      === condition.milestoneId.get.get.bind, condition.milestoneId.flatten.isDefined) &&
-      (t1.milestoneId.?    isEmpty, condition.milestone == Some(None)) &&
-      (t1.assignedUserName === condition.assigned.get.bind, condition.assigned.isDefined) &&
+      (t1.milestoneId.?      isEmpty, condition.milestone == Some(None)) &&
+      (t1.assignedUserName.? isEmpty, condition.assigned  == Some(None)) &&
       (t1.openedUserName   === condition.author.get.bind, condition.author.isDefined) &&
       (t1.pullRequest      === pullRequest.bind) &&
       // Milestone filter
@@ -228,6 +244,8 @@ trait IssuesService {
         (t2.byPrimaryKey(t1.userName, t1.repositoryName, t1.milestoneId)) &&
         (t2.title === condition.milestone.get.get.bind)
       } exists, condition.milestone.flatten.isDefined) &&
+      // Assignee filter
+      (t1.assignedUserName === condition.assigned.get.get.bind, condition.assigned.flatten.isDefined) &&
       // Label filter
       (IssueLabels filter { t2 =>
         (t2.byIssue(t1.userName, t1.repositoryName, t1.issueId)) &&
@@ -420,6 +438,11 @@ trait IssuesService {
     }
   }
 
+  def getAssignableUserNames(owner: String, repository: String)(implicit s: Session): List[String] = {
+    (getCollaboratorUserNames(owner, repository, Seq(Role.ADMIN, Role.DEVELOPER)) :::
+      (if (getAccountByUserName(owner).get.isGroupAccount) getGroupMembers(owner).map(_.userName) else List(owner))).distinct.sorted
+  }
+
 }
 
 object IssuesService {
@@ -431,7 +454,7 @@ object IssuesService {
       labels: Set[String] = Set.empty,
       milestone: Option[Option[String]] = None,
       author: Option[String] = None,
-      assigned: Option[String] = None,
+      assigned: Option[Option[String]] = None,
       mentioned: Option[String] = None,
       state: String = "open",
       sort: String = "created",
@@ -475,12 +498,15 @@ object IssuesService {
     def toURL: String =
       "?" + List(
         if(labels.isEmpty) None else Some("labels=" + urlEncode(labels.mkString(","))),
-        milestone.map { _ match {
+        milestone.map {
           case Some(x) => "milestone=" + urlEncode(x)
           case None    => "milestone=none"
-        }},
+        },
         author   .map(x => "author="    + urlEncode(x)),
-        assigned .map(x => "assigned="  + urlEncode(x)),
+        assigned.map {
+          case Some(x) => "assigned="  + urlEncode(x)
+          case None    => "assigned=none"
+        },
         mentioned.map(x => "mentioned=" + urlEncode(x)),
         Some("state="     + urlEncode(state)),
         Some("sort="      + urlEncode(sort)),
@@ -498,46 +524,6 @@ object IssuesService {
       if(value == null || value.isEmpty || (allow.nonEmpty && !allow.contains(value))) None else Some(value)
     }
 
-    /**
-     * Restores IssueSearchCondition instance from filter query.
-     */
-    def apply(filter: String, milestones: Map[String, Int]): IssueSearchCondition = {
-      val conditions = filter.split("[ 　\t]+").flatMap { x =>
-        x.split(":") match {
-           case Array(key, value) => Some((key, value))
-           case _ => None
-        }
-      }.groupBy(_._1).map { case (key, values) =>
-        key -> values.map(_._2).toSeq
-      }
-
-      val (sort, direction) = conditions.get("sort").flatMap(_.headOption).getOrElse("created-desc") match {
-        case "created-asc"   => ("created" , "asc" )
-        case "comments-desc" => ("comments", "desc")
-        case "comments-asc"  => ("comments", "asc" )
-        case "updated-desc"  => ("comments", "desc")
-        case "updated-asc"   => ("comments", "asc" )
-        case _               => ("created" , "desc")
-      }
-
-      IssueSearchCondition(
-        conditions.get("label").map(_.toSet).getOrElse(Set.empty),
-        conditions.get("milestone").flatMap(_.headOption) match {
-          case None         => None
-          case Some("none") => Some(None)
-          case Some(x)      => Some(Some(x)) //milestones.get(x).map(x => Some(x))
-        },
-        conditions.get("author").flatMap(_.headOption),
-        conditions.get("assignee").flatMap(_.headOption),
-        conditions.get("mentions").flatMap(_.headOption),
-        conditions.get("is").getOrElse(Seq.empty).find(x => x == "open" || x == "closed").getOrElse("open"),
-        sort,
-        direction,
-        conditions.get("visibility").flatMap(_.headOption),
-        conditions.get("group").map(_.toSet).getOrElse(Set.empty)
-      )
-    }
-
     /**
      * Restores IssueSearchCondition instance from request parameters.
      */
@@ -549,7 +535,10 @@ object IssuesService {
           case x      => Some(x)
         },
         param(request, "author"),
-        param(request, "assigned"),
+        param(request, "assigned").map {
+          case "none" => None
+          case x      => Some(x)
+        },
         param(request, "mentioned"),
         param(request, "state",     Seq("open", "closed")).getOrElse("open"),
         param(request, "sort",      Seq("created", "comments", "updated")).getOrElse("created"),

src/main/scala/gitbucket/core/service/MilestonesService.scala

@@ -41,7 +41,7 @@ trait MilestonesService {
 
   def getMilestonesWithIssueCount(owner: String, repository: String)(implicit s: Session): List[(Milestone, Int, Int)] = {
     val counts = Issues
-      .filter  { t => (t.byRepository(owner, repository)) && (t.milestoneId.? isDefined) }
+      .filter  { t => t.byRepository(owner, repository) && (t.milestoneId.? isDefined) }
       .groupBy { t => t.milestoneId -> t.closed }
       .map     { case (t1, t2) => t1._1 -> t1._2 -> t2.length }
       .toMap
@@ -52,6 +52,6 @@ trait MilestonesService {
   }
 
   def getMilestones(owner: String, repository: String)(implicit s: Session): List[Milestone] =
-    Milestones.filter(_.byRepository(owner, repository)).sortBy(_.milestoneId asc).list
+    Milestones.filter(_.byRepository(owner, repository)).sortBy(t => (t.dueDate.asc, t.closedDate.desc, t.milestoneId.desc)).list
 
 }

src/main/scala/gitbucket/core/service/PluginService.scala

@@ -1,24 +0,0 @@
-package gitbucket.core.service
-
-import gitbucket.core.model.Plugin
-import gitbucket.core.model.Profile._
-import profile.simple._
-
-trait PluginService {
-
-  def getPlugins()(implicit s: Session): List[Plugin] =
-    Plugins.sortBy(_.pluginId).list
-
-  def registerPlugin(plugin: Plugin)(implicit s: Session): Unit =
-    Plugins.insert(plugin)
-
-  def updatePlugin(plugin: Plugin)(implicit s: Session): Unit =
-    Plugins.filter(_.pluginId === plugin.pluginId.bind).map(_.version).update(plugin.version)
-
-  def deletePlugin(pluginId: String)(implicit s: Session): Unit =
-    Plugins.filter(_.pluginId === pluginId.bind).delete
-
-  def getPlugin(pluginId: String)(implicit s: Session): Option[Plugin] =
-    Plugins.filter(_.pluginId === pluginId.bind).firstOption
-
-}

src/main/scala/gitbucket/core/service/ProtectedBranchService.scala

@@ -86,7 +86,7 @@ object ProtectedBranchService {
     def getStopReason(isAllowNonFastForwards: Boolean, command: ReceiveCommand, pusher: String)(implicit session: Session): Option[String] = {
       if(enabled){
         command.getType() match {
-          case ReceiveCommand.Type.UPDATE|ReceiveCommand.Type.UPDATE_NONFASTFORWARD if isAllowNonFastForwards =>
+          case ReceiveCommand.Type.UPDATE_NONFASTFORWARD if isAllowNonFastForwards =>
             Some("Cannot force-push to a protected branch")
           case ReceiveCommand.Type.UPDATE|ReceiveCommand.Type.UPDATE_NONFASTFORWARD if needStatusCheck(pusher) =>
             unSuccessedContexts(command.getNewId.name) match {
@@ -98,7 +98,7 @@ object ProtectedBranchService {
             Some("Cannot delete a protected branch")
           case _ => None
         }
-      }else{
+      } else {
         None
       }
     }

src/main/scala/gitbucket/core/service/PullRequestService.scala

@@ -1,12 +1,22 @@
 package gitbucket.core.service
 
-import gitbucket.core.model.{Account, Issue, PullRequest, WebHook, CommitStatus, CommitState}
+import difflib.{Delta, DiffUtils}
+import gitbucket.core.model.{Session => _, _}
 import gitbucket.core.model.Profile._
+import gitbucket.core.util.ControlUtil._
+import gitbucket.core.util.Directory._
+import gitbucket.core.util.Implicits._
 import gitbucket.core.util.JGitUtil
+import gitbucket.core.util.JGitUtil.{CommitInfo, DiffInfo}
+import gitbucket.core.view
+import gitbucket.core.view.helpers
+import org.eclipse.jgit.api.Git
 import profile.simple._
 
+import scala.collection.JavaConverters._
 
-trait PullRequestService { self: IssuesService =>
+
+trait PullRequestService { self: IssuesService with CommitsService =>
   import PullRequestService._
 
   def getPullRequest(owner: String, repository: String, issueId: Int)
@@ -111,9 +121,26 @@ trait PullRequestService { self: IssuesService =>
   def updatePullRequests(owner: String, repository: String, branch: String)(implicit s: Session): Unit =
     getPullRequestsByRequest(owner, repository, branch, false).foreach { pullreq =>
       if(Repositories.filter(_.byRepository(pullreq.userName, pullreq.repositoryName)).exists.run){
+        // Update the git repository
         val (commitIdTo, commitIdFrom) = JGitUtil.updatePullRequest(
           pullreq.userName, pullreq.repositoryName, pullreq.branch, pullreq.issueId,
           pullreq.requestUserName, pullreq.requestRepositoryName, pullreq.requestBranch)
+
+        // Collect comment positions
+        val positions = getCommitComments(pullreq.userName, pullreq.repositoryName, pullreq.commitIdTo, true)
+          .collect {
+            case CommitComment(_, _, _, commentId, _, _, Some(file), None, Some(newLine), _, _, _) => (file, commentId, Right(newLine))
+            case CommitComment(_, _, _, commentId, _, _, Some(file), Some(oldLine), None, _, _, _) => (file, commentId, Left(oldLine))
+          }
+          .groupBy { case (file, _, _) => file }
+          .map { case (file, comments) => file ->
+            comments.map { case (_, commentId, lineNumber) => (commentId, lineNumber) }
+          }
+
+        // Update comments position
+        updatePullRequestCommentPositions(positions, pullreq.requestUserName, pullreq.requestRepositoryName, pullreq.commitIdTo, commitIdTo)
+
+        // Update commit id in the PULL_REQUEST table
         updateCommitId(pullreq.userName, pullreq.repositoryName, pullreq.issueId, commitIdTo, commitIdFrom)
       }
     }
@@ -137,6 +164,78 @@ trait PullRequestService { self: IssuesService =>
         .firstOption
     }
   }
+
+  private def updatePullRequestCommentPositions(positions: Map[String, Seq[(Int, Either[Int, Int])]], userName: String, repositoryName: String,
+                                                oldCommitId: String, newCommitId: String)(implicit s: Session): Unit = {
+
+    val (_, diffs) = getRequestCompareInfo(userName, repositoryName, oldCommitId, userName, repositoryName, newCommitId)
+
+    val patchs = positions.map { case (file, _) =>
+      diffs.find(x => x.oldPath == file).map { diff =>
+        (diff.oldContent, diff.newContent) match {
+          case (Some(oldContent), Some(newContent)) => {
+            val oldLines = oldContent.replace("\r\n", "\n").split("\n")
+            val newLines = newContent.replace("\r\n", "\n").split("\n")
+            file -> Option(DiffUtils.diff(oldLines.toList.asJava, newLines.toList.asJava))
+          }
+          case _ =>
+            file -> None
+        }
+      }.getOrElse {
+        file -> None
+      }
+    }
+
+    positions.foreach { case (file, comments) =>
+      patchs(file) match {
+        case Some(patch) => file -> comments.foreach { case (commentId, lineNumber) => lineNumber match {
+          case Left(oldLine)  => updateCommitCommentPosition(commentId, newCommitId, Some(oldLine), None)
+          case Right(newLine) =>
+            var counter = newLine
+            patch.getDeltas.asScala.filter(_.getOriginal.getPosition < newLine).foreach { delta =>
+              delta.getType match {
+                case Delta.TYPE.CHANGE =>
+                  if(delta.getOriginal.getPosition <= newLine - 1 && newLine <= delta.getOriginal.getPosition + delta.getRevised.getLines.size){
+                    counter = -1
+                  } else {
+                    counter = counter + (delta.getRevised.getLines.size - delta.getOriginal.getLines.size)
+                  }
+                case Delta.TYPE.INSERT => counter = counter + delta.getRevised.getLines.size
+                case Delta.TYPE.DELETE => counter = counter - delta.getOriginal.getLines.size
+              }
+            }
+            if(counter >= 0){
+              updateCommitCommentPosition(commentId, newCommitId, None, Some(counter))
+            }
+        }}
+        case _ => comments.foreach { case (commentId, lineNumber) => lineNumber match {
+          case Right(oldLine) => updateCommitCommentPosition(commentId, newCommitId, Some(oldLine), None)
+          case Left(newLine)  => updateCommitCommentPosition(commentId, newCommitId, None, Some(newLine))
+        }}
+      }
+    }
+  }
+
+  def getRequestCompareInfo(userName: String, repositoryName: String, branch: String,
+                            requestUserName: String, requestRepositoryName: String, requestCommitId: String): (Seq[Seq[CommitInfo]], Seq[DiffInfo]) =
+    using(
+      Git.open(getRepositoryDir(userName, repositoryName)),
+      Git.open(getRepositoryDir(requestUserName, requestRepositoryName))
+    ){ (oldGit, newGit) =>
+      val oldId = oldGit.getRepository.resolve(branch)
+      val newId = newGit.getRepository.resolve(requestCommitId)
+
+      val commits = newGit.log.addRange(oldId, newId).call.iterator.asScala.map { revCommit =>
+        new CommitInfo(revCommit)
+      }.toList.splitWith { (commit1, commit2) =>
+        helpers.date(commit1.commitTime) == view.helpers.date(commit2.commitTime)
+      }
+
+      val diffs = JGitUtil.getDiffs(newGit, oldId.getName, newId.getName, true)
+
+      (commits, diffs)
+    }
+
 }
 
 object PullRequestService {

src/main/scala/gitbucket/core/service/RepositoryCreationService.scala

@@ -21,12 +21,12 @@ trait RepositoryCreationService {
     // Insert to the database at first
     insertRepository(name, owner, description, isPrivate)
 
-    // Add collaborators for group repository
-    if(ownerAccount.isGroupAccount){
-      getGroupMembers(owner).foreach { member =>
-        addCollaborator(owner, name, member.userName)
-      }
-    }
+//    // Add collaborators for group repository
+//    if(ownerAccount.isGroupAccount){
+//      getGroupMembers(owner).foreach { member =>
+//        addCollaborator(owner, name, member.userName)
+//      }
+//    }
 
     // Insert default labels
     insertDefaultLabels(owner, name)

src/main/scala/gitbucket/core/service/RepositorySearchService.scala

@@ -53,7 +53,30 @@ trait RepositorySearchService { self: IssuesService =>
       }
     }
 
-  private def searchRepositoryFiles(git: Git, query: String): List[(String, String)] = {
+  def countWikiPages(owner: String, repository: String, query: String): Int =
+    using(Git.open(Directory.getWikiRepositoryDir(owner, repository))){ git =>
+      if(JGitUtil.isEmpty(git)) 0 else searchRepositoryFiles(git, query).length
+    }
+
+  def searchWikiPages(owner: String, repository: String, query: String): List[FileSearchResult] =
+    using(Git.open(Directory.getWikiRepositoryDir(owner, repository))){ git =>
+      if(JGitUtil.isEmpty(git)){
+        Nil
+      } else {
+        val files = searchRepositoryFiles(git, query)
+        val commits = JGitUtil.getLatestCommitFromPaths(git, files.map(_._1), "HEAD")
+        files.map { case (path, text) =>
+          val (highlightText, lineNumber) = getHighlightText(text, query)
+          FileSearchResult(
+            path.replaceFirst("\\.md$", ""),
+            commits(path).getCommitterIdent.getWhen,
+            highlightText,
+            lineNumber)
+        }
+      }
+    }
+
+  def searchRepositoryFiles(git: Git, query: String): List[(String, String)] = {
     val revWalk   = new RevWalk(git.getRepository)
     val objectId  = git.getRepository.resolve("HEAD")
     val revCommit = revWalk.parseCommit(objectId)

src/main/scala/gitbucket/core/service/RepositoryService.scala

@@ -1,7 +1,7 @@
 package gitbucket.core.service
 
 import gitbucket.core.controller.Context
-import gitbucket.core.model.{Collaborator, Repository, Account}
+import gitbucket.core.model.{Collaborator, Repository, RepositoryOptions, Account, Role}
 import gitbucket.core.model.Profile._
 import gitbucket.core.util.JGitUtil
 import profile.simple._
@@ -36,7 +36,15 @@ trait RepositoryService { self: AccountService =>
         originUserName       = originUserName,
         originRepositoryName = originRepositoryName,
         parentUserName       = parentUserName,
-        parentRepositoryName = parentRepositoryName)
+        parentRepositoryName = parentRepositoryName,
+        options              = RepositoryOptions(
+          issuesOption         = "PUBLIC", // TODO DISABLE for the forked repository?
+          externalIssuesUrl    = None,
+          wikiOption           = "PUBLIC", // TODO DISABLE for the forked repository?
+          externalWikiUrl      = None,
+          allowFork            = true
+        )
+      )
 
     IssueId insert (userName, repositoryName, 0)
   }
@@ -115,11 +123,8 @@ trait RepositoryService { self: AccountService =>
           repositoryName = newRepositoryName
         )) :_*)
 
-        if(account.isGroupAccount){
-          Collaborators.insertAll(getGroupMembers(newUserName).map(m => Collaborator(newUserName, newRepositoryName, m.userName)) :_*)
-        } else {
-          Collaborators.insertAll(collaborators.map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
-        }
+        // TODO Drop transfered owner from collaborators?
+        Collaborators.insertAll(collaborators.map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
 
         // Update activity messages
         Activities.filter { t =>
@@ -218,17 +223,19 @@ trait RepositoryService { self: AccountService =>
   }
 
   /**
-   * Returns the repositories without private repository that user does not have access right.
+   * Returns the repositories except private repository that user does not have access right.
    * Include public repository, private own repository and private but collaborator repository.
    *
    * @param userName the user name of collaborator
-   * @return the repository infomation list
+   * @return the repository information list
    */
   def getAllRepositories(userName: String)(implicit s: Session): List[(String, String)] = {
     Repositories.filter { t1 =>
       (t1.isPrivate === false.bind) ||
-      (t1.userName  === userName.bind) ||
-      (Collaborators.filter { t2 => t2.byRepository(t1.userName, t1.repositoryName) && (t2.collaboratorName === userName.bind)} exists)
+      (t1.userName  === userName.bind) || (t1.userName in (GroupMembers.filter(_.userName === userName.bind).map(_.groupName))) ||
+      (Collaborators.filter { t2 => t2.byRepository(t1.userName, t1.repositoryName) &&
+        ((t2.collaboratorName === userName.bind) || (t2.collaboratorName in GroupMembers.filter(_.userName === userName.bind).map(_.groupName)))
+      } exists)
     }.sortBy(_.lastActivityDate desc).map{ t =>
       (t.userName, t.repositoryName)
     }.list
@@ -237,8 +244,10 @@ trait RepositoryService { self: AccountService =>
   def getUserRepositories(userName: String, withoutPhysicalInfo: Boolean = false)
                          (implicit s: Session): List[RepositoryInfo] = {
     Repositories.filter { t1 =>
-      (t1.userName === userName.bind) ||
-        (Collaborators.filter { t2 => t2.byRepository(t1.userName, t1.repositoryName) && (t2.collaboratorName === userName.bind)} exists)
+      (t1.userName === userName.bind) || (t1.userName in (GroupMembers.filter(_.userName === userName.bind).map(_.groupName))) ||
+      (Collaborators.filter { t2 => t2.byRepository(t1.userName, t1.repositoryName) &&
+        ((t2.collaboratorName === userName.bind) || (t2.collaboratorName in GroupMembers.filter(_.userName === userName.bind).map(_.groupName)))
+      } exists)
     }.sortBy(_.lastActivityDate desc).list.map{ repository =>
       new RepositoryInfo(
         if(withoutPhysicalInfo){
@@ -273,8 +282,13 @@ trait RepositoryService { self: AccountService =>
       case Some(x) if(x.isAdmin) => Repositories
       // for Normal Users
       case Some(x) if(!x.isAdmin) =>
-        Repositories filter { t => (t.isPrivate === false.bind) || (t.userName === x.userName) ||
-          (Collaborators.filter { t2 => t2.byRepository(t.userName, t.repositoryName) && (t2.collaboratorName === x.userName.bind)} exists)
+        Repositories filter { t =>
+          (t.isPrivate === false.bind) || (t.userName === x.userName) ||
+          (t.userName in GroupMembers.filter(_.userName === x.userName.bind).map(_.groupName)) ||
+          (Collaborators.filter { t2 =>
+            t2.byRepository(t.userName, t.repositoryName) &&
+              ((t2.collaboratorName === x.userName.bind) || (t2.collaboratorName in GroupMembers.filter(_.userName === x.userName.bind).map(_.groupName)))
+          } exists)
         }
       // for Guests
       case None => Repositories filter(_.isPrivate === false.bind)
@@ -313,10 +327,13 @@ trait RepositoryService { self: AccountService =>
    * Save repository options.
    */
   def saveRepositoryOptions(userName: String, repositoryName: String,
-      description: Option[String], isPrivate: Boolean)(implicit s: Session): Unit =
+      description: Option[String], isPrivate: Boolean,
+      issuesOption: String, externalIssuesUrl: Option[String],
+      wikiOption: String, externalWikiUrl: Option[String],
+      allowFork: Boolean)(implicit s: Session): Unit =
     Repositories.filter(_.byRepository(userName, repositoryName))
-      .map { r => (r.description.?, r.isPrivate, r.updatedDate) }
-      .update (description, isPrivate, currentDate)
+      .map { r => (r.description.?, r.isPrivate, r.issuesOption, r.externalIssuesUrl.?, r.wikiOption, r.externalWikiUrl.?, r.allowFork, r.updatedDate) }
+      .update (description, isPrivate, issuesOption, externalIssuesUrl, wikiOption, externalWikiUrl, allowFork, currentDate)
 
   def saveRepositoryDefaultBranch(userName: String, repositoryName: String,
       defaultBranch: String)(implicit s: Session): Unit =
@@ -325,49 +342,64 @@ trait RepositoryService { self: AccountService =>
       .update (defaultBranch)
 
   /**
-   * Add collaborator to the repository.
-   *
-   * @param userName the user name of the repository owner
-   * @param repositoryName the repository name
-   * @param collaboratorName the collaborator name
+   * Add collaborator (user or group) to the repository.
    */
-  def addCollaborator(userName: String, repositoryName: String, collaboratorName: String)(implicit s: Session): Unit =
-    Collaborators insert Collaborator(userName, repositoryName, collaboratorName)
-
-  /**
-   * Remove collaborator from the repository.
-   * 
-   * @param userName the user name of the repository owner
-   * @param repositoryName the repository name
-   * @param collaboratorName the collaborator name
-   */
-  def removeCollaborator(userName: String, repositoryName: String, collaboratorName: String)(implicit s: Session): Unit =
-    Collaborators.filter(_.byPrimaryKey(userName, repositoryName, collaboratorName)).delete
+  def addCollaborator(userName: String, repositoryName: String, collaboratorName: String, role: String)(implicit s: Session): Unit =
+    Collaborators insert Collaborator(userName, repositoryName, collaboratorName, role)
 
   /**
    * Remove all collaborators from the repository.
-   *
-   * @param userName the user name of the repository owner
-   * @param repositoryName the repository name
    */
   def removeCollaborators(userName: String, repositoryName: String)(implicit s: Session): Unit =
     Collaborators.filter(_.byRepository(userName, repositoryName)).delete
 
   /**
-   * Returns the list of collaborators name which is sorted with ascending order.
-   * 
-   * @param userName the user name of the repository owner
-   * @param repositoryName the repository name
-   * @return the list of collaborators name
+   * Returns the list of collaborators name (user name or group name) which is sorted with ascending order.
    */
-  def getCollaborators(userName: String, repositoryName: String)(implicit s: Session): List[String] =
-    Collaborators.filter(_.byRepository(userName, repositoryName)).sortBy(_.collaboratorName).map(_.collaboratorName).list
+  def getCollaborators(userName: String, repositoryName: String)(implicit s: Session): List[(Collaborator, Boolean)] =
+    Collaborators
+      .innerJoin(Accounts).on(_.collaboratorName === _.userName)
+      .filter { case (t1, t2) => t1.byRepository(userName, repositoryName) }
+      .map { case (t1, t2) => (t1, t2.groupAccount) }
+      .sortBy { case (t1, t2) => t1.collaboratorName }
+      .list
 
-  def hasWritePermission(owner: String, repository: String, loginAccount: Option[Account])(implicit s: Session): Boolean = {
+  /**
+   * Returns the list of all collaborator name and permission which is sorted with ascending order.
+   * If a group is added as a collaborator, this method returns users who are belong to that group.
+   */
+  def getCollaboratorUserNames(userName: String, repositoryName: String, filter: Seq[Role] = Nil)(implicit s: Session): List[String] = {
+    val q1 = Collaborators
+      .innerJoin(Accounts).on { case (t1, t2) => (t1.collaboratorName === t2.userName) && (t2.groupAccount === false.bind) }
+      .filter { case (t1, t2) => t1.byRepository(userName, repositoryName) }
+      .map { case (t1, t2) => (t1.collaboratorName, t1.role) }
+
+    val q2 = Collaborators
+      .innerJoin(Accounts).on { case (t1, t2) => (t1.collaboratorName === t2.userName) && (t2.groupAccount === true.bind) }
+      .innerJoin(GroupMembers).on { case ((t1, t2), t3) => t2.userName === t3.groupName }
+      .filter { case ((t1, t2), t3) => t1.byRepository(userName, repositoryName) }
+      .map { case ((t1, t2), t3) => (t3.userName, t1.role) }
+
+    q1.union(q2).list.filter { x => filter.isEmpty || filter.exists(_.name == x._2) }.map(_._1)
+  }
+
+
+  def hasDeveloperRole(owner: String, repository: String, loginAccount: Option[Account])(implicit s: Session): Boolean = {
     loginAccount match {
       case Some(a) if(a.isAdmin) => true
       case Some(a) if(a.userName == owner) => true
-      case Some(a) if(getCollaborators(owner, repository).contains(a.userName)) => true
+      case Some(a) if(getGroupMembers(owner).exists(_.userName == a.userName)) => true
+      case Some(a) if(getCollaboratorUserNames(owner, repository, Seq(Role.ADMIN, Role.DEVELOPER)).contains(a.userName)) => true
+      case _ => false
+    }
+  }
+
+  def hasGuestRole(owner: String, repository: String, loginAccount: Option[Account])(implicit s: Session): Boolean = {
+    loginAccount match {
+      case Some(a) if(a.isAdmin) => true
+      case Some(a) if(a.userName == owner) => true
+      case Some(a) if(getGroupMembers(owner).exists(_.userName == a.userName)) => true
+      case Some(a) if(getCollaboratorUserNames(owner, repository, Seq(Role.ADMIN, Role.DEVELOPER, Role.GUEST)).contains(a.userName)) => true
       case _ => false
     }
   }
@@ -389,37 +421,39 @@ trait RepositoryService { self: AccountService =>
 object RepositoryService {
 
   case class RepositoryInfo(owner: String, name: String, repository: Repository,
-    issueCount: Int, pullCount: Int, commitCount: Int, forkedCount: Int,
+    issueCount: Int, pullCount: Int, forkedCount: Int,
     branchList: Seq[String], tags: Seq[JGitUtil.TagInfo], managers: Seq[String]) {
 
     /**
      * Creates instance with issue count and pull request count.
      */
     def this(repo: JGitUtil.RepositoryInfo, model: Repository, issueCount: Int, pullCount: Int, forkedCount: Int, managers: Seq[String]) =
-      this(
-        repo.owner, repo.name, model,
-        issueCount, pullCount, repo.commitCount, forkedCount,
-        repo.branchList, repo.tags, managers)
+      this(repo.owner, repo.name, model, issueCount, pullCount, forkedCount, repo.branchList, repo.tags, managers)
 
     /**
      * Creates instance without issue count and pull request count.
      */
     def this(repo: JGitUtil.RepositoryInfo, model: Repository, 	forkedCount: Int, managers: Seq[String]) =
-      this(
-        repo.owner, repo.name, model,
-        0, 0, repo.commitCount, forkedCount,
-        repo.branchList, repo.tags, managers)
+      this(repo.owner, repo.name, model, 0, 0, forkedCount, repo.branchList, repo.tags, managers)
 
     def httpUrl(implicit context: Context): String = RepositoryService.httpUrl(owner, name)
     def sshUrl(implicit context: Context): Option[String] = RepositoryService.sshUrl(owner, name)
+
+    def splitPath(path: String): (String, String) = {
+      val id = branchList.collectFirst {
+        case branch if(path == branch || path.startsWith(branch + "/")) => branch
+      } orElse tags.collectFirst {
+        case tag if(path == tag.name || path.startsWith(tag.name + "/")) => tag.name
+      } getOrElse path.split("/")(0)
+
+      (id, path.substring(id.length).stripPrefix("/"))
+    }
   }
 
   def httpUrl(owner: String, name: String)(implicit context: Context): String = s"${context.baseUrl}/git/${owner}/${name}.git"
   def sshUrl(owner: String, name: String)(implicit context: Context): Option[String] =
     if(context.settings.ssh){
-      context.loginAccount.flatMap { loginAccount =>
-        context.settings.sshAddress.map { x => s"ssh://${loginAccount.userName}@${x.host}:${x.port}/${owner}/${name}.git" }
-      }
+      context.settings.sshAddress.map { x => s"ssh://${x.genericUser}@${x.host}:${x.port}/${owner}/${name}.git" }
     } else None
   def openRepoUrl(openUrl: String)(implicit context: Context): String = s"github-${context.platform}://openRepo/${openUrl}"
 

src/main/scala/gitbucket/core/service/RequestCache.scala

@@ -11,7 +11,7 @@ import Implicits.request2Session
  * It may be called many times in one request, so each method stores
  * its result into the cache which available during a request.
  */
-trait RequestCache extends SystemSettingsService with AccountService with IssuesService {
+trait RequestCache extends SystemSettingsService with AccountService with IssuesService with RepositoryService {
 
   private implicit def context2Session(implicit context: Context): Session =
     request2Session(context.request)

src/main/scala/gitbucket/core/service/SshKeyService.scala

@@ -12,6 +12,9 @@ trait SshKeyService {
   def getPublicKeys(userName: String)(implicit s: Session): List[SshKey] =
     SshKeys.filter(_.userName === userName.bind).sortBy(_.sshKeyId).list
 
+  def getAllKeys()(implicit s: Session): List[SshKey] =
+    SshKeys.filter(_.publicKey.trim =!= "").list
+
   def deletePublicKey(userName: String, sshKeyId: Int)(implicit s: Session): Unit =
     SshKeys filter (_.byPrimaryKey(userName, sshKeyId)) delete
 

src/main/scala/gitbucket/core/service/SystemSettingsService.scala

@@ -73,7 +73,7 @@ trait SystemSettingsService {
         getValue(props, AllowAccountRegistration, false),
         getValue(props, AllowAnonymousAccess, true),
         getValue(props, IsCreateRepoOptionPublic, true),
-        getValue(props, Gravatar, true),
+        getValue(props, Gravatar, false),
         getValue(props, Notification, false),
         getOptionValue[Int](props, ActivityLogLimit, None),
         getValue(props, Ssh, false),
@@ -141,7 +141,11 @@ object SystemSettingsService {
       for {
         host <- sshHost if ssh
       }
-      yield SshAddress(host, sshPort.getOrElse(DefaultSshPort))
+      yield SshAddress(
+        host,
+        sshPort.getOrElse(DefaultSshPort),
+        "git"
+      )
   }
 
   case class Ldap(
@@ -169,7 +173,8 @@ object SystemSettingsService {
 
   case class SshAddress(
     host:String,
-    port:Int)
+    port:Int,
+    genericUser:String)
 
   val DefaultSshPort = 29418
   val DefaultSmtpPort = 25

src/main/scala/gitbucket/core/service/WebHookService.scala

@@ -1,27 +1,30 @@
 package gitbucket.core.service
 
-import java.io.ByteArrayInputStream
+import java.util.Date
 
 import fr.brouillard.oss.security.xhub.XHub
-import fr.brouillard.oss.security.xhub.XHub.{XHubDigest, XHubConverter}
+import fr.brouillard.oss.security.xhub.XHub.{XHubConverter, XHubDigest}
 import gitbucket.core.api._
-import gitbucket.core.model.{WebHook, Account, Issue, PullRequest, IssueComment, WebHookEvent, CommitComment}
+import gitbucket.core.model.{Account, CommitComment, Issue, IssueComment, PullRequest, WebHook, WebHookEvent}
 import gitbucket.core.model.Profile._
 import org.apache.http.client.utils.URLEncodedUtils
 import profile.simple._
 import gitbucket.core.util.JGitUtil.CommitInfo
 import gitbucket.core.util.RepositoryName
 import gitbucket.core.service.RepositoryService.RepositoryInfo
-
 import org.apache.http.NameValuePair
 import org.apache.http.client.entity.UrlEncodedFormEntity
 import org.apache.http.message.BasicNameValuePair
 import org.eclipse.jgit.api.Git
 import org.eclipse.jgit.lib.ObjectId
 import org.slf4j.LoggerFactory
+
 import scala.concurrent._
 import org.apache.http.HttpRequest
 import org.apache.http.HttpResponse
+import gitbucket.core.model.WebHookContentType
+import org.apache.http.client.entity.EntityBuilder
+import org.apache.http.entity.ContentType
 
 
 trait WebHookService {
@@ -33,15 +36,15 @@ trait WebHookService {
   def getWebHooks(owner: String, repository: String)(implicit s: Session): List[(WebHook, Set[WebHook.Event])] =
     WebHooks.filter(_.byRepository(owner, repository))
       .innerJoin(WebHookEvents).on { (w, t) => t.byWebHook(w) }
-      .map{ case (w,t) => w -> t.event }
+      .map { case (w,t) => w -> t.event }
       .list.groupBy(_._1).mapValues(_.map(_._2).toSet).toList.sortBy(_._1.url)
 
   /** get All WebHook informations of repository event */
   def getWebHooksByEvent(owner: String, repository: String, event: WebHook.Event)(implicit s: Session): List[WebHook] =
      WebHooks.filter(_.byRepository(owner, repository))
        .innerJoin(WebHookEvents).on { (wh, whe) => whe.byWebHook(wh) }
-       .filter{ case (wh, whe) => whe.event === event.bind}
-       .map{ case (wh, whe) => wh }
+       .filter { case (wh, whe) => whe.event === event.bind}
+       .map { case (wh, whe) => wh }
        .list.distinct
 
   /** get All WebHook information from repository to url */
@@ -49,20 +52,20 @@ trait WebHookService {
     WebHooks
       .filter(_.byPrimaryKey(owner, repository, url))
       .innerJoin(WebHookEvents).on { (w, t) => t.byWebHook(w) }
-      .map{ case (w,t) => w -> t.event }
+      .map { case (w,t) => w -> t.event }
       .list.groupBy(_._1).mapValues(_.map(_._2).toSet).headOption
 
-  def addWebHook(owner: String, repository: String, url :String, events: Set[WebHook.Event], token: Option[String])(implicit s: Session): Unit = {
-    WebHooks insert WebHook(owner, repository, url, token)
-    events.toSet.map{ event: WebHook.Event =>
+  def addWebHook(owner: String, repository: String, url :String, events: Set[WebHook.Event], ctype: WebHookContentType, token: Option[String])(implicit s: Session): Unit = {
+    WebHooks insert WebHook(owner, repository, url, ctype, token)
+    events.map { event: WebHook.Event =>
       WebHookEvents insert WebHookEvent(owner, repository, url, event)
     }
   }
 
-  def updateWebHook(owner: String, repository: String, url :String, events: Set[WebHook.Event], token: Option[String])(implicit s: Session): Unit = {
-    WebHooks.filter(_.byPrimaryKey(owner, repository, url)).map(w => w.token).update(token)
+  def updateWebHook(owner: String, repository: String, url :String, events: Set[WebHook.Event], ctype: WebHookContentType, token: Option[String])(implicit s: Session): Unit = {
+    WebHooks.filter(_.byPrimaryKey(owner, repository, url)).map(w => (w.ctype, w.token)).update((ctype, token))
     WebHookEvents.filter(_.byWebHook(owner, repository, url)).delete
-    events.toSet.map{ event: WebHook.Event =>
+    events.map { event: WebHook.Event =>
       WebHookEvents insert WebHookEvent(owner, repository, url, event)
     }
   }
@@ -81,7 +84,7 @@ trait WebHookService {
   def callWebHook(event: WebHook.Event, webHooks: List[WebHook], payload: WebHookPayload)
                  (implicit c: JsonFormat.Context): List[(WebHook, String, Future[HttpRequest], Future[HttpResponse])] = {
     import org.apache.http.impl.client.HttpClientBuilder
-    import ExecutionContext.Implicits.global
+    import ExecutionContext.Implicits.global // TODO Shouldn't use the default execution context
     import org.apache.http.protocol.HttpContext
     import org.apache.http.client.methods.HttpPost
 
@@ -91,36 +94,46 @@ trait WebHookService {
       webHooks.map { webHook =>
         val reqPromise = Promise[HttpRequest]
         val f = Future {
-          val itcp = new org.apache.http.HttpRequestInterceptor{
+          val itcp = new org.apache.http.HttpRequestInterceptor {
             def process(res: HttpRequest, ctx: HttpContext): Unit = {
               reqPromise.success(res)
             }
           }
           try{
-            val httpClient = HttpClientBuilder.create.addInterceptorLast(itcp).build
+            val httpClient = HttpClientBuilder.create.useSystemProperties.addInterceptorLast(itcp).build
             logger.debug(s"start web hook invocation for ${webHook.url}")
             val httpPost = new HttpPost(webHook.url)
-            httpPost.addHeader("Content-Type", "application/x-www-form-urlencoded")
+            logger.info(s"Content-Type: ${webHook.ctype.ctype}")
+            httpPost.addHeader("Content-Type", webHook.ctype.ctype)
             httpPost.addHeader("X-Github-Event", event.name)
             httpPost.addHeader("X-Github-Delivery", java.util.UUID.randomUUID().toString)
 
-            val params: java.util.List[NameValuePair] = new java.util.ArrayList()
-            params.add(new BasicNameValuePair("payload", json))
-            def postContent = new UrlEncodedFormEntity(params, "UTF-8")
-            httpPost.setEntity(postContent)
-
-            if (!webHook.token.isEmpty) {
-              // TODO find a better way and see how to extract content from postContent
-              val contentAsBytes = URLEncodedUtils.format(params, "UTF-8").getBytes("UTF-8")
-              httpPost.addHeader("X-Hub-Signature", XHub.generateHeaderXHubToken(XHubConverter.HEXA_LOWERCASE, XHubDigest.SHA1, webHook.token.orNull, contentAsBytes))
+            webHook.ctype match {
+              case WebHookContentType.FORM => {
+            	  val params: java.util.List[NameValuePair] = new java.util.ArrayList()
+                params.add(new BasicNameValuePair("payload", json))
+                def postContent = new UrlEncodedFormEntity(params, "UTF-8")
+                httpPost.setEntity(postContent)
+                if (webHook.token.exists(_.trim.nonEmpty)) {
+                  // TODO find a better way and see how to extract content from postContent
+                  val contentAsBytes = URLEncodedUtils.format(params, "UTF-8").getBytes("UTF-8")
+                  httpPost.addHeader("X-Hub-Signature", XHub.generateHeaderXHubToken(XHubConverter.HEXA_LOWERCASE, XHubDigest.SHA1, webHook.token.get, contentAsBytes))
+                }
+              }
+              case WebHookContentType.JSON => {
+            	  httpPost.setEntity(EntityBuilder.create().setContentType(ContentType.APPLICATION_JSON).setText(json).build())
+                if (webHook.token.exists(_.trim.nonEmpty)) {
+                  httpPost.addHeader("X-Hub-Signature", XHub.generateHeaderXHubToken(XHubConverter.HEXA_LOWERCASE, XHubDigest.SHA1, webHook.token.orNull, json.getBytes("UTF-8")))
+                }
+              }
             }
 
             val res = httpClient.execute(httpPost)
             httpPost.releaseConnection()
             logger.debug(s"end web hook invocation for ${webHook}")
             res
-          }catch{
-            case e:Throwable => {
+          } catch {
+            case e: Throwable => {
               if(!reqPromise.isCompleted){
                 reqPromise.failure(e)
               }
@@ -158,11 +171,11 @@ trait WebHookPullRequestService extends WebHookService {
         issueUser <- users.get(issue.openedUserName)
       } yield {
         WebHookIssuesPayload(
-          action       = action,
-          number       = issue.issueId,
-          repository   = ApiRepository(repository, ApiUser(repoOwner)),
-          issue        = ApiIssue(issue, RepositoryName(repository), ApiUser(issueUser)),
-          sender       = ApiUser(sender))
+          action     = action,
+          number     = issue.issueId,
+          repository = ApiRepository(repository, ApiUser(repoOwner)),
+          issue      = ApiIssue(issue, RepositoryName(repository), ApiUser(issueUser)),
+          sender     = ApiUser(sender))
       }
     }
   }
@@ -188,7 +201,9 @@ trait WebHookPullRequestService extends WebHookService {
           headOwner      = headOwner,
           baseRepository = repository,
           baseOwner      = baseOwner,
-          sender         = sender)
+          sender         = sender,
+          mergedComment  = getMergedComment(repository.owner, repository.name, issueId)
+        )
       }
     }
   }
@@ -227,7 +242,10 @@ trait WebHookPullRequestService extends WebHookService {
         headOwner      = headOwner,
         baseRepository = baseRepo,
         baseOwner      = baseOwner,
-        sender         = sender)
+        sender         = sender,
+        mergedComment  = getMergedComment(baseRepo.owner, baseRepo.name, issue.issueId)
+      )
+
       callWebHook(WebHook.PullRequest, webHooks, payload)
     }
   }
@@ -257,7 +275,9 @@ trait WebHookPullRequestReviewCommentService extends WebHookService {
           headOwner      = headOwner,
           baseRepository = repository,
           baseOwner      = baseOwner,
-          sender         = sender)
+          sender         = sender,
+          mergedComment  = getMergedComment(repository.owner, repository.name, issue.issueId)
+        )
       }
     }
   }
@@ -355,11 +375,21 @@ object WebHookService {
         headOwner: Account,
         baseRepository: RepositoryInfo,
         baseOwner: Account,
-        sender: Account): WebHookPullRequestPayload = {
+        sender: Account,
+        mergedComment: Option[(IssueComment, Account)]): WebHookPullRequestPayload = {
+
       val headRepoPayload = ApiRepository(headRepository, headOwner)
       val baseRepoPayload = ApiRepository(baseRepository, baseOwner)
       val senderPayload = ApiUser(sender)
-      val pr = ApiPullRequest(issue, pullRequest, headRepoPayload, baseRepoPayload, ApiUser(issueUser))
+      val pr = ApiPullRequest(
+        issue         = issue,
+        pullRequest   = pullRequest,
+        headRepo      = headRepoPayload,
+        baseRepo      = baseRepoPayload,
+        user          = ApiUser(issueUser),
+        mergedComment = mergedComment
+      )
+
       WebHookPullRequestPayload(
         action       = action,
         number       = issue.issueId,
@@ -379,7 +409,7 @@ object WebHookService {
     sender: ApiUser
   ) extends WebHookPayload
 
-  object WebHookIssueCommentPayload{
+  object WebHookIssueCommentPayload {
     def apply(
         issue: Issue,
         issueUser: Account,
@@ -405,28 +435,42 @@ object WebHookService {
     sender: ApiUser
   ) extends WebHookPayload
 
-  object WebHookPullRequestReviewCommentPayload{
+  object WebHookPullRequestReviewCommentPayload {
     def apply(
-        action: String,
-        comment: CommitComment,
-        issue: Issue,
-        issueUser: Account,
-        pullRequest: PullRequest,
-        headRepository: RepositoryInfo,
-        headOwner: Account,
-        baseRepository: RepositoryInfo,
-        baseOwner: Account,
-        sender: Account
-      ) : WebHookPullRequestReviewCommentPayload = {
+      action: String,
+      comment: CommitComment,
+      issue: Issue,
+      issueUser: Account,
+      pullRequest: PullRequest,
+      headRepository: RepositoryInfo,
+      headOwner: Account,
+      baseRepository: RepositoryInfo,
+      baseOwner: Account,
+      sender: Account,
+      mergedComment: Option[(IssueComment, Account)]
+    ) : WebHookPullRequestReviewCommentPayload = {
       val headRepoPayload = ApiRepository(headRepository, headOwner)
       val baseRepoPayload = ApiRepository(baseRepository, baseOwner)
       val senderPayload = ApiUser(sender)
+
       WebHookPullRequestReviewCommentPayload(
-        action = action,
-        comment = ApiPullRequestReviewComment(comment, senderPayload, RepositoryName(baseRepository), issue.issueId),
-        pull_request = ApiPullRequest(issue, pullRequest, headRepoPayload, baseRepoPayload, ApiUser(issueUser)),
-        repository = baseRepoPayload,
-        sender = senderPayload)
+        action       = action,
+        comment      = ApiPullRequestReviewComment(
+          comment        = comment,
+          commentedUser  = senderPayload,
+          repositoryName = RepositoryName(baseRepository),
+          issueId        = issue.issueId
+        ),
+        pull_request = ApiPullRequest(
+          issue         = issue,
+          pullRequest   = pullRequest,
+          headRepo      = headRepoPayload,
+          baseRepo      = baseRepoPayload,
+          user          = ApiUser(issueUser),
+          mergedComment = mergedComment
+        ),
+        repository   = baseRepoPayload,
+        sender       = senderPayload)
     }
   }
 }

src/main/scala/gitbucket/core/servlet/ApiAuthenticationFilter.scala

@@ -4,15 +4,14 @@ import javax.servlet._
 import javax.servlet.http.{HttpServletRequest, HttpServletResponse}
 
 import gitbucket.core.model.Account
-import gitbucket.core.service.AccessTokenService
-import gitbucket.core.util.Keys
-
+import gitbucket.core.service.SystemSettingsService.SystemSettings
+import gitbucket.core.service.{AccessTokenService, AccountService, SystemSettingsService}
+import gitbucket.core.util.{AuthUtil, Keys}
 import org.scalatra.servlet.ServletApiImplicits._
 import org.scalatra._
 
 
-class AccessTokenAuthenticationFilter extends Filter with AccessTokenService {
-  private val tokenHeaderPrefix = "token "
+class ApiAuthenticationFilter extends Filter with AccessTokenService with AccountService with SystemSettingsService {
 
   override def init(filterConfig: FilterConfig): Unit = {}
 
@@ -23,9 +22,9 @@ class AccessTokenAuthenticationFilter extends Filter with AccessTokenService {
     implicit val session = req.getAttribute(Keys.Request.DBSession).asInstanceOf[slick.jdbc.JdbcBackend#Session]
     val response = res.asInstanceOf[HttpServletResponse]
     Option(request.getHeader("Authorization")).map{
-      case auth if auth.startsWith("token ") => AccessTokenService.getAccountByAccessToken(auth.substring(6).trim).toRight(Unit)
-      // TODO Basic Authentication Support
-      case _ => Left(Unit)
+      case auth if auth.startsWith("token ") => AccessTokenService.getAccountByAccessToken(auth.substring(6).trim).toRight(())
+      case auth if auth.startsWith("Basic ") => doBasicAuth(auth, loadSystemSettings(), request).toRight(())
+      case _ => Left(())
     }.orElse{
       Option(request.getSession.getAttribute(Keys.Session.LoginAccount).asInstanceOf[Account]).map(Right(_))
     } match {
@@ -40,4 +39,10 @@ class AccessTokenAuthenticationFilter extends Filter with AccessTokenService {
       }
     }
   }
+
+  def doBasicAuth(auth: String, settings: SystemSettings, request: HttpServletRequest): Option[Account] = {
+    implicit val session = request.getAttribute(Keys.Request.DBSession).asInstanceOf[slick.jdbc.JdbcBackend#Session]
+    val Array(username, password) = AuthUtil.decodeAuthHeader(auth).split(":", 2)
+    authenticate(settings, username, password)
+  }
 }

src/main/scala/gitbucket/core/servlet/AutoUpdate.scala

@@ -1,186 +0,0 @@
-package gitbucket.core.servlet
-
-import java.io.File
-import java.sql.{DriverManager, Connection}
-import gitbucket.core.plugin.PluginRegistry
-import gitbucket.core.service.SystemSettingsService
-import gitbucket.core.util._
-import org.apache.commons.io.FileUtils
-import javax.servlet.{ServletContextListener, ServletContextEvent}
-import org.slf4j.LoggerFactory
-import Directory._
-import ControlUtil._
-import JDBCUtil._
-import org.eclipse.jgit.api.Git
-import gitbucket.core.util.Versions
-import gitbucket.core.util.Directory
-
-object AutoUpdate {
-
-  /**
-   * The history of versions. A head of this sequence is the current GitBucket version.
-   */
-  val versions = Seq(
-    new Version(3, 13),
-    new Version(3, 12),
-    new Version(3, 11),
-    new Version(3, 10),
-    new Version(3, 9),
-    new Version(3, 8),
-    new Version(3, 7) with SystemSettingsService {
-      override def update(conn: Connection, cl: ClassLoader): Unit = {
-        super.update(conn, cl)
-        val settings = loadSystemSettings()
-        if(settings.notification){
-          saveSystemSettings(settings.copy(useSMTP = true))
-        }
-      }
-    },
-    new Version(3, 6),
-    new Version(3, 5),
-    new Version(3, 4),
-    new Version(3, 3),
-    new Version(3, 2),
-    new Version(3, 1),
-    new Version(3, 0),
-    new Version(2, 8),
-    new Version(2, 7) {
-      override def update(conn: Connection, cl: ClassLoader): Unit = {
-        super.update(conn, cl)
-        conn.select("SELECT * FROM REPOSITORY"){ rs =>
-          // Rename attached files directory from /issues to /comments
-          val userName = rs.getString("USER_NAME")
-          val repoName = rs.getString("REPOSITORY_NAME")
-          defining(Directory.getAttachedDir(userName, repoName)){ newDir =>
-            val oldDir = new File(newDir.getParentFile, "issues")
-            if(oldDir.exists && oldDir.isDirectory){
-              oldDir.renameTo(newDir)
-            }
-          }
-          // Update ORIGIN_USER_NAME and ORIGIN_REPOSITORY_NAME if it does not exist
-          val originalUserName = rs.getString("ORIGIN_USER_NAME")
-          val originalRepoName = rs.getString("ORIGIN_REPOSITORY_NAME")
-          if(originalUserName != null && originalRepoName != null){
-            if(conn.selectInt("SELECT COUNT(*) FROM REPOSITORY WHERE USER_NAME = ? AND REPOSITORY_NAME = ?",
-              originalUserName, originalRepoName) == 0){
-              conn.update("UPDATE REPOSITORY SET ORIGIN_USER_NAME = NULL, ORIGIN_REPOSITORY_NAME = NULL " +
-                "WHERE USER_NAME = ? AND REPOSITORY_NAME = ?", userName, repoName)
-            }
-          }
-          // Update PARENT_USER_NAME and PARENT_REPOSITORY_NAME if it does not exist
-          val parentUserName = rs.getString("PARENT_USER_NAME")
-          val parentRepoName = rs.getString("PARENT_REPOSITORY_NAME")
-          if(parentUserName != null && parentRepoName != null){
-            if(conn.selectInt("SELECT COUNT(*) FROM REPOSITORY WHERE USER_NAME = ? AND REPOSITORY_NAME = ?",
-              parentUserName, parentRepoName) == 0){
-              conn.update("UPDATE REPOSITORY SET PARENT_USER_NAME = NULL, PARENT_REPOSITORY_NAME = NULL " +
-                "WHERE USER_NAME = ? AND REPOSITORY_NAME = ?", userName, repoName)
-            }
-          }
-        }
-      }
-    },
-    new Version(2, 6),
-    new Version(2, 5),
-    new Version(2, 4),
-    new Version(2, 3) {
-      override def update(conn: Connection, cl: ClassLoader): Unit = {
-        super.update(conn, cl)
-        conn.select("SELECT ACTIVITY_ID, ADDITIONAL_INFO FROM ACTIVITY WHERE ACTIVITY_TYPE='push'"){ rs =>
-          val curInfo = rs.getString("ADDITIONAL_INFO")
-          val newInfo = curInfo.split("\n").filter(_ matches "^[0-9a-z]{40}:.*").mkString("\n")
-          if (curInfo != newInfo) {
-            conn.update("UPDATE ACTIVITY SET ADDITIONAL_INFO = ? WHERE ACTIVITY_ID = ?", newInfo, rs.getInt("ACTIVITY_ID"))
-          }
-        }
-        ignore {
-          FileUtils.deleteDirectory(Directory.getPluginCacheDir())
-          //FileUtils.deleteDirectory(new File(Directory.PluginHome))
-        }
-      }
-    },
-    new Version(2, 2),
-    new Version(2, 1),
-    new Version(2, 0){
-      override def update(conn: Connection, cl: ClassLoader): Unit = {
-        import eu.medsea.mimeutil.{MimeUtil2, MimeType}
-
-        val mimeUtil = new MimeUtil2()
-        mimeUtil.registerMimeDetector("eu.medsea.mimeutil.detector.MagicMimeMimeDetector")
-
-        super.update(conn, cl)
-        conn.select("SELECT USER_NAME, REPOSITORY_NAME FROM REPOSITORY"){ rs =>
-          defining(Directory.getAttachedDir(rs.getString("USER_NAME"), rs.getString("REPOSITORY_NAME"))){ dir =>
-            if(dir.exists && dir.isDirectory){
-              dir.listFiles.foreach { file =>
-                if(file.getName.indexOf('.') < 0){
-                  val mimeType = MimeUtil2.getMostSpecificMimeType(mimeUtil.getMimeTypes(file, new MimeType("application/octet-stream"))).toString
-                  if(mimeType.startsWith("image/")){
-                    file.renameTo(new File(file.getParent, file.getName + "." + mimeType.split("/")(1)))
-                  }
-                }
-              }
-            }
-          }
-        }
-      }
-    },
-    Version(1, 13),
-    Version(1, 12),
-    Version(1, 11),
-    Version(1, 10),
-    Version(1, 9),
-    Version(1, 8),
-    Version(1, 7),
-    Version(1, 6),
-    Version(1, 5),
-    Version(1, 4),
-    new Version(1, 3){
-      override def update(conn: Connection, cl: ClassLoader): Unit = {
-        super.update(conn, cl)
-        // Fix wiki repository configuration
-        conn.select("SELECT USER_NAME, REPOSITORY_NAME FROM REPOSITORY"){ rs =>
-          using(Git.open(getWikiRepositoryDir(rs.getString("USER_NAME"), rs.getString("REPOSITORY_NAME")))){ git =>
-            defining(git.getRepository.getConfig){ config =>
-              if(!config.getBoolean("http", "receivepack", false)){
-                config.setBoolean("http", null, "receivepack", true)
-                config.save
-              }
-            }
-          }
-        }
-      }
-    },
-    Version(1, 2),
-    Version(1, 1),
-    Version(1, 0),
-    Version(0, 0)
-  )
-
-  /**
-   * The head version of GitBucket.
-   */
-  val headVersion = versions.head
-
-  /**
-   * The version file (GITBUCKET_HOME/version).
-   */
-  lazy val versionFile = new File(GitBucketHome, "version")
-
-  /**
-   * Returns the current version from the version file.
-   */
-  def getCurrentVersion(): Version = {
-    if(versionFile.exists){
-      FileUtils.readFileToString(versionFile, "UTF-8").trim.split("\\.") match {
-        case Array(majorVersion, minorVersion) => {
-          versions.find { v =>
-            v.majorVersion == majorVersion.toInt && v.minorVersion == minorVersion.toInt
-          }.getOrElse(Version(0, 0))
-        }
-        case _ => Version(0, 0)
-      }
-    } else Version(0, 0)
-  }
-
-}

src/main/scala/gitbucket/core/servlet/GHCompatRepositoryAccessFilter.scala

@@ -0,0 +1,36 @@
+package gitbucket.core.servlet
+
+import javax.servlet._
+import javax.servlet.http.{HttpServletRequest, HttpServletResponse}
+
+import gitbucket.core.service.SystemSettingsService
+
+/**
+  * A controller to provide GitHub compatible URL for Git clients.
+  */
+class GHCompatRepositoryAccessFilter extends Filter with SystemSettingsService {
+
+  /**
+    * Pattern of GitHub compatible repository URL.
+    * <code>/:user/:repo.git/</code>
+    */
+  private val githubRepositoryPattern = """^/[^/]+/[^/]+\.git/.*""".r
+
+  override def init(filterConfig: FilterConfig) = {}
+
+  override def doFilter(req: ServletRequest, res: ServletResponse, chain: FilterChain) = {
+    implicit val request  = req.asInstanceOf[HttpServletRequest]
+    val response = res.asInstanceOf[HttpServletResponse]
+    val requestPath = request.getRequestURI.substring(request.getContextPath.length)
+    requestPath match {
+      case githubRepositoryPattern() =>
+        response.sendRedirect(baseUrl + "/git" + requestPath)
+
+      case _ =>
+        chain.doFilter(req, res)
+    }
+  }
+
+  override def destroy() = {}
+
+}

src/main/scala/gitbucket/core/servlet/GitAuthenticationFilter.scala

@@ -5,16 +5,16 @@ import javax.servlet.http._
 import gitbucket.core.plugin.{GitRepositoryFilter, GitRepositoryRouting, PluginRegistry}
 import gitbucket.core.service.SystemSettingsService.SystemSettings
 import gitbucket.core.service.{RepositoryService, AccountService, SystemSettingsService}
-import gitbucket.core.util.{Keys, Implicits}
+import gitbucket.core.util.{Keys, Implicits, AuthUtil}
 import org.slf4j.LoggerFactory
 import Implicits._
 
 /**
  * Provides BASIC Authentication for [[GitRepositoryServlet]].
  */
-class BasicAuthenticationFilter extends Filter with RepositoryService with AccountService with SystemSettingsService {
+class GitAuthenticationFilter extends Filter with RepositoryService with AccountService with SystemSettingsService {
 
-  private val logger = LoggerFactory.getLogger(classOf[BasicAuthenticationFilter])
+  private val logger = LoggerFactory.getLogger(classOf[GitAuthenticationFilter])
 
   def init(config: FilterConfig) = {}
   
@@ -43,7 +43,7 @@ class BasicAuthenticationFilter extends Filter with RepositoryService with Accou
     } catch {
       case ex: Exception => {
         logger.error("error", ex)
-        requireAuth(response)
+        AuthUtil.requireAuth(response)
       }
     }
   }
@@ -54,7 +54,7 @@ class BasicAuthenticationFilter extends Filter with RepositoryService with Accou
 
     val account = for {
       auth <- Option(request.getHeader("Authorization"))
-      Array(username, password) = decodeAuthHeader(auth).split(":", 2)
+      Array(username, password) = AuthUtil.decodeAuthHeader(auth).split(":", 2)
       account <- authenticate(settings, username, password)
     } yield {
       request.setAttribute(Keys.Request.UserName, account.userName)
@@ -64,7 +64,7 @@ class BasicAuthenticationFilter extends Filter with RepositoryService with Accou
     if(filter.filter(request.gitRepositoryPath, account.map(_.userName), settings, isUpdating)){
       chain.doFilter(request, response)
     } else {
-      requireAuth(response)
+      AuthUtil.requireAuth(response)
     }
   }
 
@@ -81,10 +81,10 @@ class BasicAuthenticationFilter extends Filter with RepositoryService with Accou
             } else {
               val passed = for {
                 auth <- Option(request.getHeader("Authorization"))
-                Array(username, password) = decodeAuthHeader(auth).split(":", 2)
+                Array(username, password) = AuthUtil.decodeAuthHeader(auth).split(":", 2)
                 account <- authenticate(settings, username, password)
               } yield if(isUpdating || repository.repository.isPrivate){
-                  if(hasWritePermission(repository.owner, repository.name, Some(account))){
+                  if(hasDeveloperRole(repository.owner, repository.name, Some(account))){
                     request.setAttribute(Keys.Request.UserName, account.userName)
                     true
                   } else false
@@ -93,7 +93,7 @@ class BasicAuthenticationFilter extends Filter with RepositoryService with Accou
               if(passed.getOrElse(false)){
                 chain.doFilter(request, response)
               } else {
-                requireAuth(response)
+                AuthUtil.requireAuth(response)
               }
             }
           }
@@ -108,17 +108,4 @@ class BasicAuthenticationFilter extends Filter with RepositoryService with Accou
       }
     }
   }
-
-  private def requireAuth(response: HttpServletResponse): Unit = {
-    response.setHeader("WWW-Authenticate", "BASIC realm=\"GitBucket\"")
-    response.sendError(HttpServletResponse.SC_UNAUTHORIZED)
-  }
-  
-  private def decodeAuthHeader(header: String): String = {
-    try {
-      new String(new sun.misc.BASE64Decoder().decodeBuffer(header.substring(6)))
-    } catch {
-      case _: Throwable => ""
-    }
-  }
 }

src/main/scala/gitbucket/core/servlet/GitRepositoryServlet.scala

@@ -27,7 +27,7 @@ import javax.servlet.http.{HttpServletResponse, HttpServletRequest}
  * Provides Git repository via HTTP.
  * 
  * This servlet provides only Git repository functionality.
- * Authentication is provided by [[BasicAuthenticationFilter]].
+ * Authentication is provided by [[GitAuthenticationFilter]].
  */
 class GitRepositoryServlet extends GitServlet with SystemSettingsService {
 
@@ -110,7 +110,7 @@ import scala.collection.JavaConverters._
 class CommitLogHook(owner: String, repository: String, pusher: String, baseUrl: String)(implicit session: Session)
   extends PostReceiveHook with PreReceiveHook
   with RepositoryService with AccountService with IssuesService with ActivityService with PullRequestService with WebHookService
-  with WebHookPullRequestService with ProtectedBranchService {
+  with WebHookPullRequestService with CommitsService {
   
   private val logger = LoggerFactory.getLogger(classOf[CommitLogHook])
   private var existIds: Seq[String] = Nil
@@ -139,6 +139,8 @@ class CommitLogHook(owner: String, repository: String, pusher: String, baseUrl:
   def onPostReceive(receivePack: ReceivePack, commands: java.util.Collection[ReceiveCommand]): Unit = {
     try {
       using(Git.open(Directory.getRepositoryDir(owner, repository))) { git =>
+        JGitUtil.removeCache(git)
+
         val pushedIds = scala.collection.mutable.Set[String]()
         commands.asScala.foreach { command =>
           logger.debug(s"commandType: ${command.getType}, refName: ${command.getRefName}")

src/main/scala/gitbucket/core/servlet/InitializeListener.scala

@@ -1,16 +1,23 @@
 package gitbucket.core.servlet
 
+import java.io.File
+
 import akka.event.Logging
 import com.typesafe.config.ConfigFactory
+import gitbucket.core.GitBucketCoreModule
 import gitbucket.core.plugin.PluginRegistry
 import gitbucket.core.service.{ActivityService, SystemSettingsService}
-import org.apache.commons.io.FileUtils
+import gitbucket.core.util.DatabaseConfig
+import gitbucket.core.util.Directory._
+import gitbucket.core.util.JDBCUtil._
+import io.github.gitbucket.solidbase.Solidbase
+import io.github.gitbucket.solidbase.manager.JDBCVersionManager
 import javax.servlet.{ServletContextListener, ServletContextEvent}
+import org.apache.commons.io.FileUtils
 import org.slf4j.LoggerFactory
-import gitbucket.core.util.Versions
 import akka.actor.{Actor, Props, ActorSystem}
 import com.typesafe.akka.extension.quartz.QuartzSchedulerExtension
-import AutoUpdate._
+import scala.collection.JavaConverters._
 
 /**
  * Initialize GitBucket system.
@@ -29,15 +36,63 @@ class InitializeListener extends ServletContextListener with SystemSettingsServi
 
     Database() withTransaction { session =>
       val conn = session.conn
+      val manager = new JDBCVersionManager(conn)
 
-      // Migration
-      logger.debug("Start schema update")
-      Versions.update(conn, headVersion, getCurrentVersion(), versions, Thread.currentThread.getContextClassLoader){ conn =>
-        FileUtils.writeStringToFile(versionFile, headVersion.versionString, "UTF-8")
+      // Check version
+      val versionFile = new File(GitBucketHome, "version")
+
+      if(versionFile.exists()){
+        val version = FileUtils.readFileToString(versionFile, "UTF-8")
+        if(version == "3.14"){
+          // Initialization for GitBucket 3.14
+          logger.info("Migration to GitBucket 4.x start")
+
+          // Backup current data
+          val dataMvFile = new File(GitBucketHome, "data.mv.db")
+          if(dataMvFile.exists) {
+            FileUtils.copyFile(dataMvFile, new File(GitBucketHome, "data.mv.db_3.14"))
+          }
+          val dataTraceFile = new File(GitBucketHome, "data.trace.db")
+          if(dataTraceFile.exists) {
+            FileUtils.copyFile(dataTraceFile, new File(GitBucketHome, "data.trace.db_3.14"))
+          }
+
+          // Change form
+          manager.initialize()
+          manager.updateVersion(GitBucketCoreModule.getModuleId, "4.0.0")
+          conn.select("SELECT PLUGIN_ID, VERSION FROM PLUGIN"){ rs =>
+            manager.updateVersion(rs.getString("PLUGIN_ID"), rs.getString("VERSION"))
+          }
+          conn.update("DROP TABLE PLUGIN")
+          versionFile.delete()
+
+          logger.info("Migration to GitBucket 4.x completed")
+
+        } else {
+          throw new Exception("GitBucket can't migrate from this version. Please update to 3.14 at first.")
+        }
+      }
+
+      // Run normal migration
+      logger.info("Start schema update")
+      val solidbase = new Solidbase()
+      solidbase.migrate(conn, Thread.currentThread.getContextClassLoader, DatabaseConfig.liquiDriver, GitBucketCoreModule)
+
+      // Rescue code for users who updated from 3.14 to 4.0.0
+      // https://github.com/gitbucket/gitbucket/issues/1227
+      val currentVersion = manager.getCurrentVersion(GitBucketCoreModule.getModuleId)
+      val databaseVersion = if(currentVersion == "4.0"){
+        manager.updateVersion(GitBucketCoreModule.getModuleId, "4.0.0")
+        "4.0.0"
+      } else currentVersion
+
+      val gitbucketVersion = GitBucketCoreModule.getVersions.asScala.last.getVersion
+      if(databaseVersion != gitbucketVersion){
+        throw new IllegalStateException(s"Initialization failed. GitBucket version is ${gitbucketVersion}, but database version is ${databaseVersion}.")
       }
 
       // Load plugins
-      logger.debug("Initialize plugins")
+      logger.info("Initialize plugins")
       PluginRegistry.initialize(event.getServletContext, loadSystemSettings(), conn)
     }
 

src/main/scala/gitbucket/core/servlet/PluginAssetsServlet.scala

@@ -0,0 +1,39 @@
+package gitbucket.core.servlet
+
+import javax.servlet.http.{HttpServlet, HttpServletRequest, HttpServletResponse}
+
+import gitbucket.core.plugin.PluginRegistry
+import gitbucket.core.util.FileUtil
+import org.apache.commons.io.IOUtils
+
+/**
+ * Supply assets which are provided by plugins.
+ */
+class PluginAssetsServlet extends HttpServlet {
+
+  override def doGet(req: HttpServletRequest, resp: HttpServletResponse): Unit = {
+    val assetsMappings = PluginRegistry().getAssetsMappings
+    val path = req.getRequestURI.substring(req.getContextPath.length)
+
+    assetsMappings
+      .find    { case (prefix, _, _) => path.startsWith("/plugin-assets" + prefix) }
+      .flatMap { case (prefix, resourcePath, classLoader) =>
+        val resourceName = path.substring(("/plugin-assets" + prefix).length)
+        Option(classLoader.getResourceAsStream(resourcePath.replaceFirst("^/", "") + resourceName))
+      }
+      .map { in =>
+        try {
+          val bytes = IOUtils.toByteArray(in)
+          resp.setContentLength(bytes.length)
+          resp.setContentType(FileUtil.getContentType(path, bytes))
+          resp.getOutputStream.write(bytes)
+        } finally {
+          in.close()
+        }
+      }
+      .getOrElse {
+        resp.setStatus(404)
+      }
+  }
+
+}