Merge pull request #2138 from gitbucket/gitbucket-4.28.0

GitBucket 4.28.0 release

CHANGELOG.md

@@ -1,6 +1,43 @@
 # Changelog
 All changes to the project will be documented in this file.
 
+### 4.28.0 - 1 Sep 2018
+- Proxy support for plugin installation
+- Fix some bugs around pull requests
+
+### 4.27.0 - 29 Jul 2018
+- Create new tag on the browser
+- EditorConfig support
+- Improve issues / pull requests search
+- Some improvements and bug fixes for plugin installation via internet and pull request commenting
+
+### 4.26.0 - 30 Jun 2018
+- Installing plugins from the central registry
+- Repositories tab in the dashboard
+- Fork dialog enhancement
+- Adjust pull request creation suggestor
+- Keep showing incompleted task list
+- New notification hooks
+
+### 4.25.0 - 29 May 2018
+- Security improvements
+- Show mail address at the profile page
+- Task list on commit comments
+- More detailed editing history of issues and pull requests
+- Expose user public keys
+- Download repository improvements
+
+### 4.24.1 - 1 May 2018
+- Fix bug in Web API authentication
+
+### 4.24.0 - 30 Apr 2018
+- Diff for each review comment on pull requests
+- Extra mail addresses support
+- Show tags at the commit list
+- Keep wrap mode of the online editor
+- Renew layout of gitbucket-gist-plugin
+- Web API of gitbucket-ci-plugin
+
 ### 4.23.1 - 10 Apr 2018
 - Fix bug that the contents API doesn't work for the repository root
 - Fix shutdown problem in Tomcat deployment

README.md

@@ -1,4 +1,4 @@
-GitBucket [![Gitter chat](https://badges.gitter.im/gitbucket/gitbucket.svg)](https://gitter.im/gitbucket/gitbucket) [![Build Status](https://travis-ci.org/gitbucket/gitbucket.svg?branch=master)](https://travis-ci.org/gitbucket/gitbucket)
+GitBucket [![Gitter chat](https://badges.gitter.im/gitbucket/gitbucket.svg)](https://gitter.im/gitbucket/gitbucket) [![Build Status](https://travis-ci.org/gitbucket/gitbucket.svg?branch=master)](https://travis-ci.org/gitbucket/gitbucket) [![Maven Central](https://img.shields.io/maven-central/v/io.github.gitbucket/gitbucket_2.12.svg)](https://maven-badges.herokuapp.com/maven-central/io.github.gitbucket/gitbucket_2.12) [![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://github.com/gitbucket/gitbucket/blob/master/LICENSE)
 =========
 
 GitBucket is a Git web platform powered by Scala offering:
@@ -68,19 +68,11 @@ Support
 - If you can't find same question and report, send it to [gitter room](https://gitter.im/gitbucket/gitbucket) before raising an issue.
 - The highest priority of GitBucket is the ease of installation and API compatibility with GitHub, so your feature request might be rejected if they go against those principles.
 
-What's New in 4.23.x
+What's New in 4.27.x
 -------------
-### 4.23.1 - 10 Apr 2018
-- Fix bug that the contents API doesn't work for the repository root
-- Fix shutdown problem in Tomcat deployment
-- Render by plugins at the blob view even if it's a binary file
+### 4.28.0 - 1 Sep 2018
+- Proxy support for plugin installation
+- Fix some bugs around pull requests
 
-### 4.23.0 - 31 Mar 2018
-- Allow tail slash in URL
-- Display commit message of tags at the releases page
-- Add labels property to issues and pull requests API response
-- Plugins list API
-- Git authentication with personal access token
-- Max parallel builds and max stored history in CI plugin became configurable
 
 See the [change log](CHANGELOG.md) for all of the updates.

build.sbt

@@ -3,12 +3,13 @@ import com.typesafe.sbt.pgp.PgpKeys._
 
 val Organization = "io.github.gitbucket"
 val Name = "gitbucket"
-val GitBucketVersion = "4.23.1"
-val ScalatraVersion = "2.6.1"
-val JettyVersion = "9.4.7.v20170914"
+val GitBucketVersion = "4.28.0"
+val ScalatraVersion = "2.6.3"
+val JettyVersion = "9.4.11.v20180605"
+val JgitVersion = "5.0.1.201806211838-r"
 
 lazy val root = (project in file("."))
-  .enablePlugins(SbtTwirl, ScalatraPlugin, JRebelPlugin)
+  .enablePlugins(SbtTwirl, ScalatraPlugin)
   .settings(
     )
 
@@ -16,7 +17,7 @@ sourcesInBase := false
 organization := Organization
 name := Name
 version := GitBucketVersion
-scalaVersion := "2.12.5"
+scalaVersion := "2.12.6"
 
 scalafmtOnCompile := true
 
@@ -30,8 +31,8 @@ resolvers ++= Seq(
 )
 
 libraryDependencies ++= Seq(
-  "org.eclipse.jgit"                % "org.eclipse.jgit.http.server" % "4.11.0.201803080745-r",
-  "org.eclipse.jgit"                % "org.eclipse.jgit.archive"     % "4.11.0.201803080745-r",
+  "org.eclipse.jgit"                % "org.eclipse.jgit.http.server" % JgitVersion,
+  "org.eclipse.jgit"                % "org.eclipse.jgit.archive"     % JgitVersion,
   "org.scalatra"                    %% "scalatra"                    % ScalatraVersion,
   "org.scalatra"                    %% "scalatra-json"               % ScalatraVersion,
   "org.scalatra"                    %% "scalatra-forms"              % ScalatraVersion,
@@ -47,8 +48,8 @@ libraryDependencies ++= Seq(
   "com.github.takezoe"              %% "blocking-slick-32"           % "0.0.10",
   "com.novell.ldap"                 % "jldap"                        % "2009-10-07",
   "com.h2database"                  % "h2"                           % "1.4.196",
-  "org.mariadb.jdbc"                % "mariadb-java-client"          % "2.2.3",
-  "org.postgresql"                  % "postgresql"                   % "42.1.4",
+  "org.mariadb.jdbc"                % "mariadb-java-client"          % "2.2.6",
+  "org.postgresql"                  % "postgresql"                   % "42.2.4",
   "ch.qos.logback"                  % "logback-classic"              % "1.2.3",
   "com.zaxxer"                      % "HikariCP"                     % "2.7.4",
   "com.typesafe"                    % "config"                       % "1.3.2",
@@ -68,7 +69,8 @@ libraryDependencies ++= Seq(
   "com.wix"                         % "wix-embedded-mysql"           % "3.0.0" % "test",
   "ru.yandex.qatools.embed"         % "postgresql-embedded"          % "2.6" % "test",
   "net.i2p.crypto"                  % "eddsa"                        % "0.2.0",
-  "is.tagomor.woothee"              % "woothee-java"                 % "1.7.0"
+  "is.tagomor.woothee"              % "woothee-java"                 % "1.7.0",
+  "org.ec4j.core"                   % "ec4j-core"                    % "0.0.1"
 )
 
 // Compiler settings
@@ -96,21 +98,6 @@ assemblyMergeStrategy in assembly := {
   case x => MergeStrategy.first
 }
 
-// JRebel
-//Seq(jrebelSettings: _*)
-
-//jrebel.webLinks += (target in webappPrepare).value
-//jrebel.enabled := System.getenv().get("JREBEL") != null
-javaOptions in Jetty ++= Option(System.getenv().get("JREBEL")).toSeq.flatMap { path =>
-  if (path.endsWith(".jar")) {
-    // Legacy JRebel agent
-    Seq("-noverify", "-XX:+UseConcMarkSweepGC", "-XX:+CMSClassUnloadingEnabled", s"-javaagent:${path}")
-  } else {
-    // New JRebel agent
-    Seq(s"-agentpath:${path}")
-  }
-}
-
 // Exclude a war file from published artifacts
 signedArtifacts := {
   signedArtifacts.value.filterNot {
@@ -170,12 +157,17 @@ executableKey := {
   // include plugins
   val pluginsDir = temp / "WEB-INF" / "classes" / "plugins"
   IO createDirectory (pluginsDir)
-  IO copyFile (Keys.baseDirectory.value / "plugins.json", pluginsDir / "plugins.json")
 
-  val json = IO read (Keys.baseDirectory.value / "plugins.json")
-  PluginsJson.getUrls(json).foreach { url =>
-    log info s"Download: ${url}"
-    IO transfer (new java.net.URL(url).openStream, pluginsDir / url.substring(url.lastIndexOf("/") + 1))
+  val plugins = IO readLines (Keys.baseDirectory.value / "src" / "main" / "resources" / "bundle-plugins.txt")
+  plugins.foreach { plugin =>
+    plugin.trim.split(":") match {
+      case Array(pluginId, pluginVersion) =>
+        val url = "https://plugins.gitbucket-community.org/releases/" +
+          s"gitbucket-${pluginId}-plugin/gitbucket-${pluginId}-plugin-gitbucket_${version.value}-${pluginVersion}.jar"
+        log info s"Download: ${url}"
+        IO transfer (new java.net.URL(url).openStream, pluginsDir / url.substring(url.lastIndexOf("/") + 1))
+      case _ => ()
+    }
   }
 
   // zip it up

doc/comment_action.md

@@ -6,22 +6,26 @@ The details are saved at `ISSUE_COMMENT` table.
 To determine if it was any operation, you see the `ACTION` column.
 And in the case of some actions, `CONTENT` column value contains additional information.
 
-|ACTION          |CONTENT               |
-|----------------|----------------------|
-|comment         |comment               |
-|close_comment   |comment               |
-|reopen_comment  |comment               |
-|close           |"Close"               |
-|reopen          |"Reopen"              |
-|commit          |comment commitId      |
-|merge           |comment               |
-|delete_branch   |branchName            |
-|refer           |issueId:title         |
-|add_label       |labelName             |
-|delete_label    |labelName             |
-|change_priority |oldPriority:priority  |
-|change_milestone|oldMilestone:milestone|
-|assign          |oldAssigned:assigned  |
+|ACTION          |CONTENT                   |
+|----------------|--------------------------|
+|comment         |comment                   |
+|close_comment   |comment                   |
+|reopen_comment  |comment                   |
+|close           |"Close"                   |
+|reopen          |"Reopen"                  |
+|commit          |comment commitId          |
+|merge           |comment                   |
+|delete_branch   |branchName                |
+|refer           |issueId:title             |
+|add_label       |labelName                 |
+|delete_label    |labelName                 |
+|change_priority |oldPriority:priority      |
+|change_milestone|oldMilestone:milestone    |
+|assign          |oldAssigned:assigned      |
+|change_title    |oldTitle(CRLF)title \[1\] |
+
+\[1\]: (CRLF) is "\r\n"
+
 
 ### comment
 
@@ -79,3 +83,7 @@ This value is saved when users have changed the milestone.
 ### assign
 
 This value is saved when users have assign issue/PR to user or remove the assign.
+
+### change_title
+
+This value is saved when users have changed the title.

doc/jrebel.md

@@ -1,119 +0,0 @@
-JRebel integration (optional)
-=============================
-
-[JRebel](https://zeroturnaround.com/software/jrebel/) is a JVM plugin that makes developing web apps much faster.
-JRebel is generally able to eliminate the need for the slow "app restart" per modification of codes. Alsp it's only used during development, and doesn't change your deployed app in any way.
-
-JRebel is not open source, but we can use it free for non-commercial use.
-
-----
-
-## 1. Get a JRebel license
-
-Sign up for a [myJRebel](https://my.jrebel.com/register). You will need to create an account.
-
-## 2. Download JRebel
-
-Download the most recent ["nosetup" JRebel zip](https://zeroturnaround.com/software/jrebel/download/prev-releases/).
-Next, unzip the downloaded file.
-
-## 3. Activate
-
-Follow `readme.txt` in the extracted directory to activate your downloaded JRebel.
-
-You don't need to integrate with your IDE, since we're using sbt to do the servlet deployment.
-
-## 4. Tell jvm where JRebel is
-
-Fortunately, the gitbucket project is already set up to use JRebel.
-You only need to tell jvm where to find the jrebel jar.
-
-To do so, edit your shell resource file (usually `~/.bash_profile` on Mac, and `~/.bashrc` on Linux) and set the environment variable `JREBEL`.
-For example, if you unzipped your JRebel download in your home directory, you would use:
-
-```bash
-export JREBEL=~/jrebel/legacy/jrebel.jar      # legacy agent
-export JREBEL=~/jrebel/lib/libjrebel64.dylib  # new agent
-```
-
-You can choose the legacy JRebel agent or the new one.
-See [the document](https://zeroturnaround.com/software/jrebel/jrebel7-agent-upgrade-cli/) for details.
-
-Now reload your shell:
-
-```
-$ source ~/.bash_profile # on Mac
-$ source ~/.bashrc       # on Linux
-```
-
-## 5. See it in action!
-
-Now you're ready to use JRebel with the gitbucket.
-When you run sbt as normal, you will see a long message from JRebel, indicating it has loaded.
-Here's an abbreviated version of what you will see:
-
-```
-$ ./sbt
-[info] Loading project definition from /git/gitbucket/project
-[info] Set current project to gitbucket (in build file:/git/gitbucket/)
->
-```
-
-You will start the servlet container slightly differently now that you're using sbt.
-
-```
-> jetty:quickstart
-:
-2017-09-21 15:46:35 JRebel:
-2017-09-21 15:46:35 JRebel:  #############################################################
-2017-09-21 15:46:35 JRebel:
-2017-09-21 15:46:35 JRebel:  Legacy Agent 7.0.15 (201709080836)
-2017-09-21 15:46:35 JRebel:  (c) Copyright ZeroTurnaround AS, Estonia, Tartu.
-2017-09-21 15:46:35 JRebel:
-2017-09-21 15:46:35 JRebel:  Over the last 2 days JRebel prevented
-2017-09-21 15:46:35 JRebel:  at least 8 redeploys/restarts saving you about 0.3 hours.
-2017-09-21 15:46:35 JRebel:
-2017-09-21 15:46:35 JRebel:  Licensed to Naoki Takezoe (using myJRebel).
-2017-09-21 15:46:35 JRebel:
-2017-09-21 15:46:35 JRebel:
-2017-09-21 15:46:35 JRebel:  #############################################################
-2017-09-21 15:46:35 JRebel:
-:
-
-> ~compile
-[success] Total time: 2 s, completed 2017/09/21 15:50:06
-1. Waiting for source changes... (press enter to interrupt)
-```
-
-Finally, change your code.
-For example, you can change the title on `src/main/twirl/gitbucket/core/main.scala.html` like this:
-
-```html
-:
-  <a href="@context.path/" class="logo">
-    <img src="@helpers.assets("/common/images/gitbucket.svg")" style="width: 24px; height: 24px; display: inline;"/>
-    GitBucket
-    change code !!!!!!!!!!!!!!!!
-    <span class="header-version">@gitbucket.core.GitBucketCoreModule.getVersions.last.getVersion</span>
-  </a>
-:
-```
-
-If JRebel is doing is correctly installed you will see a notice for you:
-
-```
-1. Waiting for source changes... (press enter to interrupt)
-[info] Compiling 1 Scala source to /Users/naoki.takezoe/gitbucket/target/scala-2.12/classes...
-[success] Total time: 1 s, completed 2017/09/21 15:55:40
-```
-
-And you reload browser, JRebel give notice of that it has reloaded classes:
-
-```
-2. Waiting for source changes... (press enter to interrupt)
-2017-09-21 15:55:40 JRebel: Reloading class 'gitbucket.core.html.main$'.
-```
-
-## 6. Limitations
-
-JRebel is nearly always able to eliminate the need to explicitly reload your container after a code change. However, if you change any of your routing patterns, there is nothing JRebel can do, you will have to restart by `jetty:quickstart`.

doc/readme.md

@@ -8,5 +8,4 @@ Developer's Guide
  * [Activity Types](activity.md)
  * [Automatic Schema Updating](auto_update.md)
  * [Release Operation](release.md)
- * [JRebel integration (optional)](jrebel.md)
  * [Licenses](licenses.md)

doc/release.md

@@ -47,7 +47,7 @@ $ sbt executable
 For plug-in development, we have to publish the GitBucket jar file to the Maven central repository as well. At first, hit following command to publish artifacts to the sonatype OSS repository:
 
 ```bash
-$ sbt publish-signed
+$ sbt publishSigned
 ```
 
 Then logged-in https://oss.sonatype.org/ and delete following files from the staging repository:

plugins.json

@@ -1,54 +0,0 @@
-[
-  {
-    "id": "notifications",
-    "name": "Notifications Plugin",
-    "description": "Provides notifications feature on GitBucket.",
-    "versions": [
-      {
-        "version": "1.5.0",
-        "range": ">=4.23.0",
-        "url": "https://github.com/gitbucket/gitbucket-notifications-plugin/releases/download/1.5.0/gitbucket-notifications-plugin-assembly-1.5.0.jar"
-      }
-    ],
-    "default": true
-  },
-  {
-    "id": "emoji",
-    "name": "Emoji Plugin",
-    "description": "Provides Emoji support for GitBucket.",
-    "versions": [
-      {
-        "version": "4.5.0",
-        "range": ">=4.18.0",
-        "url": "https://github.com/gitbucket/gitbucket-emoji-plugin/releases/download/4.5.0/gitbucket-emoji-plugin_2.12-4.5.0.jar"
-      }
-    ],
-    "default": false
-  },
-  {
-    "id": "gist",
-    "name": "Gist Plugin",
-    "description": "Provides Gist feature on GitBucket.",
-    "versions": [
-      {
-        "version": "4.13.0",
-        "range": ">=4.23.0",
-        "url": "https://github.com/gitbucket/gitbucket-gist-plugin/releases/download/4.13.0/gitbucket-gist-plugin-assembly-4.13.0.jar"
-      }
-    ],
-    "default": false
-  },
-  {
-    "id": "pages",
-    "name": "Pages Plugin",
-    "description": "Project pages for gitbucket",
-    "versions": [
-      {
-        "version": "1.7.0",
-        "range": ">=4.23.0",
-        "url": "https://github.com/gitbucket/gitbucket-pages-plugin/releases/download/v1.7.0/gitbucket-pages-plugin_2.12-1.7.0.jar"
-      }
-    ],
-    "default": false
-  }
-]

project/build.properties

@@ -1 +1 @@
-sbt.version=1.1.3
+sbt.version=1.2.0

project/plugins.sbt

@@ -1,10 +1,8 @@
 scalacOptions ++= Seq("-unchecked", "-deprecation", "-feature")
 
-addSbtPlugin("com.geirsson"     % "sbt-scalafmt" % "1.4.0")
+addSbtPlugin("com.geirsson"     % "sbt-scalafmt" % "1.5.0")
 addSbtPlugin("com.typesafe.sbt" % "sbt-twirl"    % "1.3.13")
 addSbtPlugin("com.eed3si9n"     % "sbt-assembly" % "0.14.5")
-//addSbtPlugin("com.earldouglas"      % "xsbt-web-plugin"   % "4.0.0")
-//addSbtPlugin("fi.gekkio.sbtplugins" % "sbt-jrebel-plugin" % "0.10.0")
 addSbtPlugin("org.scalatra.sbt" % "sbt-scalatra" % "1.0.1")
 addSbtPlugin("com.jsuereth"     % "sbt-pgp"      % "1.1.0")
 addSbtCoursier

src/main/resources/bundle-plugins.txt

@@ -0,0 +1 @@
+notifications:1.6.0

src/main/resources/update/gitbucket-core_4.24.xml

@@ -0,0 +1,10 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<changeSet>
+  <createTable tableName="ACCOUNT_EXTRA_MAIL_ADDRESS">
+    <column name="USER_NAME" type="varchar(100)" nullable="false"/>
+    <column name="EXTRA_MAIL_ADDRESS" type="varchar(100)" nullable="false"/>
+  </createTable>
+
+  <addPrimaryKey constraintName="IDX_ACCOUNT_EXTRA_MAIL_ADDRESS_PK" tableName="ACCOUNT_EXTRA_MAIL_ADDRESS" columnNames="USER_NAME, EXTRA_MAIL_ADDRESS"/>
+  <addUniqueConstraint constraintName="IDX_ACCOUNT_EXTRA_MAIL_ADDRESS_1" tableName="ACCOUNT_EXTRA_MAIL_ADDRESS" columnNames="EXTRA_MAIL_ADDRESS"/>
+</changeSet>

src/main/resources/update/gitbucket-core_4.25.xml

@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<changeSet>
+  <modifyDataType columnName="PASSWORD" newDataType="varchar(200)" tableName="ACCOUNT"/>
+
+  <delete tableName="ACCOUNT_EXTRA_MAIL_ADDRESS">
+    <where>EXTRA_MAIL_ADDRESS = ''</where>
+  </delete>
+</changeSet>

src/main/resources/update/gitbucket-core_4.27.xml

@@ -0,0 +1,14 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<changeSet>
+  <addColumn tableName="COMMIT_COMMENT">
+    <column name="ORIGINAL_COMMIT_ID" type="varchar(100)" nullable="true"/>
+    <column name="ORIGINAL_OLD_LINE" type="int" nullable="true"/>
+    <column name="ORIGINAL_NEW_LINE" type="int" nullable="true"/>
+  </addColumn>
+  <update tableName="COMMIT_COMMENT">
+    <column name="ORIGINAL_COMMIT_ID" valueComputed="COMMIT_ID"/>
+    <column name="ORIGINAL_OLD_LINE" valueComputed="OLD_LINE_NUMBER"/>
+    <column name="ORIGINAL_NEW_LINE" valueComputed="NEW_LINE_NUMBER"/>
+  </update>
+  <addNotNullConstraint columnName="ORIGINAL_COMMIT_ID" tableName="COMMIT_COMMENT" columnDataType="varchar(100)"/>
+</changeSet>

src/main/scala/ScalatraBootstrap.scala

@@ -28,7 +28,7 @@ class ScalatraBootstrap extends LifeCycle with SystemSettingsService {
     context.addFilter("apiAuthenticationFilter", new ApiAuthenticationFilter)
     context
       .getFilterRegistration("apiAuthenticationFilter")
-      .addMappingForUrlPatterns(EnumSet.allOf(classOf[DispatcherType]), true, "/api/v3/*")
+      .addMappingForUrlPatterns(EnumSet.allOf(classOf[DispatcherType]), true, "/api/*")
 
     // Register controllers
     context.mount(new PreProcessController, "/*")

src/main/scala/gitbucket/core/GitBucketCoreModule.scala

@@ -51,5 +51,11 @@ object GitBucketCoreModule
       new Version("4.21.2"),
       new Version("4.22.0", new LiquibaseMigration("update/gitbucket-core_4.22.xml")),
       new Version("4.23.0", new LiquibaseMigration("update/gitbucket-core_4.23.xml")),
-      new Version("4.23.1")
+      new Version("4.23.1"),
+      new Version("4.24.0", new LiquibaseMigration("update/gitbucket-core_4.24.xml")),
+      new Version("4.24.1"),
+      new Version("4.25.0", new LiquibaseMigration("update/gitbucket-core_4.25.xml")),
+      new Version("4.26.0"),
+      new Version("4.27.0", new LiquibaseMigration("update/gitbucket-core_4.27.xml")),
+      new Version("4.28.0")
     )

src/main/scala/gitbucket/core/api/ApiIssue.scala

@@ -18,6 +18,7 @@ case class ApiIssue(
   updated_at: Date,
   body: String
 )(repositoryName: RepositoryName, isPullRequest: Boolean) {
+  val id = 0 // dummy id
   val comments_url = ApiPath(s"/api/v3/repos/${repositoryName.fullName}/issues/${number}/comments")
   val html_url = ApiPath(s"/${repositoryName.fullName}/${if (isPullRequest) { "pull" } else { "issues" }}/${number}")
   val pull_request = if (isPullRequest) {

src/main/scala/gitbucket/core/api/ApiPullRequest.scala

@@ -23,6 +23,7 @@ case class ApiPullRequest(
   labels: List[ApiLabel],
   assignee: Option[ApiUser]
 ) {
+  val id = 0 // dummy id
   val html_url = ApiPath(s"${base.repo.html_url.path}/pull/${number}")
   //val diff_url            = ApiPath(s"${base.repo.html_url.path}/pull/${number}.diff")
   //val patch_url           = ApiPath(s"${base.repo.html_url.path}/pull/${number}.patch")

src/main/scala/gitbucket/core/api/ApiPullRequestReviewComment.scala

@@ -17,7 +17,7 @@ case class ApiPullRequestReviewComment(
   commit_id: String, // "0d1a26e67d8f5eaf1f6ba5c57fc3c7d91ac0fd1c",
   // "original_commit_id": "0d1a26e67d8f5eaf1f6ba5c57fc3c7d91ac0fd1c",
   user: ApiUser,
-  body: String, // "Maybe you should use more emojji on this line.",
+  body: String, // "Maybe you should use more emoji on this line.",
   created_at: Date, // "2015-05-05T23:40:27Z",
   updated_at: Date // "2015-05-05T23:40:27Z",
 )(repositoryName: RepositoryName, issueId: Int)

src/main/scala/gitbucket/core/api/ApiRepository.scala

@@ -14,6 +14,7 @@ case class ApiRepository(
   default_branch: String,
   owner: ApiUser
 )(urlIsHtmlUrl: Boolean) {
+  val id = 0 // dummy id
   val forks_count = forks
   val watchers_count = watchers
   val url = if (urlIsHtmlUrl) {

src/main/scala/gitbucket/core/api/ApiUser.scala

@@ -5,6 +5,7 @@ import gitbucket.core.model.Account
 import java.util.Date
 
 case class ApiUser(login: String, email: String, `type`: String, site_admin: Boolean, created_at: Date) {
+  val id = 0 // dummy id
   val url = ApiPath(s"/api/v3/users/${login}")
   val html_url = ApiPath(s"/${login}")
   val avatar_url = ApiPath(s"/${login}/_avatar")

src/main/scala/gitbucket/core/controller/AccountController.scala

@@ -1,8 +1,10 @@
 package gitbucket.core.controller
 
+import java.io.File
+
 import gitbucket.core.account.html
 import gitbucket.core.helper
-import gitbucket.core.model.{AccountWebHook, GroupMember, RepositoryWebHook, Role, WebHook, WebHookContentType}
+import gitbucket.core.model._
 import gitbucket.core.plugin.PluginRegistry
 import gitbucket.core.service._
 import gitbucket.core.service.WebHookService._
@@ -54,6 +56,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
     password: String,
     fullName: String,
     mailAddress: String,
+    extraMailAddresses: List[String],
     description: Option[String],
     url: Option[String],
     fileId: Option[String]
@@ -63,6 +66,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
     password: Option[String],
     fullName: String,
     mailAddress: String,
+    extraMailAddresses: List[String],
     description: Option[String],
     url: Option[String],
     fileId: Option[String],
@@ -78,6 +82,9 @@ trait AccountControllerBase extends AccountManagementControllerBase {
     "password" -> trim(label("Password", text(required, maxlength(20), password))),
     "fullName" -> trim(label("Full Name", text(required, maxlength(100)))),
     "mailAddress" -> trim(label("Mail Address", text(required, maxlength(100), uniqueMailAddress()))),
+    "extraMailAddresses" -> list(
+      trim(label("Additional Mail Address", text(maxlength(100), uniqueExtraMailAddress())))
+    ),
     "description" -> trim(label("bio", optional(text()))),
     "url" -> trim(label("URL", optional(text(maxlength(200))))),
     "fileId" -> trim(label("File ID", optional(text())))
@@ -87,6 +94,9 @@ trait AccountControllerBase extends AccountManagementControllerBase {
     "password" -> trim(label("Password", optional(text(maxlength(20), password)))),
     "fullName" -> trim(label("Full Name", text(required, maxlength(100)))),
     "mailAddress" -> trim(label("Mail Address", text(required, maxlength(100), uniqueMailAddress("userName")))),
+    "extraMailAddresses" -> list(
+      trim(label("Additional Mail Address", text(maxlength(100), uniqueExtraMailAddress("userName"))))
+    ),
     "description" -> trim(label("bio", optional(text()))),
     "url" -> trim(label("URL", optional(text(maxlength(200))))),
     "fileId" -> trim(label("File ID", optional(text()))),
@@ -219,13 +229,15 @@ trait AccountControllerBase extends AccountManagementControllerBase {
   get("/:userName") {
     val userName = params("userName")
     getAccountByUserName(userName).map { account =>
+      val extraMailAddresses = getAccountExtraMailAddresses(userName)
       params.getOrElse("tab", "repositories") match {
         // Public Activity
         case "activity" =>
           gitbucket.core.account.html.activity(
             account,
             if (account.isGroupAccount) Nil else getGroupsByUserName(userName),
-            getActivitiesByUser(userName, true)
+            getActivitiesByUser(userName, true),
+            extraMailAddresses
           )
 
         // Members
@@ -234,6 +246,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
           gitbucket.core.account.html.members(
             account,
             members,
+            extraMailAddresses,
             context.loginAccount.exists(
               x =>
                 members.exists { member =>
@@ -250,6 +263,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
             account,
             if (account.isGroupAccount) Nil else getGroupsByUserName(userName),
             getVisibleRepositories(context.loginAccount, Some(userName)),
+            extraMailAddresses,
             context.loginAccount.exists(
               x =>
                 members.exists { member =>
@@ -268,6 +282,12 @@ trait AccountControllerBase extends AccountManagementControllerBase {
     helper.xml.feed(getActivitiesByUser(userName, true))
   }
 
+  get("/:userName.keys") {
+    val keys = getPublicKeys(params("userName"))
+    contentType = "text/plain; charset=utf-8"
+    keys.map(_.publicKey).mkString("", "\n", "\n")
+  }
+
   get("/:userName/_avatar") {
     val userName = params("userName")
     contentType = "image/png"
@@ -276,7 +296,9 @@ trait AccountControllerBase extends AccountManagementControllerBase {
         response.setDateHeader("Last-Modified", account.updatedDate.getTime)
         account.image
           .map { image =>
-            Some(RawData(FileUtil.getMimeType(image), new java.io.File(getUserUploadDir(userName), image)))
+            Some(
+              RawData(FileUtil.getMimeType(image), new File(getUserUploadDir(userName), FileUtil.checkFilename(image)))
+            )
           }
           .getOrElse {
             if (account.isGroupAccount) {
@@ -295,26 +317,29 @@ trait AccountControllerBase extends AccountManagementControllerBase {
   get("/:userName/_edit")(oneselfOnly {
     val userName = params("userName")
     getAccountByUserName(userName).map { x =>
-      html.edit(x, flash.get("info"), flash.get("error"))
+      val extraMails = getAccountExtraMailAddresses(userName)
+      html.edit(x, extraMails, flash.get("info"), flash.get("error"))
     } getOrElse NotFound()
   })
 
   post("/:userName/_edit", editForm)(oneselfOnly { form =>
     val userName = params("userName")
-    getAccountByUserName(userName).map { account =>
-      updateAccount(
-        account.copy(
-          password = form.password.map(sha1).getOrElse(account.password),
-          fullName = form.fullName,
-          mailAddress = form.mailAddress,
-          description = form.description,
-          url = form.url
+    getAccountByUserName(userName).map {
+      account =>
+        updateAccount(
+          account.copy(
+            password = form.password.map(pbkdf2_sha256).getOrElse(account.password),
+            fullName = form.fullName,
+            mailAddress = form.mailAddress,
+            description = form.description,
+            url = form.url
+          )
         )
-      )
 
-      updateImage(userName, form.fileId, form.clearImage)
-      flash += "info" -> "Account information has been updated."
-      redirect(s"/${userName}/_edit")
+        updateImage(userName, form.fileId, form.clearImage)
+        updateAccountExtraMailAddresses(userName, form.extraMailAddresses.filter(_ != ""))
+        flash += "info" -> "Account information has been updated."
+        redirect(s"/${userName}/_edit")
 
     } getOrElse NotFound()
   })
@@ -544,7 +569,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
     if (context.settings.allowAccountRegistration) {
       createAccount(
         form.userName,
-        sha1(form.password),
+        pbkdf2_sha256(form.password),
         form.fullName,
         form.mailAddress,
         false,
@@ -552,6 +577,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
         form.url
       )
       updateImage(form.userName, form.fileId, false)
+      updateAccountExtraMailAddresses(form.userName, form.extraMailAddresses.filter(_ != ""))
       redirect("/signin")
     } else NotFound()
   }
@@ -687,7 +713,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
           }
           helper.html.forkrepository(
             repository,
-            (groups zip managerPermissions).toMap
+            (groups zip managerPermissions).sortBy(_._1)
           )
         case _ => redirect(s"/${loginUserName}")
       }
@@ -715,7 +741,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
 
   private def existsAccount: Constraint = new Constraint() {
     override def validate(name: String, value: String, messages: Messages): Option[String] =
-      if (getAccountByUserName(value).isEmpty) Some("User or group does not exist.") else None
+      if (getAccountByUserNameIgnoreCase(value).isEmpty) Some("User or group does not exist.") else None
   }
 
   private def uniqueRepository: Constraint = new Constraint() {
@@ -727,7 +753,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
     ): Option[String] = {
       for {
         userName <- params.optionValue("owner")
-        _ <- getRepositoryNamesOfUser(userName).find(_ == value)
+        _ <- getRepositoryNamesOfUser(userName).find(_.equalsIgnoreCase(value))
       } yield {
         "Repository already exists."
       }

src/main/scala/gitbucket/core/controller/ApiController.scala

@@ -11,6 +11,8 @@ import gitbucket.core.util.JGitUtil._
 import gitbucket.core.util.SyntaxSugars._
 import gitbucket.core.util._
 import gitbucket.core.plugin.PluginRegistry
+import gitbucket.core.servlet.Database
+import gitbucket.core.model.Profile.profile.blockingApi._
 import gitbucket.core.view.helpers.{isRenderable, renderMarkup}
 import org.eclipse.jgit.api.Git
 import org.eclipse.jgit.revwalk.RevWalk
@@ -122,7 +124,7 @@ trait ApiControllerBase extends ControllerBase {
   /*
    * https://developer.github.com/v3/repos/branches/#list-branches
    */
-  get("/api/v3/repos/:owner/:repo/branches")(referrersOnly { repository =>
+  get("/api/v3/repos/:owner/:repository/branches")(referrersOnly { repository =>
     JsonFormat(
       JGitUtil
         .getBranches(
@@ -140,7 +142,7 @@ trait ApiControllerBase extends ControllerBase {
   /**
    * https://developer.github.com/v3/repos/branches/#get-branch
    */
-  get("/api/v3/repos/:owner/:repo/branches/*")(referrersOnly { repository =>
+  get("/api/v3/repos/:owner/:repository/branches/*")(referrersOnly { repository =>
     //import gitbucket.core.api._
     (for {
       branch <- params.get("splat") if repository.branchList.contains(branch)
@@ -161,14 +163,14 @@ trait ApiControllerBase extends ControllerBase {
   /*
    * https://developer.github.com/v3/repos/contents/#get-contents
    */
-  get("/api/v3/repos/:owner/:repo/contents")(referrersOnly { repository =>
+  get("/api/v3/repos/:owner/:repository/contents")(referrersOnly { repository =>
     getContents(repository, ".", params.getOrElse("ref", repository.repository.defaultBranch))
   })
 
   /*
    * https://developer.github.com/v3/repos/contents/#get-contents
    */
-  get("/api/v3/repos/:owner/:repo/contents/*")(referrersOnly { repository =>
+  get("/api/v3/repos/:owner/:repository/contents/*")(referrersOnly { repository =>
     getContents(repository, multiParams("splat").head, params.getOrElse("ref", repository.repository.defaultBranch))
   })
 
@@ -183,7 +185,7 @@ trait ApiControllerBase extends ControllerBase {
       getFileList(git, revision, dirName).find(f => f.name.equals(fileName))
     }
 
-    using(Git.open(getRepositoryDir(params("owner"), params("repo")))) { git =>
+    using(Git.open(getRepositoryDir(params("owner"), params("repository")))) { git =>
       val fileList = getFileList(git, refStr, path)
       if (fileList.isEmpty) { // file or NotFound
         getFileInfo(git, refStr, path)
@@ -242,9 +244,9 @@ trait ApiControllerBase extends ControllerBase {
   /*
    * https://developer.github.com/v3/git/refs/#get-a-reference
    */
-  get("/api/v3/repos/:owner/:repo/git/refs/*")(referrersOnly { repository =>
+  get("/api/v3/repos/:owner/:repository/git/refs/*")(referrersOnly { repository =>
     val revstr = multiParams("splat").head
-    using(Git.open(getRepositoryDir(params("owner"), params("repo")))) { git =>
+    using(Git.open(getRepositoryDir(params("owner"), params("repository")))) { git =>
       val ref = git.getRepository().findRef(revstr)
 
       if (ref != null) {
@@ -269,9 +271,11 @@ trait ApiControllerBase extends ControllerBase {
   /**
    * https://developer.github.com/v3/repos/collaborators/#list-collaborators
    */
-  get("/api/v3/repos/:owner/:repo/collaborators")(referrersOnly { repository =>
+  get("/api/v3/repos/:owner/:repository/collaborators")(referrersOnly { repository =>
     // TODO Should ApiUser take permission? getCollaboratorUserNames does not return owner group members.
-    JsonFormat(getCollaboratorUserNames(params("owner"), params("repo")).map(u => ApiUser(getAccountByUserName(u).get)))
+    JsonFormat(
+      getCollaboratorUserNames(params("owner"), params("repository")).map(u => ApiUser(getAccountByUserName(u).get))
+    )
   })
 
   /**
@@ -313,7 +317,10 @@ trait ApiControllerBase extends ControllerBase {
             data.auto_init
           )
           Await.result(f, Duration.Inf)
-          val repository = getRepository(owner, data.name).get
+
+          val repository = Database() withTransaction { session =>
+            getRepository(owner, data.name)(session).get
+          }
           JsonFormat(ApiRepository(repository, ApiUser(getAccountByUserName(owner).get)))
         } else {
           ApiError(
@@ -360,7 +367,7 @@ trait ApiControllerBase extends ControllerBase {
   /**
    * https://developer.github.com/v3/repos/#enabling-and-disabling-branch-protection
    */
-  patch("/api/v3/repos/:owner/:repo/branches/*")(ownerOnly { repository =>
+  patch("/api/v3/repos/:owner/:repository/branches/*")(ownerOnly { repository =>
     import gitbucket.core.api._
     (for {
       branch <- params.get("splat") if repository.branchList.contains(branch)
@@ -718,7 +725,7 @@ trait ApiControllerBase extends ControllerBase {
   /**
    * https://developer.github.com/v3/repos/statuses/#create-a-status
    */
-  post("/api/v3/repos/:owner/:repo/statuses/:sha")(writableUsersOnly { repository =>
+  post("/api/v3/repos/:owner/:repository/statuses/:sha")(writableUsersOnly { repository =>
     (for {
       ref <- params.get("sha")
       sha <- JGitUtil.getShaByRef(repository.owner, repository.name, ref)
@@ -747,7 +754,7 @@ trait ApiControllerBase extends ControllerBase {
    *
    * ref is Ref to list the statuses from. It can be a SHA, a branch name, or a tag name.
    */
-  val listStatusesRoute = get("/api/v3/repos/:owner/:repo/commits/:ref/statuses")(referrersOnly { repository =>
+  val listStatusesRoute = get("/api/v3/repos/:owner/:repository/commits/:ref/statuses")(referrersOnly { repository =>
     (for {
       ref <- params.get("ref")
       sha <- JGitUtil.getShaByRef(repository.owner, repository.name, ref)
@@ -764,7 +771,7 @@ trait ApiControllerBase extends ControllerBase {
    *
    * legacy route
    */
-  get("/api/v3/repos/:owner/:repo/statuses/:ref") {
+  get("/api/v3/repos/:owner/:repository/statuses/:ref") {
     listStatusesRoute.action()
   }
 
@@ -773,7 +780,7 @@ trait ApiControllerBase extends ControllerBase {
    *
    * ref is Ref to list the statuses from. It can be a SHA, a branch name, or a tag name.
    */
-  get("/api/v3/repos/:owner/:repo/commits/:ref/status")(referrersOnly { repository =>
+  get("/api/v3/repos/:owner/:repository/commits/:ref/status")(referrersOnly { repository =>
     (for {
       ref <- params.get("ref")
       owner <- getAccountByUserName(repository.owner)
@@ -787,7 +794,7 @@ trait ApiControllerBase extends ControllerBase {
   /**
    * https://developer.github.com/v3/repos/commits/#get-a-single-commit
    */
-  get("/api/v3/repos/:owner/:repo/commits/:sha")(referrersOnly { repository =>
+  get("/api/v3/repos/:owner/:repository/commits/:sha")(referrersOnly { repository =>
     val owner = repository.owner
     val name = repository.name
     val sha = params("sha")
@@ -804,7 +811,7 @@ trait ApiControllerBase extends ControllerBase {
           ApiCommits(
             repositoryName = RepositoryName(repository),
             commitInfo = commitInfo,
-            diffs = JGitUtil.getDiffs(git, Some(commitInfo.parents.head), commitInfo.id, false, true),
+            diffs = JGitUtil.getDiffs(git, commitInfo.parents.headOption, commitInfo.id, false, true),
             author = getAccount(commitInfo.authorName, commitInfo.authorEmailAddress),
             committer = getAccount(commitInfo.committerName, commitInfo.committerEmailAddress),
             commentCount = getCommitComment(repository.owner, repository.name, sha).size
@@ -839,7 +846,7 @@ trait ApiControllerBase extends ControllerBase {
   /**
    * non-GitHub compatible API for Jenkins-Plugin
    */
-  get("/api/v3/repos/:owner/:repo/raw/*")(referrersOnly { repository =>
+  get("/api/v3/repos/:owner/:repository/raw/*")(referrersOnly { repository =>
     val (id, path) = repository.splitPath(multiParams("splat").head)
     using(Git.open(getRepositoryDir(repository.owner, repository.name))) { git =>
       val revCommit = JGitUtil.getRevCommitFromId(git, git.getRepository.resolve(id))

src/main/scala/gitbucket/core/controller/ControllerBase.scala

@@ -1,8 +1,8 @@
 package gitbucket.core.controller
 
-import java.io.FileInputStream
+import java.io.{File, FileInputStream}
 
-import gitbucket.core.api.ApiError
+import gitbucket.core.api.{ApiError, JsonFormat}
 import gitbucket.core.model.Account
 import gitbucket.core.service.{AccountService, RepositoryService, SystemSettingsService}
 import gitbucket.core.util.SyntaxSugars._
@@ -46,6 +46,7 @@ abstract class ControllerBase
 
   before("/api/v3/*") {
     contentType = formats("json")
+    request.setAttribute(Keys.Request.APIv3, true)
   }
 
   override def requestPath(uri: String, idx: Int): String = {
@@ -67,14 +68,11 @@ abstract class ControllerBase
         // Git repository
         chain.doFilter(request, response)
       } else {
-        if (path.startsWith("/api/v3/")) {
-          httpRequest.setAttribute(Keys.Request.APIv3, true)
-        }
         // Scalatra actions
         super.doFilter(request, response, chain)
       }
     } finally {
-      contextCache.remove();
+      contextCache.remove()
     }
 
   private val contextCache = new java.lang.ThreadLocal[Context]()
@@ -125,7 +123,7 @@ abstract class ControllerBase
       org.scalatra.NotFound()
     } else if (request.hasAttribute(Keys.Request.APIv3)) {
       contentType = formats("json")
-      org.scalatra.NotFound(ApiError("Not Found"))
+      org.scalatra.NotFound(JsonFormat(ApiError("Not Found")))
     } else {
       org.scalatra.NotFound(gitbucket.core.html.error("Not Found"))
     }
@@ -145,7 +143,7 @@ abstract class ControllerBase
       org.scalatra.Unauthorized()
     } else if (request.hasAttribute(Keys.Request.APIv3)) {
       contentType = formats("json")
-      org.scalatra.Unauthorized(ApiError("Requires authentication"))
+      org.scalatra.Unauthorized(JsonFormat(ApiError("Requires authentication")))
     } else if (!isBrowser(request.getHeader("USER-AGENT"))) {
       org.scalatra.Unauthorized()
     } else {
@@ -177,7 +175,7 @@ abstract class ControllerBase
         org.scalatra.InternalServerError()
       } else if (request.hasAttribute(Keys.Request.APIv3)) {
         contentType = formats("json")
-        org.scalatra.InternalServerError(ApiError("Internal Server Error"))
+        org.scalatra.InternalServerError(JsonFormat(ApiError("Internal Server Error")))
       } else {
         org.scalatra.InternalServerError(gitbucket.core.html.error("Internal Server Error", Some(e)))
       }
@@ -256,7 +254,7 @@ abstract class ControllerBase
     repository: RepositoryService.RepositoryInfo
   ): Unit = {
     JGitUtil.getObjectLoaderFromId(git, objectId) { loader =>
-      contentType = FileUtil.getMimeType(path)
+      contentType = FileUtil.getSafeMimeType(path)
 
       if (loader.isLarge) {
         response.setContentLength(loader.getSize.toInt)
@@ -328,28 +326,28 @@ trait AccountManagementControllerBase extends ControllerBase {
 
   protected def updateImage(userName: String, fileId: Option[String], clearImage: Boolean): Unit =
     if (clearImage) {
-      getAccountByUserName(userName).flatMap(_.image).map { image =>
-        new java.io.File(getUserUploadDir(userName), image).delete()
+      getAccountByUserName(userName).flatMap(_.image).foreach { image =>
+        new File(getUserUploadDir(userName), FileUtil.checkFilename(image)).delete()
         updateAvatarImage(userName, None)
       }
     } else {
-      fileId.map { fileId =>
+      fileId.foreach { fileId =>
         val filename = "avatar." + FileUtil.getExtension(session.getAndRemove(Keys.Session.Upload(fileId)).get)
         val uploadDir = getUserUploadDir(userName)
         if (!uploadDir.exists) {
           uploadDir.mkdirs()
         }
         Thumbnails
-          .of(new java.io.File(getTemporaryDir(session.getId), fileId))
+          .of(new File(getTemporaryDir(session.getId), FileUtil.checkFilename(fileId)))
           .size(324, 324)
-          .toFile(new java.io.File(uploadDir, filename))
+          .toFile(new File(uploadDir, FileUtil.checkFilename(filename)))
         updateAvatarImage(userName, Some(filename))
       }
     }
 
   protected def uniqueUserName: Constraint = new Constraint() {
     override def validate(name: String, value: String, messages: Messages): Option[String] =
-      getAccountByUserName(value, true).map { _ =>
+      getAccountByUserNameIgnoreCase(value, true).map { _ =>
         "User already exists."
       }
   }
@@ -361,13 +359,42 @@ trait AccountManagementControllerBase extends ControllerBase {
       params: Map[String, Seq[String]],
       messages: Messages
     ): Option[String] = {
-      getAccountByMailAddress(value, true)
-        .filter { x =>
-          if (paramName.isEmpty) true else Some(x.userName) != params.optionValue(paramName)
-        }
-        .map { _ =>
-          "Mail address is already registered."
-        }
+      val extraMailAddresses = params.filterKeys(k => k.startsWith("extraMailAddresses"))
+      if (extraMailAddresses.exists {
+            case (k, v) =>
+              v.contains(value)
+          }) {
+        Some("These mail addresses are duplicated.")
+      } else {
+        getAccountByMailAddress(value, true)
+          .collect {
+            case x if paramName.isEmpty || Some(x.userName) != params.optionValue(paramName) =>
+              "Mail address is already registered."
+          }
+      }
+    }
+  }
+
+  protected def uniqueExtraMailAddress(paramName: String = ""): Constraint = new Constraint() {
+    override def validate(
+      name: String,
+      value: String,
+      params: Map[String, Seq[String]],
+      messages: Messages
+    ): Option[String] = {
+      val extraMailAddresses = params.filterKeys(k => k.startsWith("extraMailAddresses"))
+      if (Some(value) == params.optionValue("mailAddress") || extraMailAddresses.count {
+            case (k, v) =>
+              v.contains(value)
+          } > 1) {
+        Some("These mail addresses are duplicated.")
+      } else {
+        getAccountByMailAddress(value, true)
+          .collect {
+            case x if paramName.isEmpty || Some(x.userName) != params.optionValue(paramName) =>
+              "Mail address is already registered."
+          }
+      }
     }
   }
 
@@ -386,9 +413,10 @@ trait AccountManagementControllerBase extends ControllerBase {
     "groups",
     "new"
   )
+
   protected def reservedNames(): Constraint = new Constraint() {
     override def validate(name: String, value: String, messages: Messages): Option[String] =
-      if (allReservedNames.contains(value)) {
+      if (allReservedNames.contains(value.toLowerCase)) {
         Some(s"${value} is reserved")
       } else {
         None

src/main/scala/gitbucket/core/controller/DashboardController.scala

@@ -21,6 +21,11 @@ class DashboardController
 trait DashboardControllerBase extends ControllerBase {
   self: IssuesService with PullRequestService with RepositoryService with AccountService with UsersAuthenticator =>
 
+  get("/dashboard/repos")(usersOnly {
+    val repos = getVisibleRepositories(context.loginAccount, withoutPhysicalInfo = true)
+    html.repos(getGroupNames(context.loginAccount.get.userName), repos, repos)
+  })
+
   get("/dashboard/issues")(usersOnly {
     searchIssues("created_by")
   })
@@ -83,8 +88,7 @@ trait DashboardControllerBase extends ControllerBase {
       },
       filter,
       getGroupNames(userName),
-      Nil,
-      getUserRepositories(userName, withoutPhysicalInfo = true)
+      getVisibleRepositories(context.loginAccount, withoutPhysicalInfo = true)
     )
   }
 
@@ -109,8 +113,7 @@ trait DashboardControllerBase extends ControllerBase {
       },
       filter,
       getGroupNames(userName),
-      Nil,
-      getUserRepositories(userName, withoutPhysicalInfo = true)
+      getVisibleRepositories(context.loginAccount, withoutPhysicalInfo = true)
     )
   }
 

src/main/scala/gitbucket/core/controller/FileUploadController.scala

@@ -1,7 +1,9 @@
 package gitbucket.core.controller
 
+import java.io.File
+
 import gitbucket.core.model.Account
-import gitbucket.core.service.{AccountService, RepositoryService, ReleaseService}
+import gitbucket.core.service.{AccountService, ReleaseService, RepositoryService}
 import gitbucket.core.servlet.Database
 import gitbucket.core.util._
 import gitbucket.core.util.SyntaxSugars._
@@ -31,7 +33,8 @@ class FileUploadController
   post("/image") {
     execute(
       { (file, fileId) =>
-        FileUtils.writeByteArrayToFile(new java.io.File(getTemporaryDir(session.getId), fileId), file.get)
+        FileUtils
+          .writeByteArrayToFile(new File(getTemporaryDir(session.getId), FileUtil.checkFilename(fileId)), file.get)
         session += Keys.Session.Upload(fileId) -> file.name
       },
       FileUtil.isImage
@@ -41,7 +44,8 @@ class FileUploadController
   post("/tmp") {
     execute(
       { (file, fileId) =>
-        FileUtils.writeByteArrayToFile(new java.io.File(getTemporaryDir(session.getId), fileId), file.get)
+        FileUtils
+          .writeByteArrayToFile(new File(getTemporaryDir(session.getId), FileUtil.checkFilename(fileId)), file.get)
         session += Keys.Session.Upload(fileId) -> file.name
       },
       _ => true
@@ -52,9 +56,9 @@ class FileUploadController
     execute(
       { (file, fileId) =>
         FileUtils.writeByteArrayToFile(
-          new java.io.File(
+          new File(
             getAttachedDir(params("owner"), params("repository")),
-            fileId + "." + FileUtil.getExtension(file.getName)
+            FileUtil.checkFilename(fileId + "." + FileUtil.getExtension(file.getName))
           ),
           file.get
         )
@@ -129,12 +133,15 @@ class FileUploadController
           val owner = params("owner")
           val repository = params("repository")
           val tag = params("tag")
-          execute({ (file, fileId) =>
-            FileUtils.writeByteArrayToFile(
-              new java.io.File(getReleaseFilesDir(owner, repository), tag + "/" + fileId),
-              file.get
-            )
-          }, _ => true)
+          execute(
+            { (file, fileId) =>
+              FileUtils.writeByteArrayToFile(
+                new File(getReleaseFilesDir(owner, repository), FileUtil.checkFilename(tag + "/" + fileId)),
+                file.get
+              )
+            },
+            _ => true
+          )
       }
       .getOrElse(BadRequest())
   }

src/main/scala/gitbucket/core/controller/IndexController.scala

@@ -9,7 +9,7 @@ import gitbucket.core.model.Account
 import gitbucket.core.service._
 import gitbucket.core.util.Implicits._
 import gitbucket.core.util.SyntaxSugars._
-import gitbucket.core.util.{Keys, LDAPUtil, ReferrerAuthenticator, UsersAuthenticator}
+import gitbucket.core.util._
 import org.scalatra.Ok
 import org.scalatra.forms._
 
@@ -64,8 +64,7 @@ trait IndexControllerBase extends ControllerBase {
         val visibleOwnerSet: Set[String] = Set(account.userName) ++ getGroupsByUserName(account.userName)
         gitbucket.core.html.index(
           getRecentActivitiesByOwners(visibleOwnerSet),
-          Nil,
-          getUserRepositories(account.userName, withoutPhysicalInfo = true),
+          getVisibleRepositories(Some(account), withoutPhysicalInfo = true),
           showBannerToCreatePersonalAccessToken = hasAccountFederation(account.userName) && !hasAccessToken(
             account.userName
           )
@@ -75,7 +74,6 @@ trait IndexControllerBase extends ControllerBase {
         gitbucket.core.html.index(
           getRecentActivities(),
           getVisibleRepositories(None, withoutPhysicalInfo = true),
-          Nil,
           showBannerToCreatePersonalAccessToken = false
         )
       }
@@ -208,7 +206,7 @@ trait IndexControllerBase extends ControllerBase {
             }
             .map { t =>
               Map(
-                "label" -> s"<b>@${t.userName}</b> ${t.fullName}",
+                "label" -> s"<b>@${StringUtil.escapeHtml(t.userName)}</b> ${StringUtil.escapeHtml(t.fullName)}",
                 "value" -> t.userName
               )
             }
@@ -222,7 +220,7 @@ trait IndexControllerBase extends ControllerBase {
    * Returns a single string which is any of "group", "user" or "".
    */
   post("/_user/existence")(usersOnly {
-    getAccountByUserName(params("userName")).map { account =>
+    getAccountByUserNameIgnoreCase(params("userName")).map { account =>
       if (account.isGroupAccount) "group" else "user"
     } getOrElse ""
   })
@@ -239,9 +237,19 @@ trait IndexControllerBase extends ControllerBase {
         }
 
         target.toLowerCase match {
-          case "issue" =>
+          case "issues" =>
             gitbucket.core.search.html.issues(
-              if (query.nonEmpty) searchIssues(repository.owner, repository.name, query) else Nil,
+              if (query.nonEmpty) searchIssues(repository.owner, repository.name, query, false) else Nil,
+              false,
+              query,
+              page,
+              repository
+            )
+
+          case "pulls" =>
+            gitbucket.core.search.html.issues(
+              if (query.nonEmpty) searchIssues(repository.owner, repository.name, query, true) else Nil,
+              true,
               query,
               page,
               repository
@@ -273,18 +281,7 @@ trait IndexControllerBase extends ControllerBase {
     val repositories = visibleRepositories.filter { repository =>
       repository.name.toLowerCase.indexOf(query) >= 0 || repository.owner.toLowerCase.indexOf(query) >= 0
     }
-    context.loginAccount
-      .map { account =>
-        gitbucket.core.search.html.repositories(
-          query,
-          repositories,
-          Nil,
-          getUserRepositories(account.userName, withoutPhysicalInfo = true)
-        )
-      }
-      .getOrElse {
-        gitbucket.core.search.html.repositories(query, repositories, visibleRepositories, Nil)
-      }
+    gitbucket.core.search.html.repositories(query, repositories, visibleRepositories)
   }
 
 }

src/main/scala/gitbucket/core/controller/IssuesController.scala

@@ -154,15 +154,25 @@ trait IssuesControllerBase extends ControllerBase {
   ajaxPost("/:owner/:repository/issues/edit_title/:id", issueTitleEditForm)(readableUsersOnly { (title, repository) =>
     defining(repository.owner, repository.name) {
       case (owner, name) =>
-        getIssue(owner, name, params("id")).map { issue =>
-          if (isEditableContent(owner, name, issue.openedUserName)) {
-            // update issue
-            updateIssue(owner, name, issue.issueId, title, issue.content)
-            // extract references and create refer comment
-            createReferComment(owner, name, issue.copy(title = title), title, context.loginAccount.get)
-
-            redirect(s"/${owner}/${name}/issues/_data/${issue.issueId}")
-          } else Unauthorized()
+        getIssue(owner, name, params("id")).map {
+          issue =>
+            if (isEditableContent(owner, name, issue.openedUserName)) {
+              if (issue.title != title) {
+                // update issue
+                updateIssue(owner, name, issue.issueId, title, issue.content)
+                // extract references and create refer comment
+                createReferComment(owner, name, issue.copy(title = title), title, context.loginAccount.get)
+                createComment(
+                  owner,
+                  name,
+                  context.loginAccount.get.userName,
+                  issue.issueId,
+                  issue.title + "\r\n" + title,
+                  "change_title"
+                )
+              }
+              redirect(s"/${owner}/${name}/issues/_data/${issue.issueId}")
+            } else Unauthorized()
         } getOrElse NotFound()
     }
   })
@@ -396,7 +406,7 @@ trait IssuesControllerBase extends ControllerBase {
       case dir if (dir.exists && dir.isDirectory) =>
         dir.listFiles.find(_.getName.startsWith(params("file") + ".")).map { file =>
           response.setHeader("Content-Disposition", f"""inline; filename=${file.getName}""")
-          RawData(FileUtil.getMimeType(file.getName), file)
+          RawData(FileUtil.getSafeMimeType(file.getName), file)
         }
       case _ => None
     }) getOrElse NotFound()

src/main/scala/gitbucket/core/controller/PreProcessController.scala

@@ -7,20 +7,21 @@ class PreProcessController extends PreProcessControllerBase
 trait PreProcessControllerBase extends ControllerBase {
 
   /**
-   * Provides GitHub compatible URLs for Git client.
-   *
-   * <ul>
-   *   <li>git clone http://localhost:8080/owner/repo</li>
-   *   <li>git clone http://localhost:8080/owner/repo.git</li>
-   * </ul>
-   *
-   * @see https://git-scm.com/book/en/v2/Git-Internals-Transfer-Protocols
+   * Provides GitHub compatible URLs (e.g. http://localhost:8080/owner/repo.git) for Git client.
    */
   get("/*/*/info/refs") {
     val query = Option(request.getQueryString).map("?" + _).getOrElse("")
     halt(MovedPermanently(baseUrl + "/git" + request.getRequestURI + query))
   }
 
+  /**
+   * Provides GitHub compatible URLs for GitLFS client.
+   */
+  post("/*/*/info/lfs/objects/batch") {
+    val dispatcher = request.getRequestDispatcher("/git" + request.getRequestURI)
+    dispatcher.forward(request, response)
+  }
+
   /**
    * Filter requests from anonymous users.
    *

src/main/scala/gitbucket/core/controller/PullRequestsController.scala

@@ -1,6 +1,6 @@
 package gitbucket.core.controller
 
-import gitbucket.core.model.WebHook
+import gitbucket.core.model.{CommitComment, CommitComments, IssueComment, WebHook}
 import gitbucket.core.plugin.PluginRegistry
 import gitbucket.core.pulls.html
 import gitbucket.core.service.CommitStatusService
@@ -113,33 +113,92 @@ trait PullRequestsControllerBase extends ControllerBase {
         val name = repository.name
         getPullRequest(owner, name, issueId) map {
           case (issue, pullreq) =>
-            using(Git.open(getRepositoryDir(owner, name))) {
-              git =>
-                val (commits, diffs) =
-                  getRequestCompareInfo(owner, name, pullreq.commitIdFrom, owner, name, pullreq.commitIdTo)
-                html.pullreq(
-                  issue,
-                  pullreq,
-                  (commits.flatten
-                    .map(commit => getCommitComments(owner, name, commit.id, true))
-                    .flatten
-                    .toList ::: getComments(owner, name, issueId))
-                    .sortWith((a, b) => a.registeredDate before b.registeredDate),
-                  getIssueLabels(owner, name, issueId),
-                  getAssignableUserNames(owner, name),
-                  getMilestonesWithIssueCount(owner, name),
-                  getPriorities(owner, name),
-                  getLabels(owner, name),
-                  commits,
-                  diffs,
-                  isEditable(repository),
-                  isManageable(repository),
-                  hasDeveloperRole(pullreq.requestUserName, pullreq.requestRepositoryName, context.loginAccount),
-                  repository,
-                  getRepository(pullreq.requestUserName, pullreq.requestRepositoryName),
-                  flash.toMap.map(f => f._1 -> f._2.toString)
-                )
-            }
+            val (commits, diffs) =
+              getRequestCompareInfo(owner, name, pullreq.commitIdFrom, owner, name, pullreq.commitIdTo)
+
+            html.conversation(
+              issue,
+              pullreq,
+              commits.flatten,
+              getPullRequestComments(owner, name, issue.issueId, commits.flatten),
+              diffs.size,
+              getIssueLabels(owner, name, issueId),
+              getAssignableUserNames(owner, name),
+              getMilestonesWithIssueCount(owner, name),
+              getPriorities(owner, name),
+              getLabels(owner, name),
+              isEditable(repository),
+              isManageable(repository),
+              hasDeveloperRole(pullreq.requestUserName, pullreq.requestRepositoryName, context.loginAccount),
+              repository,
+              getRepository(pullreq.requestUserName, pullreq.requestRepositoryName),
+              flash.toMap.map(f => f._1 -> f._2.toString)
+            )
+
+//                html.pullreq(
+//                  issue,
+//                  pullreq,
+//                  comments,
+//                  getIssueLabels(owner, name, issueId),
+//                  getAssignableUserNames(owner, name),
+//                  getMilestonesWithIssueCount(owner, name),
+//                  getPriorities(owner, name),
+//                  getLabels(owner, name),
+//                  commits,
+//                  diffs,
+//                  isEditable(repository),
+//                  isManageable(repository),
+//                  hasDeveloperRole(pullreq.requestUserName, pullreq.requestRepositoryName, context.loginAccount),
+//                  repository,
+//                  getRepository(pullreq.requestUserName, pullreq.requestRepositoryName),
+//                  flash.toMap.map(f => f._1 -> f._2.toString)
+//                )
+        }
+    } getOrElse NotFound()
+  })
+
+  get("/:owner/:repository/pull/:id/commits")(referrersOnly { repository =>
+    params("id").toIntOpt.flatMap {
+      issueId =>
+        val owner = repository.owner
+        val name = repository.name
+        getPullRequest(owner, name, issueId) map {
+          case (issue, pullreq) =>
+            val (commits, diffs) =
+              getRequestCompareInfo(owner, name, pullreq.commitIdFrom, owner, name, pullreq.commitIdTo)
+
+            html.commits(
+              issue,
+              pullreq,
+              commits,
+              getPullRequestComments(owner, name, issue.issueId, commits.flatten),
+              diffs.size,
+              isManageable(repository),
+              repository
+            )
+        }
+    } getOrElse NotFound()
+  })
+
+  get("/:owner/:repository/pull/:id/files")(referrersOnly { repository =>
+    params("id").toIntOpt.flatMap {
+      issueId =>
+        val owner = repository.owner
+        val name = repository.name
+        getPullRequest(owner, name, issueId) map {
+          case (issue, pullreq) =>
+            val (commits, diffs) =
+              getRequestCompareInfo(owner, name, pullreq.commitIdFrom, owner, name, pullreq.commitIdTo)
+
+            html.files(
+              issue,
+              pullreq,
+              diffs,
+              commits.flatten,
+              getPullRequestComments(owner, name, issue.issueId, commits.flatten),
+              isManageable(repository),
+              repository
+            )
         }
     } getOrElse NotFound()
   })
@@ -293,8 +352,17 @@ trait PullRequestsControllerBase extends ControllerBase {
 
                   // close issue by commit message
                   if (pullreq.requestBranch == repository.repository.defaultBranch) {
-                    commits.map { commit =>
-                      closeIssuesFromMessage(commit.fullMessage, loginAccount.userName, owner, name)
+                    commits.foreach { commit =>
+                      closeIssuesFromMessage(commit.fullMessage, loginAccount.userName, owner, name).foreach {
+                        issueId =>
+                          getIssue(repository.owner, repository.name, issueId.toString).foreach { issue =>
+                            callIssuesWebHook("closed", repository, issue, baseUrl, loginAccount)
+                            PluginRegistry().getIssueHooks
+                              .foreach(
+                                _.closedByCommitComment(issue, repository, commit.fullMessage, loginAccount)
+                              )
+                          }
+                      }
                     }
                   }
 
@@ -399,15 +467,35 @@ trait PullRequestsControllerBase extends ControllerBase {
                     val defaultBranch = getRepository(owner, name).get.repository.defaultBranch
                     if (pullreq.branch == defaultBranch) {
                       commits.flatten.foreach { commit =>
-                        closeIssuesFromMessage(commit.fullMessage, loginAccount.userName, owner, name)
+                        closeIssuesFromMessage(commit.fullMessage, loginAccount.userName, owner, name).foreach {
+                          issueId =>
+                            getIssue(owner, name, issueId.toString).foreach { issue =>
+                              callIssuesWebHook("closed", repository, issue, baseUrl, loginAccount)
+                              PluginRegistry().getIssueHooks
+                                .foreach(_.closedByCommitComment(issue, repository, commit.fullMessage, loginAccount))
+                            }
+                        }
                       }
+                      val issueContent = issue.title + " " + issue.content.getOrElse("")
                       closeIssuesFromMessage(
-                        issue.title + " " + issue.content.getOrElse(""),
+                        issueContent,
                         loginAccount.userName,
                         owner,
                         name
-                      )
-                      closeIssuesFromMessage(form.message, loginAccount.userName, owner, name)
+                      ).foreach { issueId =>
+                        getIssue(owner, name, issueId.toString).foreach { issue =>
+                          callIssuesWebHook("closed", repository, issue, baseUrl, loginAccount)
+                          PluginRegistry().getIssueHooks
+                            .foreach(_.closedByCommitComment(issue, repository, issueContent, loginAccount))
+                        }
+                      }
+                      closeIssuesFromMessage(form.message, loginAccount.userName, owner, name).foreach { issueId =>
+                        getIssue(owner, name, issueId.toString).foreach { issue =>
+                          callIssuesWebHook("closed", repository, issue, baseUrl, loginAccount)
+                          PluginRegistry().getIssueHooks
+                            .foreach(_.closedByCommitComment(issue, repository, issueContent, loginAccount))
+                        }
+                      }
                     }
 
                     updatePullRequests(owner, name, pullreq.branch)
@@ -554,7 +642,7 @@ trait PullRequestsControllerBase extends ControllerBase {
                   case _ =>
                     forkedRepository.repository :: getForkedRepositories(forkedRepository.owner, forkedRepository.name)
                 }).map { repository =>
-                  (repository.userName, repository.repositoryName)
+                  (repository.userName, repository.repositoryName, repository.defaultBranch)
                 },
                 commits.flatten
                   .map(commit => getCommitComments(forkedRepository.owner, forkedRepository.name, commit.id, false))
@@ -655,7 +743,7 @@ trait PullRequestsControllerBase extends ControllerBase {
 
         // insert labels
         if (manageable) {
-          form.labelNames.map { value =>
+          form.labelNames.foreach { value =>
             val labels = getLabels(owner, name)
             value.split(",").foreach { labelName =>
               labels.find(_.labelName == labelName).map { label =>
@@ -693,6 +781,10 @@ trait PullRequestsControllerBase extends ControllerBase {
   })
 
   ajaxGet("/:owner/:repository/pulls/proposals")(readableUsersOnly { repository =>
+    val thresholdTime = System.currentTimeMillis() - (1000 * 60 * 60)
+    val mailAddresses =
+      context.loginAccount.map(x => Seq(x.mailAddress) ++ getAccountExtraMailAddresses(x.userName)).getOrElse(Nil)
+
     val branches = JGitUtil
       .getBranches(
         owner = repository.owner,
@@ -700,8 +792,14 @@ trait PullRequestsControllerBase extends ControllerBase {
         defaultBranch = repository.repository.defaultBranch,
         origin = repository.repository.originUserName.isEmpty
       )
-      .filter(x => x.mergeInfo.map(_.ahead).getOrElse(0) > 0 && x.mergeInfo.map(_.behind).getOrElse(0) == 0)
-      .sortBy(br => (br.mergeInfo.isEmpty, br.commitTime))
+      .filter { x =>
+        x.mergeInfo.map(_.ahead).getOrElse(0) > 0 && x.mergeInfo.map(_.behind).getOrElse(0) == 0 &&
+        x.commitTime.getTime > thresholdTime &&
+        mailAddresses.contains(x.committerEmailAddress)
+      }
+      .sortBy { br =>
+        (br.mergeInfo.isEmpty, br.commitTime)
+      }
       .map(_.name)
       .reverse
 

src/main/scala/gitbucket/core/controller/ReleasesController.scala

@@ -79,8 +79,8 @@ trait ReleaseControllerBase extends ControllerBase {
     } yield {
       response.setHeader("Content-Disposition", s"attachment; filename=${asset.label}")
       RawData(
-        FileUtil.getMimeType(asset.label),
-        new File(getReleaseFilesDir(repository.owner, repository.name), tagName + "/" + fileId)
+        FileUtil.getSafeMimeType(asset.label),
+        new File(getReleaseFilesDir(repository.owner, repository.name), FileUtil.checkFilename(tagName + "/" + fileId))
       )
     }).getOrElse(NotFound())
   })
@@ -111,7 +111,10 @@ trait ReleaseControllerBase extends ControllerBase {
     files.foreach {
       case (fileId, fileName) =>
         val size =
-          new java.io.File(getReleaseFilesDir(repository.owner, repository.name), tagName + "/" + fileId).length
+          new File(
+            getReleaseFilesDir(repository.owner, repository.name),
+            FileUtil.checkFilename(tagName + "/" + fileId)
+          ).length
         createReleaseAsset(repository.owner, repository.name, tagName, fileId, fileName, size, loginAccount)
     }
 
@@ -153,15 +156,18 @@ trait ReleaseControllerBase extends ControllerBase {
           files.foreach {
             case (fileId, fileName) =>
               val size =
-                new java.io.File(getReleaseFilesDir(repository.owner, repository.name), tagName + "/" + fileId).length
+                new File(
+                  getReleaseFilesDir(repository.owner, repository.name),
+                  FileUtil.checkFilename(tagName + "/" + fileId)
+                ).length
               createReleaseAsset(repository.owner, repository.name, tagName, fileId, fileName, size, loginAccount)
           }
 
           assets.foreach { asset =>
             if (!files.exists { case (fileId, _) => fileId == asset.fileName }) {
-              val file = new java.io.File(
+              val file = new File(
                 getReleaseFilesDir(repository.owner, repository.name),
-                release.tag + "/" + asset.fileName
+                FileUtil.checkFilename(release.tag + "/" + asset.fileName)
               )
               FileUtils.forceDelete(file)
             }
@@ -175,7 +181,9 @@ trait ReleaseControllerBase extends ControllerBase {
   post("/:owner/:repository/releases/:tag/delete")(writableUsersOnly { repository =>
     val tagName = params("tag")
     getRelease(repository.owner, repository.name, tagName).foreach { release =>
-      FileUtils.deleteDirectory(new File(getReleaseFilesDir(repository.owner, repository.name), release.tag))
+      FileUtils.deleteDirectory(
+        new File(getReleaseFilesDir(repository.owner, repository.name), FileUtil.checkFilename(release.tag))
+      )
     }
     deleteRelease(repository.owner, repository.name, tagName)
     redirect(s"/${repository.owner}/${repository.name}/releases")

src/main/scala/gitbucket/core/controller/RepositorySettingsController.scala

@@ -229,7 +229,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
   post("/:owner/:repository/settings/collaborators")(ownerOnly { repository =>
     val collaborators = params("collaborators")
     removeCollaborators(repository.owner, repository.name)
-    collaborators.split(",").withFilter(_.nonEmpty).map { collaborator =>
+    collaborators.split(",").withFilter(_.nonEmpty).foreach { collaborator =>
       val userName :: role :: Nil = collaborator.split(":").toList
       addCollaborator(repository.owner, repository.name, userName, role)
     }

src/main/scala/gitbucket/core/controller/RepositoryViewerController.scala

@@ -1,8 +1,8 @@
 package gitbucket.core.controller
 
 import java.io.File
-import javax.servlet.http.{HttpServletRequest, HttpServletResponse}
 
+import javax.servlet.http.{HttpServletRequest, HttpServletResponse}
 import gitbucket.core.plugin.PluginRegistry
 import gitbucket.core.repo.html
 import gitbucket.core.helper
@@ -17,14 +17,24 @@ import gitbucket.core.model.{Account, CommitState, CommitStatus, WebHook}
 import gitbucket.core.service.WebHookService._
 import gitbucket.core.view
 import gitbucket.core.view.helpers
+import org.apache.commons.compress.archivers.{ArchiveEntry, ArchiveOutputStream}
+import org.apache.commons.compress.archivers.tar.{TarArchiveEntry, TarArchiveOutputStream}
+import org.apache.commons.compress.archivers.zip.{ZipArchiveEntry, ZipArchiveOutputStream}
+import org.apache.commons.compress.compressors.bzip2.BZip2CompressorOutputStream
+import org.apache.commons.compress.compressors.gzip.GzipCompressorOutputStream
+import org.apache.commons.compress.compressors.xz.XZCompressorOutputStream
+import org.apache.commons.compress.utils.IOUtils
 import org.scalatra.forms._
 import org.apache.commons.io.FileUtils
+import org.ec4j.core.model.PropertyType
 import org.eclipse.jgit.api.{ArchiveCommand, Git}
 import org.eclipse.jgit.archive.{TgzFormat, ZipFormat}
 import org.eclipse.jgit.dircache.{DirCache, DirCacheBuilder}
 import org.eclipse.jgit.errors.MissingObjectException
 import org.eclipse.jgit.lib._
 import org.eclipse.jgit.transport.{ReceiveCommand, ReceivePack}
+import org.eclipse.jgit.treewalk.TreeWalk
+import org.eclipse.jgit.treewalk.filter.PathFilter
 import org.json4s.jackson.Serialization
 import org.scalatra._
 import org.scalatra.i18n.Messages
@@ -103,7 +113,14 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     oldLineNumber: Option[Int],
     newLineNumber: Option[Int],
     content: String,
-    issueId: Option[Int]
+    issueId: Option[Int],
+    diff: Option[String]
+  )
+
+  case class TagForm(
+    commitId: String,
+    tagName: String,
+    message: Option[String]
   )
 
   val uploadForm = mapping(
@@ -138,9 +155,16 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     "oldLineNumber" -> trim(label("Old line number", optional(number()))),
     "newLineNumber" -> trim(label("New line number", optional(number()))),
     "content" -> trim(label("Content", text(required))),
-    "issueId" -> trim(label("Issue Id", optional(number())))
+    "issueId" -> trim(label("Issue Id", optional(number()))),
+    "diff" -> optional(text())
   )(CommentForm.apply)
 
+  val tagForm = mapping(
+    "commitId" -> trim(label("Commit id", text(required))),
+    "tagName" -> trim(label("Tag name", text(required))),
+    "message" -> trim(label("Message", optional(text())))
+  )(TagForm.apply)
+
   /**
    * Returns converted HTML from Markdown for preview.
    */
@@ -237,6 +261,10 @@ trait RepositoryViewerControllerBase extends ControllerBase {
 
     using(Git.open(getRepositoryDir(repository.owner, repository.name))) {
       git =>
+        def getTags(sha: String): List[String] = {
+          JGitUtil.getTagsOnCommit(git, sha)
+        }
+
         JGitUtil.getCommitLog(git, branchName, page, 30, path) match {
           case Right((logs, hasNext)) =>
             html.commits(
@@ -250,7 +278,8 @@ trait RepositoryViewerControllerBase extends ControllerBase {
               hasNext,
               hasDeveloperRole(repository.owner, repository.name, context.loginAccount),
               getStatuses,
-              getSummary
+              getSummary,
+              getTags
             )
           case Left(_) => NotFound()
         }
@@ -314,17 +343,23 @@ trait RepositoryViewerControllerBase extends ControllerBase {
       git =>
         val revCommit = JGitUtil.getRevCommitFromId(git, git.getRepository.resolve(branch))
 
-        getPathObjectId(git, path, revCommit).map { objectId =>
-          val paths = path.split("/")
-          html.editor(
-            branch = branch,
-            repository = repository,
-            pathList = paths.take(paths.size - 1).toList,
-            fileName = Some(paths.last),
-            content = JGitUtil.getContentInfo(git, path, objectId),
-            protectedBranch = protectedBranch,
-            commit = revCommit.getName
-          )
+        getPathObjectId(git, path, revCommit).map {
+          objectId =>
+            val paths = path.split("/")
+            val info = EditorConfigUtil.getEditorConfigInfo(git, branch, path)
+
+            html.editor(
+              branch = branch,
+              repository = repository,
+              pathList = paths.take(paths.size - 1).toList,
+              fileName = Some(paths.last),
+              content = JGitUtil.getContentInfo(git, path, objectId),
+              protectedBranch = protectedBranch,
+              commit = revCommit.getName,
+              newLineMode = info.newLineMode,
+              useSoftTabs = info.useSoftTabs,
+              tabSize = info.tabSize
+            )
         } getOrElse NotFound()
     }
   })
@@ -404,8 +439,10 @@ trait RepositoryViewerControllerBase extends ControllerBase {
       commit = form.commit
     )
 
+    println(form.path)
+
     redirect(
-      s"/${repository.owner}/${repository.name}/tree/${form.branch}${if (form.path.length == 0) "" else form.path}"
+      s"/${repository.owner}/${repository.name}/tree/${form.branch}${if (form.path.length == 0) "" else "/" + form.path}"
     )
   })
 
@@ -435,6 +472,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
               // Download (This route is left for backword compatibility)
               responseRawFile(git, objectId, path, repository)
             } else {
+              val info = EditorConfigUtil.getEditorConfigInfo(git, id, path)
               html.blob(
                 branch = id,
                 repository = repository,
@@ -443,7 +481,8 @@ trait RepositoryViewerControllerBase extends ControllerBase {
                 latestCommit = new JGitUtil.CommitInfo(JGitUtil.getLastModifiedCommit(git, revCommit, path)),
                 hasWritePermission = hasDeveloperRole(repository.owner, repository.name, context.loginAccount),
                 isBlame = request.paths(2) == "blame",
-                isLfsFile = isLfsFile(git, objectId)
+                isLfsFile = isLfsFile(git, objectId),
+                tabSize = info.tabSize
               )
             }
         } getOrElse NotFound()
@@ -515,7 +554,9 @@ trait RepositoryViewerControllerBase extends ControllerBase {
                 repository,
                 diffs,
                 oldCommitId,
-                hasDeveloperRole(repository.owner, repository.name, context.loginAccount)
+                hasDeveloperRole(repository.owner, repository.name, context.loginAccount),
+                flash.get("info"),
+                flash.get("error")
               )
           }
       }
@@ -562,6 +603,22 @@ trait RepositoryViewerControllerBase extends ControllerBase {
       form.newLineNumber,
       form.issueId
     )
+
+    for {
+      fileName <- form.fileName
+      diff <- form.diff
+    } {
+      saveCommitCommentDiff(
+        repository.owner,
+        repository.name,
+        id,
+        fileName,
+        form.oldLineNumber,
+        form.newLineNumber,
+        diff
+      )
+    }
+
     form.issueId match {
       case Some(issueId) =>
         recordCommentPullRequestActivity(
@@ -596,7 +653,8 @@ trait RepositoryViewerControllerBase extends ControllerBase {
       newLineNumber,
       issueId,
       hasWritePermission = hasDeveloperRole(repository.owner, repository.name, context.loginAccount),
-      repository = repository
+      repository = repository,
+      focus = true
     )
   })
 
@@ -613,6 +671,22 @@ trait RepositoryViewerControllerBase extends ControllerBase {
       form.newLineNumber,
       form.issueId
     )
+
+    for {
+      fileName <- form.fileName
+      diff <- form.diff
+    } {
+      saveCommitCommentDiff(
+        repository.owner,
+        repository.name,
+        id,
+        fileName,
+        form.oldLineNumber,
+        form.newLineNumber,
+        diff
+      )
+    }
+
     val comment = getCommitComment(repository.owner, repository.name, commentId.toString).get
     form.issueId match {
       case Some(issueId) =>
@@ -666,6 +740,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
                   enableRefsLink = true,
                   enableAnchor = true,
                   enableLineBreaks = true,
+                  enableTaskList = true,
                   hasWritePermission = true
                 )
               )
@@ -730,6 +805,29 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     html.branches(branches, hasDeveloperRole(repository.owner, repository.name, context.loginAccount), repository)
   })
 
+  /**
+   * Displays the create tag dialog.
+   */
+  get("/:owner/:repository/tag/:id")(writableUsersOnly { repository =>
+    html.tag(params("id"), repository)
+  })
+
+  /**
+   * Creates a tag.
+   */
+  post("/:owner/:repository/tag", tagForm)(writableUsersOnly { (form, repository) =>
+    using(Git.open(getRepositoryDir(repository.owner, repository.name))) { git =>
+      JGitUtil.createTag(git, form.tagName, form.message, form.commitId)
+    } match {
+      case Right(message) =>
+        flash += "info" -> message
+        redirect(s"/${repository.owner}/${repository.name}/commit/${form.commitId}")
+      case Left(message) =>
+        flash += "error" -> message
+        redirect(s"/${repository.owner}/${repository.name}/commit/${form.commitId}")
+    }
+  })
+
   /**
    * Creates a branch.
    */
@@ -772,17 +870,15 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     redirect(s"${repository.owner}/${repository.name}/releases")
   })
 
-  /**
-   * Download repository contents as an archive.
-   */
-  get("/:owner/:repository/archive/*")(referrersOnly { repository =>
-    multiParams("splat").head match {
-      case name if name.endsWith(".zip") =>
-        archiveRepository(name, ".zip", repository)
-      case name if name.endsWith(".tar.gz") =>
-        archiveRepository(name, ".tar.gz", repository)
-      case _ => BadRequest()
-    }
+  get("/:owner/:repository/archive/:name")(referrersOnly { repository =>
+    val name = params("name")
+    archiveRepository(name, repository, "")
+  })
+
+  get("/:owner/:repository/archive/*/:name")(referrersOnly { repository =>
+    val name = params("name")
+    val path = multiParams("splat").head
+    archiveRepository(name, repository, path)
   })
 
   get("/:owner/:repository/network/members")(referrersOnly { repository =>
@@ -857,7 +953,8 @@ trait RepositoryViewerControllerBase extends ControllerBase {
         }
 
         newFiles.foreach { file =>
-          val bytes = FileUtils.readFileToByteArray(new File(getTemporaryDir(session.getId), file.id))
+          val bytes =
+            FileUtils.readFileToByteArray(new File(getTemporaryDir(session.getId), FileUtil.checkFilename(file.id)))
           builder.add(
             JGitUtil.createDirCacheEntry(file.name, FileMode.REGULAR_FILE, inserter.insert(Constants.OBJ_BLOB, bytes))
           )
@@ -974,7 +1071,16 @@ trait RepositoryViewerControllerBase extends ControllerBase {
             createIssueComment(repository.owner, repository.name, commitInfo)
 
             // close issue by commit message
-            closeIssuesFromMessage(message, loginAccount.userName, repository.owner, repository.name)
+            if (branch == repository.repository.defaultBranch) {
+              closeIssuesFromMessage(message, loginAccount.userName, repository.owner, repository.name).foreach {
+                issueId =>
+                  getIssue(repository.owner, repository.name, issueId.toString).foreach { issue =>
+                    callIssuesWebHook("closed", repository, issue, baseUrl, loginAccount)
+                    PluginRegistry().getIssueHooks
+                      .foreach(_.closedByCommitComment(issue, repository, message, loginAccount))
+                  }
+              }
+            }
 
             // call post commit hook
             PluginRegistry().getReceiveHooks.foreach { hook =>
@@ -1067,26 +1173,96 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     }
   }
 
-  private def archiveRepository(name: String, suffix: String, repository: RepositoryService.RepositoryInfo): Unit = {
-    val revision = name.stripSuffix(suffix)
+  private def archiveRepository(
+    filename: String,
+    repository: RepositoryService.RepositoryInfo,
+    path: String
+  ) = {
+    def archive(revision: String, archiveFormat: String, archive: ArchiveOutputStream)(
+      entryCreator: (String, Long, Int) => ArchiveEntry
+    ): Unit = {
+      using(Git.open(getRepositoryDir(repository.owner, repository.name))) { git =>
+        val oid = git.getRepository.resolve(revision)
+        val revCommit = JGitUtil.getRevCommitFromId(git, oid)
+        val sha1 = oid.getName()
+        val repositorySuffix = (if (sha1.startsWith(revision)) sha1 else revision).replace('/', '-')
+        val pathSuffix = if (path.isEmpty) "" else '-' + path.replace('/', '-')
+        val baseName = repository.name + "-" + repositorySuffix + pathSuffix
 
-    using(Git.open(getRepositoryDir(repository.owner, repository.name))) { git =>
-      val oid = git.getRepository.resolve(revision)
-      val revCommit = JGitUtil.getRevCommitFromId(git, oid)
-      val sha1 = oid.getName()
-      val repositorySuffix = (if (sha1.startsWith(revision)) sha1 else revision).replace('/', '-')
-      val filename = repository.name + "-" + repositorySuffix + suffix
+        using(new TreeWalk(git.getRepository)) { treeWalk =>
+          treeWalk.addTree(revCommit.getTree)
+          treeWalk.setRecursive(true)
+          if (!path.isEmpty) {
+            treeWalk.setFilter(PathFilter.create(path))
+          }
+          if (treeWalk != null) {
+            while (treeWalk.next()) {
+              val entryPath =
+                if (path.isEmpty) baseName + "/" + treeWalk.getPathString
+                else path.split("/").last + treeWalk.getPathString.substring(path.length)
+              val size = JGitUtil.getFileSize(git, repository, treeWalk)
+              val mode = treeWalk.getFileMode.getBits
+              val entry: ArchiveEntry = entryCreator(entryPath, size, mode)
+              JGitUtil.openFile(git, repository, revCommit.getTree, treeWalk.getPathString) { in =>
+                archive.putArchiveEntry(entry)
+                IOUtils.copy(in, archive)
+                archive.closeArchiveEntry()
+              }
+            }
+          }
+        }
+      }
+    }
 
-      contentType = "application/octet-stream"
-      response.setHeader("Content-Disposition", s"attachment; filename=${filename}")
-      response.setBufferSize(1024 * 1024);
+    val suffix =
+      path.split("/").lastOption.collect { case x if x.length > 0 => "-" + x.replace('/', '_') }.getOrElse("")
+    val zipRe = """(.+)\.zip$""".r
+    val tarRe = """(.+)\.tar\.(gz|bz2|xz)$""".r
 
-      git.archive
-        .setFormat(suffix.tail)
-        .setPrefix(repository.name + "-" + repositorySuffix + "/")
-        .setTree(revCommit)
-        .setOutputStream(response.getOutputStream)
-        .call()
+    filename match {
+      case zipRe(revision) =>
+        response.setHeader(
+          "Content-Disposition",
+          s"attachment; filename=${repository.name}-${revision}${suffix}.zip"
+        )
+        contentType = "application/octet-stream"
+        response.setBufferSize(1024 * 1024)
+        using(new ZipArchiveOutputStream(response.getOutputStream)) { zip =>
+          archive(revision, ".zip", zip) { (path, size, mode) =>
+            val entry = new ZipArchiveEntry(path)
+            entry.setSize(size)
+            entry.setUnixMode(mode)
+            entry
+          }
+        }
+        ()
+      case tarRe(revision, compressor) =>
+        response.setHeader(
+          "Content-Disposition",
+          s"attachment; filename=${repository.name}-${revision}${suffix}.tar.${compressor}"
+        )
+        contentType = "application/octet-stream"
+        response.setBufferSize(1024 * 1024)
+        using(compressor match {
+          case "gz"  => new GzipCompressorOutputStream(response.getOutputStream)
+          case "bz2" => new BZip2CompressorOutputStream(response.getOutputStream)
+          case "xz"  => new XZCompressorOutputStream(response.getOutputStream)
+        }) { compressorOutputStream =>
+          using(new TarArchiveOutputStream(compressorOutputStream)) { tar =>
+            tar.setBigNumberMode(TarArchiveOutputStream.BIGNUMBER_STAR)
+            tar.setLongFileMode(TarArchiveOutputStream.LONGFILE_GNU)
+            tar.setAddPaxHeadersForNonAsciiNames(true)
+            archive(revision, ".tar.gz", tar) { (path, size, mode) =>
+              val entry = new TarArchiveEntry(path)
+              entry.setSize(size)
+              entry.setMode(mode)
+              entry
+            }
+          }
+        }
+        ()
+      case _ =>
+        NotFound()
     }
   }
 

src/main/scala/gitbucket/core/controller/SystemSettingsController.scala

@@ -15,6 +15,7 @@ import gitbucket.core.util.StringUtil._
 import gitbucket.core.util.SyntaxSugars._
 import gitbucket.core.util.{AdminAuthenticator, Mailer}
 import org.apache.commons.io.IOUtils
+import org.apache.commons.mail.EmailException
 import org.json4s.jackson.Serialization
 import org.scalatra._
 import org.scalatra.forms._
@@ -44,9 +45,11 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
     "gravatar" -> trim(label("Gravatar", boolean())),
     "notification" -> trim(label("Notification", boolean())),
     "activityLogLimit" -> trim(label("Limit of activity logs", optional(number()))),
-    "ssh" -> trim(label("SSH access", boolean())),
-    "sshHost" -> trim(label("SSH host", optional(text()))),
-    "sshPort" -> trim(label("SSH port", optional(number()))),
+    "ssh" -> mapping(
+      "enabled" -> trim(label("SSH access", boolean())),
+      "host" -> trim(label("SSH host", optional(text()))),
+      "port" -> trim(label("SSH port", optional(number()))),
+    )(Ssh.apply),
     "useSMTP" -> trim(label("SMTP", boolean())),
     "smtp" -> optionalIfNotChecked(
       "useSMTP",
@@ -89,13 +92,24 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
         "jwsAlgorithm" -> trim(label("Signature algorithm", optional(text())))
       )(OIDC.apply)
     ),
-    "skinName" -> trim(label("AdminLTE skin name", text(required)))
+    "skinName" -> trim(label("AdminLTE skin name", text(required))),
+    "showMailAddress" -> trim(label("Show mail address", boolean())),
+    "pluginNetworkInstall" -> trim(label("Network plugin installation", boolean())),
+    "proxy" -> optionalIfNotChecked(
+      "useProxy",
+      mapping(
+        "host" -> trim(label("Proxy host", text(required))),
+        "port" -> trim(label("Proxy port", number())),
+        "user" -> trim(label("Keystore", optional(text()))),
+        "password" -> trim(label("Keystore", optional(text())))
+      )(Proxy.apply)
+    )
   )(SystemSettings.apply).verifying { settings =>
     Vector(
-      if (settings.ssh && settings.baseUrl.isEmpty) {
+      if (settings.ssh.enabled && settings.baseUrl.isEmpty) {
         Some("baseUrl" -> "Base URL is required if SSH access is enabled.")
       } else None,
-      if (settings.ssh && settings.sshHost.isEmpty) {
+      if (settings.ssh.enabled && settings.ssh.sshHost.isEmpty) {
         Some("sshHost" -> "SSH host is required if SSH access is enabled.")
       } else None
     ).flatten
@@ -124,6 +138,7 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
     password: String,
     fullName: String,
     mailAddress: String,
+    extraMailAddresses: List[String],
     isAdmin: Boolean,
     description: Option[String],
     url: Option[String],
@@ -135,6 +150,7 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
     password: Option[String],
     fullName: String,
     mailAddress: String,
+    extraMailAddresses: List[String],
     isAdmin: Boolean,
     description: Option[String],
     url: Option[String],
@@ -166,6 +182,9 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
     "password" -> trim(label("Password", text(required, maxlength(20), password))),
     "fullName" -> trim(label("Full Name", text(required, maxlength(100)))),
     "mailAddress" -> trim(label("Mail Address", text(required, maxlength(100), uniqueMailAddress()))),
+    "extraMailAddresses" -> list(
+      trim(label("Additional Mail Address", text(maxlength(100), uniqueExtraMailAddress("userName"))))
+    ),
     "isAdmin" -> trim(label("User Type", boolean())),
     "description" -> trim(label("bio", optional(text()))),
     "url" -> trim(label("URL", optional(text(maxlength(200))))),
@@ -177,6 +196,9 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
     "password" -> trim(label("Password", optional(text(maxlength(20), password)))),
     "fullName" -> trim(label("Full Name", text(required, maxlength(100)))),
     "mailAddress" -> trim(label("Mail Address", text(required, maxlength(100), uniqueMailAddress("userName")))),
+    "extraMailAddresses" -> list(
+      trim(label("Additional Mail Address", text(maxlength(100), uniqueExtraMailAddress("userName"))))
+    ),
     "isAdmin" -> trim(label("User Type", boolean())),
     "description" -> trim(label("bio", optional(text()))),
     "url" -> trim(label("URL", optional(text(maxlength(200))))),
@@ -304,42 +326,62 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
       "Test mail has been sent to: " + form.testAddress
 
     } catch {
-      case e: Exception => "[Error] " + e.toString
+      case e: EmailException => s"[Error] ${e.getCause}"
+      case e: Exception      => s"[Error] ${e.toString}"
     }
   })
 
   get("/admin/plugins")(adminOnly {
     // Installed plugins
     val enabledPlugins = PluginRegistry().getPlugins()
+    val gitbucketVersion = GitBucketCoreModule.getVersions.asScala.last.getVersion
+    val gitbucketSemver = Semver.valueOf(gitbucketVersion)
 
-    val gitbucketVersion = Semver.valueOf(GitBucketCoreModule.getVersions.asScala.last.getVersion)
-
-    // Plugins in the local repository
-    val repositoryPlugins = PluginRepository
-      .getPlugins()
-      .filterNot { meta =>
-        enabledPlugins.exists { plugin =>
-          plugin.pluginId == meta.id &&
-          Semver.valueOf(plugin.pluginVersion).greaterThanOrEqualTo(Semver.valueOf(meta.latestVersion.version))
+    // Plugins in the remote repository
+    val repositoryPlugins = if (context.settings.pluginNetworkInstall) {
+      PluginRepository
+        .getPlugins()
+        .map {
+          meta =>
+            (meta, meta.versions.reverse.find {
+              version =>
+                val semver = Semver.valueOf(version.version)
+                gitbucketVersion == version.gitbucketVersion && !enabledPlugins.exists { plugin =>
+                  if (plugin.pluginId == meta.id) {
+                    Semver.valueOf(plugin.pluginVersion) match {
+                      case x if x.greaterThan(semver) => true
+                      case x if x.equals(semver) =>
+                        plugin.gitbucketVersion match {
+                          case None    => true
+                          case Some(x) => Semver.valueOf(x).greaterThanOrEqualTo(gitbucketSemver)
+                        }
+                      case _ => false
+                    }
+                  } else false
+                }
+            })
         }
-      }
-      .map { meta =>
-        (meta, meta.versions.reverse.find { version =>
-          gitbucketVersion.satisfies(version.range)
-        })
-      }
-      .collect {
-        case (meta, Some(version)) =>
-          new PluginInfoBase(
-            pluginId = meta.id,
-            pluginName = meta.name,
-            pluginVersion = version.version,
-            description = meta.description
-          )
-      }
+        .collect {
+          case (meta, Some(version)) =>
+            new PluginInfoBase(
+              pluginId = meta.id,
+              pluginName = meta.name,
+              pluginVersion = version.version,
+              gitbucketVersion = Some(version.gitbucketVersion),
+              description = meta.description
+            )
+        }
+    } else Nil
 
     // Merge
-    val plugins = enabledPlugins.map((_, true)) ++ repositoryPlugins.map((_, false))
+    val plugins = (enabledPlugins.map((_, true)) ++ repositoryPlugins.map((_, false)))
+      .groupBy(_._1.pluginId)
+      .map {
+        case (pluginId, plugins) =>
+          val (plugin, enabled) = plugins.head
+          (plugin, enabled, if (plugins.length > 1) plugins.last._1.pluginVersion else "")
+      }
+      .toList
 
     html.plugins(plugins, flash.get("info"))
   })
@@ -350,40 +392,45 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
     redirect("/admin/plugins")
   })
 
-  post("/admin/plugins/:pluginId/:version/_uninstall")(adminOnly {
+  post("/admin/plugins/:pluginId/_uninstall")(adminOnly {
     val pluginId = params("pluginId")
-    val version = params("version")
-    PluginRegistry()
-      .getPlugins()
-      .collect { case plugin if (plugin.pluginId == pluginId && plugin.pluginVersion == version) => plugin }
-      .foreach { _ =>
-        PluginRegistry
-          .uninstall(pluginId, request.getServletContext, loadSystemSettings(), request2Session(request).conn)
-        flash += "info" -> s"${pluginId} was uninstalled."
-      }
+
+    if (PluginRegistry().getPlugins().exists(_.pluginId == pluginId)) {
+      PluginRegistry
+        .uninstall(pluginId, request.getServletContext, loadSystemSettings(), request2Session(request).conn)
+      flash += "info" -> s"${pluginId} was uninstalled."
+    }
+
     redirect("/admin/plugins")
   })
 
   post("/admin/plugins/:pluginId/:version/_install")(adminOnly {
-    val pluginId = params("pluginId")
-    val version = params("version")
-    /// TODO!!!!
-    PluginRepository
-      .getPlugins()
-      .collect { case meta if meta.id == pluginId => (meta, meta.versions.find(_.version == version)) }
-      .foreach {
-        case (meta, version) =>
-          version.foreach { version =>
-            // TODO Install version!
-            PluginRegistry.install(
-              new java.io.File(PluginHome, s".repository/${version.file}"),
-              request.getServletContext,
-              loadSystemSettings(),
-              request2Session(request).conn
-            )
-            flash += "info" -> s"${pluginId} was installed."
-          }
-      }
+    if (context.settings.pluginNetworkInstall) {
+      val pluginId = params("pluginId")
+      val version = params("version")
+      val gitbucketVersion = GitBucketCoreModule.getVersions.asScala.last.getVersion
+
+      PluginRepository
+        .getPlugins()
+        .collectFirst {
+          case meta if meta.id == pluginId =>
+            (meta, meta.versions.find(x => x.gitbucketVersion == gitbucketVersion && x.version == version))
+        }
+        .foreach {
+          case (meta, version) =>
+            version.foreach { version =>
+              PluginRegistry.install(
+                pluginId,
+                new java.net.URL(version.url),
+                request.getServletContext,
+                loadSystemSettings(),
+                request2Session(request).conn
+              )
+              flash += "info" -> s"${pluginId}:${version.version} was installed."
+            }
+        }
+    }
+
     redirect("/admin/plugins")
   })
 
@@ -400,13 +447,13 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
   })
 
   get("/admin/users/_newuser")(adminOnly {
-    html.user(None)
+    html.user(None, Nil)
   })
 
   post("/admin/users/_newuser", newUserForm)(adminOnly { form =>
     createAccount(
       form.userName,
-      sha1(form.password),
+      pbkdf2_sha256(form.password),
       form.fullName,
       form.mailAddress,
       form.isAdmin,
@@ -414,12 +461,14 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
       form.url
     )
     updateImage(form.userName, form.fileId, false)
+    updateAccountExtraMailAddresses(form.userName, form.extraMailAddresses.filter(_ != ""))
     redirect("/admin/users")
   })
 
   get("/admin/users/:userName/_edituser")(adminOnly {
     val userName = params("userName")
-    html.user(getAccountByUserName(userName, true), flash.get("error"))
+    val extraMails = getAccountExtraMailAddresses(userName)
+    html.user(getAccountByUserName(userName, true), extraMails, flash.get("error"))
   })
 
   post("/admin/users/:name/_edituser", editUserForm)(adminOnly { form =>
@@ -444,7 +493,7 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
 
           updateAccount(
             account.copy(
-              password = form.password.map(sha1).getOrElse(account.password),
+              password = form.password.map(pbkdf2_sha256).getOrElse(account.password),
               fullName = form.fullName,
               mailAddress = form.mailAddress,
               isAdmin = form.isAdmin,
@@ -455,6 +504,7 @@ trait SystemSettingsControllerBase extends AccountManagementControllerBase {
           )
 
           updateImage(userName, form.fileId, form.clearImage)
+          updateAccountExtraMailAddresses(userName, form.extraMailAddresses.filter(_ != ""))
 
           // call hooks
           if (form.isRemoved) PluginRegistry().getAccountHooks.foreach(_.deleted(userName))

src/main/scala/gitbucket/core/controller/WikiController.scala

@@ -180,7 +180,7 @@ trait WikiControllerBase extends ControllerBase {
             loginAccount,
             form.message.getOrElse(""),
             Some(form.id)
-          ).map {
+          ).foreach {
             commitId =>
               updateLastActivityDate(repository.owner, repository.name)
               recordEditWikiPageActivity(
@@ -224,7 +224,7 @@ trait WikiControllerBase extends ControllerBase {
             loginAccount,
             form.message.getOrElse(""),
             None
-          ).map {
+          ).foreach {
             commitId =>
               updateLastActivityDate(repository.owner, repository.name)
               recordCreateWikiPageActivity(repository.owner, repository.name, loginAccount.userName, form.pageName)

src/main/scala/gitbucket/core/model/AccountExtraMailAddress.scala

@@ -0,0 +1,19 @@
+package gitbucket.core.model
+
+trait AccountExtraMailAddressComponent { self: Profile =>
+  import profile.api._
+
+  lazy val AccountExtraMailAddresses = TableQuery[AccountExtraMailAddresses]
+
+  class AccountExtraMailAddresses(tag: Tag) extends Table[AccountExtraMailAddress](tag, "ACCOUNT_EXTRA_MAIL_ADDRESS") {
+    val userName = column[String]("USER_NAME", O PrimaryKey)
+    val extraMailAddress = column[String]("EXTRA_MAIL_ADDRESS", O PrimaryKey)
+    def * =
+      (userName, extraMailAddress) <> (AccountExtraMailAddress.tupled, AccountExtraMailAddress.unapply)
+  }
+}
+
+case class AccountExtraMailAddress(
+  userName: String,
+  extraMailAddress: String
+)

src/main/scala/gitbucket/core/model/Comment.scala

@@ -1,6 +1,7 @@
 package gitbucket.core.model
+import java.util.Date
 
-trait Comment {
+sealed trait Comment {
   val commentedUserName: String
   val registeredDate: java.util.Date
 }
@@ -53,6 +54,9 @@ trait CommitCommentComponent extends TemplateComponent { self: Profile =>
     val registeredDate = column[java.util.Date]("REGISTERED_DATE")
     val updatedDate = column[java.util.Date]("UPDATED_DATE")
     val issueId = column[Option[Int]]("ISSUE_ID")
+    val originalCommitId = column[String]("ORIGINAL_COMMIT_ID")
+    val originalOldLine = column[Option[Int]]("ORIGINAL_OLD_LINE")
+    val originalNewLine = column[Option[Int]]("ORIGINAL_NEW_LINE")
     def * =
       (
         userName,
@@ -66,7 +70,10 @@ trait CommitCommentComponent extends TemplateComponent { self: Profile =>
         newLine,
         registeredDate,
         updatedDate,
-        issueId
+        issueId,
+        originalCommitId,
+        originalOldLine,
+        originalNewLine
       ) <> (CommitComment.tupled, CommitComment.unapply)
 
     def byPrimaryKey(commentId: Int) = this.commentId === commentId.bind
@@ -85,5 +92,16 @@ case class CommitComment(
   newLine: Option[Int],
   registeredDate: java.util.Date,
   updatedDate: java.util.Date,
-  issueId: Option[Int]
+  issueId: Option[Int],
+  originalCommitId: String,
+  originalOldLine: Option[Int],
+  originalNewLine: Option[Int]
+) extends Comment
+
+case class CommitComments(
+  fileName: String,
+  commentedUserName: String,
+  registeredDate: Date,
+  comments: Seq[CommitComment],
+  diff: Option[String]
 ) extends Comment

src/main/scala/gitbucket/core/model/Profile.scala

@@ -68,5 +68,6 @@ trait CoreProfile
     with DeployKeyComponent
     with ReleaseTagComponent
     with ReleaseAssetComponent
+    with AccountExtraMailAddressComponent
 
 object Profile extends CoreProfile

src/main/scala/gitbucket/core/plugin/IssueHook.scala

@@ -1,7 +1,7 @@
 package gitbucket.core.plugin
 
 import gitbucket.core.controller.Context
-import gitbucket.core.model.Issue
+import gitbucket.core.model.{Account, Issue}
 import gitbucket.core.service.RepositoryService.RepositoryInfo
 import gitbucket.core.model.Profile._
 import profile.api._
@@ -15,6 +15,19 @@ trait IssueHook {
   ): Unit = ()
   def closed(issue: Issue, repository: RepositoryInfo)(implicit session: Session, context: Context): Unit = ()
   def reopened(issue: Issue, repository: RepositoryInfo)(implicit session: Session, context: Context): Unit = ()
+  def assigned(
+    issue: Issue,
+    repository: RepositoryInfo,
+    assigner: Option[String],
+    assigned: Option[String],
+    oldAssigned: Option[String]
+  )(
+    implicit session: Session,
+    context: Context
+  ): Unit = ()
+  def closedByCommitComment(issue: Issue, repository: RepositoryInfo, message: String, pusher: Account)(
+    implicit session: Session
+  ): Unit = ()
 
 }
 

src/main/scala/gitbucket/core/plugin/PluginRegistry.scala

@@ -4,11 +4,11 @@ import java.io.{File, FilenameFilter, InputStream}
 import java.net.URLClassLoader
 import java.nio.file.{Files, Paths, StandardWatchEventKinds}
 import java.util.Base64
-import java.util.concurrent.atomic.AtomicBoolean
 import java.util.concurrent.ConcurrentLinkedQueue
 import java.util.concurrent.ConcurrentHashMap
-import javax.servlet.ServletContext
 
+import javax.servlet.ServletContext
+import com.github.zafarkhaja.semver.Version
 import gitbucket.core.controller.{Context, ControllerBase}
 import gitbucket.core.model.{Account, Issue}
 import gitbucket.core.service.ProtectedBranchService.ProtectedBranchReceiveHook
@@ -18,10 +18,12 @@ import gitbucket.core.service.SystemSettingsService.SystemSettings
 import gitbucket.core.util.SyntaxSugars._
 import gitbucket.core.util.DatabaseConfig
 import gitbucket.core.util.Directory._
+import gitbucket.core.util.HttpClientUtil._
 import io.github.gitbucket.solidbase.Solidbase
 import io.github.gitbucket.solidbase.manager.JDBCVersionManager
 import io.github.gitbucket.solidbase.model.Module
 import org.apache.commons.io.FileUtils
+import org.apache.http.client.methods.HttpGet
 import org.apache.sshd.server.Command
 import org.slf4j.LoggerFactory
 import play.twirl.api.Html
@@ -202,7 +204,6 @@ object PluginRegistry {
 
   private var watcher: PluginWatchThread = null
   private var extraWatcher: PluginWatchThread = null
-  private val initializing = new AtomicBoolean(false)
 
   /**
    * Returns the PluginRegistry singleton instance.
@@ -223,30 +224,48 @@ object PluginRegistry {
    */
   def uninstall(pluginId: String, context: ServletContext, settings: SystemSettings, conn: java.sql.Connection): Unit =
     synchronized {
-      instance
-        .getPlugins()
-        .collect { case plugin if plugin.pluginId == pluginId => plugin }
-        .foreach { plugin =>
-//      try {
-//        plugin.pluginClass.uninstall(instance, context, settings)
-//      } catch {
-//        case e: Exception =>
-//          logger.error(s"Error during uninstalling plugin: ${plugin.pluginJar.getName}", e)
-//      }
-          shutdown(context, settings)
-          plugin.pluginJar.delete()
-          instance = new PluginRegistry()
-          initialize(context, settings, conn)
-        }
+      shutdown(context, settings)
+
+      new File(PluginHome)
+        .listFiles((_: File, name: String) => {
+          name.startsWith(s"gitbucket-${pluginId}-plugin") && name.endsWith(".jar")
+        })
+        .foreach(_.delete())
+
+      instance = new PluginRegistry()
+      initialize(context, settings, conn)
     }
 
   /**
    * Install a plugin from a specified jar file.
    */
-  def install(file: File, context: ServletContext, settings: SystemSettings, conn: java.sql.Connection): Unit =
+  def install(
+    pluginId: String,
+    url: java.net.URL,
+    context: ServletContext,
+    settings: SystemSettings,
+    conn: java.sql.Connection
+  ): Unit =
     synchronized {
       shutdown(context, settings)
-      FileUtils.copyFile(file, new File(PluginHome, file.getName))
+
+      new File(PluginHome)
+        .listFiles((_: File, name: String) => {
+          name.startsWith(s"gitbucket-${pluginId}-plugin") && name.endsWith(".jar")
+        })
+        .foreach(_.delete())
+
+      withHttpClient(settings.pluginProxy) { httpClient =>
+        val httpGet = new HttpGet(url.toString)
+        try {
+          val response = httpClient.execute(httpGet)
+          val in = response.getEntity.getContent
+          FileUtils.copyToFile(in, new File(PluginHome, new File(url.getFile).getName))
+        } finally {
+          httpGet.releaseConnection()
+        }
+      }
+
       instance = new PluginRegistry()
       initialize(context, settings, conn)
     }
@@ -257,12 +276,33 @@ object PluginRegistry {
         override def accept(dir: File, name: String): Boolean = name.endsWith(".jar")
       })
       .toSeq
-      .sortBy(_.getName)
+      .sortBy(x => Version.valueOf(getPluginVersion(x.getName)))
       .reverse
   }
 
   lazy val extraPluginDir: Option[String] = Option(System.getProperty("gitbucket.pluginDir"))
 
+  def getGitBucketVersion(pluginJarFileName: String): Option[String] = {
+    val regex = ".+-gitbucket\\_(\\d+\\.\\d+\\.\\d+(-SNAPSHOT)?)-.+".r
+    pluginJarFileName match {
+      case regex(all, _) => Some(all)
+      case _             => None
+    }
+  }
+
+  def getPluginVersion(pluginJarFileName: String): String = {
+    val regex = ".+-((\\d+)\\.(\\d+)(\\.(\\d+))?(-SNAPSHOT)?)\\.jar$".r
+    pluginJarFileName match {
+      case regex(all, major, minor, _, patch, modifier) => {
+        if (patch != null) all
+        else {
+          s"${major}.${minor}.0" + (if (modifier == null) "" else modifier)
+        }
+      }
+      case _ => "0.0.0"
+    }
+  }
+
   /**
    * Initializes all installed plugins.
    */
@@ -278,6 +318,7 @@ object PluginRegistry {
     installedDir.mkdirs()
 
     val pluginJars = listPluginJars(pluginDir)
+
     val extraJars = extraPluginDir
       .map { extraDir =>
         listPluginJars(new File(extraDir))
@@ -288,9 +329,9 @@ object PluginRegistry {
       val installedJar = new File(installedDir, pluginJar.getName)
 
       FileUtils.copyFile(pluginJar, installedJar)
-
       logger.info(s"Initialize ${pluginJar.getName}")
-      val classLoader = new URLClassLoader(Array(installedJar.toURI.toURL), Thread.currentThread.getContextClassLoader)
+      val classLoader =
+        new URLClassLoader(Array(installedJar.toURI.toURL), Thread.currentThread.getContextClassLoader)
       try {
         val plugin = classLoader.loadClass("Plugin").getDeclaredConstructor().newInstance().asInstanceOf[Plugin]
         val pluginId = plugin.pluginId
@@ -304,7 +345,12 @@ object PluginRegistry {
             // Migration
             val solidbase = new Solidbase()
             solidbase
-              .migrate(conn, classLoader, DatabaseConfig.liquiDriver, new Module(plugin.pluginId, plugin.versions: _*))
+              .migrate(
+                conn,
+                classLoader,
+                DatabaseConfig.liquiDriver,
+                new Module(plugin.pluginId, plugin.versions: _*)
+              )
             conn.commit()
 
             // Check database version
@@ -323,6 +369,7 @@ object PluginRegistry {
                 pluginId = plugin.pluginId,
                 pluginName = plugin.pluginName,
                 pluginVersion = plugin.versions.last.getVersion,
+                gitbucketVersion = getGitBucketVersion(installedJar.getName),
                 description = plugin.description,
                 pluginClass = plugin,
                 pluginJar = pluginJar,
@@ -384,6 +431,7 @@ class PluginInfoBase(
   val pluginId: String,
   val pluginName: String,
   val pluginVersion: String,
+  val gitbucketVersion: Option[String],
   val description: String
 )
 
@@ -391,11 +439,12 @@ case class PluginInfo(
   override val pluginId: String,
   override val pluginName: String,
   override val pluginVersion: String,
+  override val gitbucketVersion: Option[String],
   override val description: String,
   pluginClass: Plugin,
   pluginJar: File,
   classLoader: URLClassLoader
-) extends PluginInfoBase(pluginId, pluginName, pluginVersion, description)
+) extends PluginInfoBase(pluginId, pluginName, pluginVersion, gitbucketVersion, description)
 
 class PluginWatchThread(context: ServletContext, dir: String) extends Thread with SystemSettingsService {
   import gitbucket.core.model.Profile.profile.blockingApi._

src/main/scala/gitbucket/core/plugin/PluginRepository.scala

@@ -1,25 +1,44 @@
 package gitbucket.core.plugin
 
+import gitbucket.core.controller.Context
+import gitbucket.core.util.SyntaxSugars.using
+import gitbucket.core.util.HttpClientUtil._
 import org.json4s._
-import gitbucket.core.util.Directory._
-import org.apache.commons.io.FileUtils
+import org.apache.commons.io.IOUtils
+
+import org.apache.http.client.methods.HttpGet
+import org.slf4j.LoggerFactory
 
 object PluginRepository {
+  private val logger = LoggerFactory.getLogger(getClass)
   implicit val formats = DefaultFormats
 
   def parsePluginJson(json: String): Seq[PluginMetadata] = {
     org.json4s.jackson.JsonMethods.parse(json).extract[Seq[PluginMetadata]]
   }
 
-  lazy val LocalRepositoryDir = new java.io.File(PluginHome, ".repository")
-  lazy val LocalRepositoryIndexFile = new java.io.File(LocalRepositoryDir, "plugins.json")
+  def getPlugins()(implicit context: Context): Seq[PluginMetadata] = {
+    try {
+      val url = new java.net.URL("https://plugins.gitbucket-community.org/releases/plugins.json")
 
-  def getPlugins(): Seq[PluginMetadata] = {
-    if (LocalRepositoryIndexFile.exists) {
-      parsePluginJson(FileUtils.readFileToString(LocalRepositoryIndexFile, "UTF-8"))
-    } else Nil
+      withHttpClient(context.settings.pluginProxy) { httpClient =>
+        val httpGet = new HttpGet(url.toString)
+        try {
+          val response = httpClient.execute(httpGet)
+          using(response.getEntity.getContent) { in =>
+            val str = IOUtils.toString(in, "UTF-8")
+            parsePluginJson(str)
+          }
+        } finally {
+          httpGet.releaseConnection()
+        }
+      }
+    } catch {
+      case t: Throwable =>
+        logger.warn("Failed to access to the plugin repository: " + t.toString)
+        Nil
+    }
   }
-
 }
 
 // Mapped from plugins.json
@@ -36,7 +55,5 @@ case class PluginMetadata(
 case class VersionDef(
   version: String,
   url: String,
-  range: String
-) {
-  lazy val file = url.substring(url.lastIndexOf("/") + 1)
-}
+  gitbucketVersion: String
+)

src/main/scala/gitbucket/core/service/AccessTokenService.scala

@@ -5,13 +5,13 @@ import gitbucket.core.model.Profile.profile.blockingApi._
 import gitbucket.core.model.{AccessToken, Account}
 import gitbucket.core.util.StringUtil
 
-import scala.util.Random
+import java.security.SecureRandom
 
 trait AccessTokenService {
 
   def makeAccessTokenString: String = {
     val bytes = new Array[Byte](20)
-    Random.nextBytes(bytes)
+    AccessTokenService.secureRandom.nextBytes(bytes)
     bytes.map("%02x".format(_)).mkString
   }
 
@@ -55,4 +55,6 @@ trait AccessTokenService {
 
 }
 
-object AccessTokenService extends AccessTokenService
+object AccessTokenService extends AccessTokenService {
+  private val secureRandom = new SecureRandom()
+}

src/main/scala/gitbucket/core/service/AccountService.scala

@@ -1,11 +1,11 @@
 package gitbucket.core.service
 
 import org.slf4j.LoggerFactory
-import gitbucket.core.model.{GroupMember, Account}
+import gitbucket.core.model.{Account, AccountExtraMailAddress, GroupMember}
 import gitbucket.core.model.Profile._
 import gitbucket.core.model.Profile.profile.blockingApi._
 import gitbucket.core.model.Profile.dateColumnType
-import gitbucket.core.util.{StringUtil, LDAPUtil}
+import gitbucket.core.util.{LDAPUtil, StringUtil}
 import StringUtil._
 import gitbucket.core.service.SystemSettingsService.SystemSettings
 
@@ -33,7 +33,16 @@ trait AccountService {
    * Authenticate by internal database.
    */
   private def defaultAuthentication(userName: String, password: String)(implicit s: Session) = {
+    val pbkdf2re = """^\$pbkdf2-sha256\$(\d+)\$([0-9a-zA-Z+/=]+)\$([0-9a-zA-Z+/=]+)$""".r
     getAccountByUserName(userName).collect {
+      case account if !account.isGroupAccount =>
+        account.password match {
+          case pbkdf2re(iter, salt, hash) if (pbkdf2_sha256(iter.toInt, salt, password) == hash) => Some(account)
+          case p if p == sha1(password) =>
+            updateAccount(account.copy(password = pbkdf2_sha256(password)))
+            Some(account)
+          case _ => None
+        }
       case account if (!account.isGroupAccount && account.password == sha1(password)) => Some(account)
     } getOrElse None
   }
@@ -95,6 +104,13 @@ trait AccountService {
   def getAccountByUserName(userName: String, includeRemoved: Boolean = false)(implicit s: Session): Option[Account] =
     Accounts filter (t => (t.userName === userName.bind) && (t.removed === false.bind, !includeRemoved)) firstOption
 
+  def getAccountByUserNameIgnoreCase(userName: String, includeRemoved: Boolean = false)(
+    implicit s: Session
+  ): Option[Account] =
+    Accounts filter (
+      t => (t.userName.toLowerCase === userName.toLowerCase.bind) && (t.removed === false.bind, !includeRemoved)
+    ) firstOption
+
   def getAccountsByUserNames(userNames: Set[String], knowns: Set[Account], includeRemoved: Boolean = false)(
     implicit s: Session
   ): Map[String, Account] = {
@@ -114,9 +130,16 @@ trait AccountService {
   def getAccountByMailAddress(mailAddress: String, includeRemoved: Boolean = false)(
     implicit s: Session
   ): Option[Account] =
-    Accounts filter (
-      t => (t.mailAddress.toLowerCase === mailAddress.toLowerCase.bind) && (t.removed === false.bind, !includeRemoved)
-    ) firstOption
+    (Accounts joinLeft AccountExtraMailAddresses on { case (a, e) => a.userName === e.userName })
+      .filter {
+        case (a, x) =>
+          ((a.mailAddress.toLowerCase === mailAddress.toLowerCase.bind) ||
+            (x.map { e =>
+                e.extraMailAddress.toLowerCase === mailAddress.toLowerCase.bind
+              }
+              .getOrElse(false.bind))) && (a.removed === false.bind, !includeRemoved)
+      }
+      .map { case (a, e) => a } firstOption
 
   def getAllUsers(includeRemoved: Boolean = true, includeGroups: Boolean = true)(implicit s: Session): List[Account] = {
     Accounts filter { t =>
@@ -192,6 +215,15 @@ trait AccountService {
   def updateAvatarImage(userName: String, image: Option[String])(implicit s: Session): Unit =
     Accounts.filter(_.userName === userName.bind).map(_.image.?).update(image)
 
+  def getAccountExtraMailAddresses(userName: String)(implicit s: Session): List[String] = {
+    AccountExtraMailAddresses.filter(_.userName === userName.bind).map(_.extraMailAddress) list
+  }
+
+  def updateAccountExtraMailAddresses(userName: String, mails: List[String])(implicit s: Session): Unit = {
+    AccountExtraMailAddresses.filter(_.userName === userName.bind).delete
+    mails.map(AccountExtraMailAddresses insert AccountExtraMailAddress(userName, _))
+  }
+
   def updateLastLoginDate(userName: String)(implicit s: Session): Unit =
     Accounts.filter(_.userName === userName.bind).map(_.lastLoginDate).update(currentDate)
 

src/main/scala/gitbucket/core/service/CommitsService.scala

@@ -1,9 +1,14 @@
 package gitbucket.core.service
 
+import java.io.File
+
 import gitbucket.core.model.CommitComment
 import gitbucket.core.model.Profile._
 import gitbucket.core.model.Profile.profile.blockingApi._
 import gitbucket.core.model.Profile.dateColumnType
+import gitbucket.core.util.Directory._
+import gitbucket.core.util.{FileUtil, StringUtil}
+import org.apache.commons.io.FileUtils
 
 trait CommitsService {
 
@@ -44,7 +49,10 @@ trait CommitsService {
       newLine = newLine,
       registeredDate = currentDate,
       updatedDate = currentDate,
-      issueId = issueId
+      issueId = issueId,
+      originalCommitId = commitId,
+      originalOldLine = oldLine,
+      originalNewLine = newLine
     )
 
   def updateCommitCommentPosition(commentId: Int, commitId: String, oldLine: Option[Int], newLine: Option[Int])(
@@ -68,4 +76,48 @@ trait CommitsService {
 
   def deleteCommitComment(commentId: Int)(implicit s: Session) =
     CommitComments filter (_.byPrimaryKey(commentId)) delete
+
+  def saveCommitCommentDiff(
+    owner: String,
+    repository: String,
+    commitId: String,
+    fileName: String,
+    oldLine: Option[Int],
+    newLine: Option[Int],
+    diffJson: String
+  ): Unit = {
+    val dir = new File(getDiffDir(owner, repository), FileUtil.checkFilename(commitId))
+    if (!dir.exists) {
+      dir.mkdirs()
+    }
+    val file = diffFile(dir, fileName, oldLine, newLine)
+    FileUtils.write(file, diffJson, "UTF-8")
+  }
+
+  def loadCommitCommentDiff(
+    owner: String,
+    repository: String,
+    commitId: String,
+    fileName: String,
+    oldLine: Option[Int],
+    newLine: Option[Int]
+  ): Option[String] = {
+    val dir = new File(getDiffDir(owner, repository), FileUtil.checkFilename(commitId))
+    val file = diffFile(dir, fileName, oldLine, newLine)
+    if (file.exists) {
+      Option(FileUtils.readFileToString(file, "UTF-8"))
+    } else None
+  }
+
+  private def diffFile(dir: java.io.File, fileName: String, oldLine: Option[Int], newLine: Option[Int]): File = {
+    new File(
+      dir,
+      StringUtil.sha1(
+        fileName +
+          "_oldLine:" + oldLine.map(_.toString).getOrElse("") +
+          "_newLine:" + newLine.map(_.toString).getOrElse("")
+      )
+    )
+  }
+
 }

src/main/scala/gitbucket/core/service/IssuesService.scala

@@ -6,20 +6,21 @@ import gitbucket.core.util.Implicits._
 import gitbucket.core.util.SyntaxSugars._
 import gitbucket.core.controller.Context
 import gitbucket.core.model.{
+  Account,
+  CommitState,
   Issue,
-  PullRequest,
   IssueComment,
   IssueLabel,
   Label,
-  Account,
+  PullRequest,
   Repository,
-  CommitState,
   Role
 }
 import gitbucket.core.model.Profile._
 import gitbucket.core.model.Profile.profile._
 import gitbucket.core.model.Profile.profile.blockingApi._
 import gitbucket.core.model.Profile.dateColumnType
+import gitbucket.core.plugin.PluginRegistry
 
 trait IssuesService {
   self: AccountService with RepositoryService with LabelsService with PrioritiesService with MilestonesService =>
@@ -350,9 +351,11 @@ trait IssuesService {
     implicit s: Session
   ) =
     Issues filter { t1 =>
-      repos
-        .map { case (owner, repository) => t1.byRepository(owner, repository) }
-        .foldLeft[Rep[Boolean]](false)(_ || _) &&
+      (if (repos.size == 1) {
+         t1.byRepository(repos.head._1, repos.head._2)
+       } else {
+         ((t1.userName ++ "/" ++ t1.repositoryName) inSetBind (repos.map { case (owner, repo) => s"$owner/$repo" }))
+       }) &&
       (t1.closed === (condition.state == "closed").bind) &&
       (t1.milestoneId.? isEmpty, condition.milestone == Some(None)) &&
       (t1.priorityId.? isEmpty, condition.priority == Some(None)) &&
@@ -511,20 +514,24 @@ trait IssuesService {
     assignedUserName: Option[String],
     insertComment: Boolean = false
   )(implicit context: Context, s: Session): Int = {
+    val oldAssigned = getIssue(owner, repository, s"${issueId}").get.assignedUserName
+    val assigned = assignedUserName
+    val assigner = context.loginAccount.map(_.userName)
     if (insertComment) {
-      val oldAssigned = getIssue(owner, repository, s"${issueId}").get.assignedUserName.getOrElse("Not assigned")
-      val assigned = assignedUserName.getOrElse("Not assigned")
       IssueComments insert IssueComment(
         userName = owner,
         repositoryName = repository,
         issueId = issueId,
         action = "assign",
-        commentedUserName = context.loginAccount.map(_.userName).getOrElse("Unknown user"),
-        content = s"${oldAssigned}:${assigned}",
+        commentedUserName = assigner.getOrElse("Unknown user"),
+        content = s"""${oldAssigned.getOrElse("Not assigned")}:${assigned.getOrElse("Not assigned")}""",
         registeredDate = currentDate,
         updatedDate = currentDate
       )
     }
+    for (issue <- getIssue(owner, repository, issueId.toString); repo <- getRepository(owner, repository)) {
+      PluginRegistry().getIssueHooks.foreach(_.assigned(issue, repo, assigner, assigned, oldAssigned))
+    }
     Issues
       .filter(_.byPrimaryKey(owner, repository, issueId))
       .map(t => (t.assignedUserName ?, t.updatedDate))
@@ -625,7 +632,7 @@ trait IssuesService {
    * @param query the keywords separated by whitespace.
    * @return issues with comment count and matched content of issue or comment
    */
-  def searchIssuesByKeyword(owner: String, repository: String, query: String)(
+  def searchIssuesByKeyword(owner: String, repository: String, query: String, pullRequest: Boolean)(
     implicit s: Session
   ): List[(Issue, Int, String)] = {
     //import slick.driver.JdbcDriver.likeEncode
@@ -633,7 +640,9 @@ trait IssuesService {
 
     // Search Issue
     val issues = Issues
-      .filter(_.byRepository(owner, repository))
+      .filter { t =>
+        t.byRepository(owner, repository) && t.pullRequest === pullRequest.bind
+      }
       .join(IssueOutline)
       .on {
         case (t1, t2) =>
@@ -668,11 +677,12 @@ trait IssuesService {
       }
       .filter {
         case ((t1, t2), t3) =>
-          keywords
-            .map { query =>
-              t1.content.toLowerCase like (s"%${likeEncode(query)}%", '^')
-            }
-            .reduceLeft(_ && _)
+          t2.pullRequest === pullRequest.bind &&
+            keywords
+              .map { query =>
+                t1.content.toLowerCase like (s"%${likeEncode(query)}%", '^')
+              }
+              .reduceLeft(_ && _)
       }
       .map {
         case ((t1, t2), t3) =>
@@ -683,7 +693,7 @@ trait IssuesService {
       .union(comments)
       .sortBy {
         case (issue, commentId, _, _) =>
-          issue.issueId -> commentId
+          issue.issueId.desc -> commentId
       }
       .list
       .splitWith {
@@ -700,11 +710,12 @@ trait IssuesService {
 
   def closeIssuesFromMessage(message: String, userName: String, owner: String, repository: String)(
     implicit s: Session
-  ): Unit = {
-    extractCloseId(message).foreach { issueId =>
-      for (issue <- getIssue(owner, repository, issueId) if !issue.closed) {
+  ): Seq[Int] = {
+    extractCloseId(message).flatMap { issueId =>
+      for (issue <- getIssue(owner, repository, issueId) if !issue.closed) yield {
         createComment(owner, repository, userName, issue.issueId, "Close", "close")
         updateClosed(owner, repository, issue.issueId, true)
+        issue.issueId
       }
     }
   }

src/main/scala/gitbucket/core/service/MergeService.scala

@@ -196,7 +196,7 @@ object MergeService {
       refUpdate.setNewObjectId(newObjectId)
       refUpdate.setForceUpdate(force)
       refUpdate.setRefLogIdent(committer)
-      refLogMessage.map(refUpdate.setRefLogMessage(_, true))
+      refLogMessage.foreach(refUpdate.setRefLogMessage(_, true))
       refUpdate.update()
     }
   }

src/main/scala/gitbucket/core/service/PullRequestService.scala

@@ -1,6 +1,6 @@
 package gitbucket.core.service
 
-import gitbucket.core.model.{Issue, PullRequest, CommitStatus, CommitState, CommitComment}
+import gitbucket.core.model.{CommitComments => _, Session => _, _}
 import gitbucket.core.model.Profile._
 import gitbucket.core.model.Profile.profile.blockingApi._
 import difflib.{Delta, DiffUtils}
@@ -12,6 +12,7 @@ import gitbucket.core.util.JGitUtil.{CommitInfo, DiffInfo}
 import gitbucket.core.view
 import gitbucket.core.view.helpers
 import org.eclipse.jgit.api.Git
+
 import scala.collection.JavaConverters._
 
 trait PullRequestService { self: IssuesService with CommitsService =>
@@ -115,6 +116,24 @@ trait PullRequestService { self: IssuesService with CommitsService =>
       .map { case (t1, t2) => t1 }
       .list
 
+  def getPullRequestsByBranch(userName: String, repositoryName: String, branch: String, closed: Option[Boolean])(
+    implicit s: Session
+  ): List[PullRequest] =
+    PullRequests
+      .join(Issues)
+      .on { (t1, t2) =>
+        t1.byPrimaryKey(t2.userName, t2.repositoryName, t2.issueId)
+      }
+      .filter {
+        case (t1, t2) =>
+          (t1.requestUserName === userName.bind) &&
+            (t1.requestRepositoryName === repositoryName.bind) &&
+            (t1.branch === branch.bind) &&
+            (t2.closed === closed.get.bind, closed.isDefined)
+      }
+      .map { case (t1, t2) => t1 }
+      .list
+
   /**
    * for repository viewer.
    * 1. find pull request from `branch` to other branch on same repository
@@ -162,9 +181,9 @@ trait PullRequestService { self: IssuesService with CommitsService =>
         // Collect comment positions
         val positions = getCommitComments(pullreq.userName, pullreq.repositoryName, pullreq.commitIdTo, true)
           .collect {
-            case CommitComment(_, _, _, commentId, _, _, Some(file), None, Some(newLine), _, _, _) =>
+            case CommitComment(_, _, _, commentId, _, _, Some(file), None, Some(newLine), _, _, _, _, _, _) =>
               (file, commentId, Right(newLine))
-            case CommitComment(_, _, _, commentId, _, _, Some(file), Some(oldLine), None, _, _, _) =>
+            case CommitComment(_, _, _, commentId, _, _, Some(file), Some(oldLine), None, _, _, _, _, _, _) =>
               (file, commentId, Left(oldLine))
           }
           .groupBy { case (file, _, _) => file }
@@ -314,11 +333,57 @@ trait PullRequestService { self: IssuesService with CommitsService =>
           helpers.date(commit1.commitTime) == view.helpers.date(commit2.commitTime)
         }
 
+      // TODO Isolate to an another method?
       val diffs = JGitUtil.getDiffs(newGit, Some(oldId.getName), newId.getName, true, false)
 
       (commits, diffs)
     }
 
+  def getPullRequestComments(userName: String, repositoryName: String, issueId: Int, commits: Seq[CommitInfo])(
+    implicit s: Session
+  ): Seq[Comment] = {
+    (commits
+      .map(commit => getCommitComments(userName, repositoryName, commit.id, true))
+      .flatten ++ getComments(userName, repositoryName, issueId))
+      .groupBy {
+        case x: IssueComment                        => (Some(x.commentId), None, None, None)
+        case x: CommitComment if x.fileName.isEmpty => (Some(x.commentId), None, None, None)
+        case x: CommitComment                       => (None, x.fileName, x.originalOldLine, x.originalNewLine)
+        case x                                      => throw new MatchError(x)
+      }
+      .toSeq
+      .map {
+        // Normal comment
+        case ((Some(_), _, _, _), comments) =>
+          comments.head
+        // Comment on a specific line of a commit
+        case ((None, Some(fileName), oldLine, newLine), comments) =>
+          gitbucket.core.model.CommitComments(
+            fileName = fileName,
+            commentedUserName = comments.head.commentedUserName,
+            registeredDate = comments.head.registeredDate,
+            comments = comments.map(_.asInstanceOf[CommitComment]),
+            diff = loadCommitCommentDiff(
+              userName,
+              repositoryName,
+              comments.head.asInstanceOf[CommitComment].originalCommitId,
+              fileName,
+              oldLine,
+              newLine
+            )
+          )
+      }
+      .sortWith(_.registeredDate before _.registeredDate)
+  }
+
+  def markMergeAndClosePullRequest(userName: String, owner: String, repository: String, pull: PullRequest)(
+    implicit s: Session
+  ): Unit = {
+    createComment(owner, repository, userName, pull.issueId, "Merged by user", "merge")
+    createComment(owner, repository, userName, pull.issueId, "Close", "close")
+    updateClosed(owner, repository, pull.issueId, true)
+  }
+
 }
 
 object PullRequestService {

src/main/scala/gitbucket/core/service/RepositorySearchService.scala

@@ -14,18 +14,21 @@ import gitbucket.core.model.Profile.profile.blockingApi._
 trait RepositorySearchService { self: IssuesService =>
   import RepositorySearchService._
 
-  def countIssues(owner: String, repository: String, query: String)(implicit session: Session): Int =
-    searchIssuesByKeyword(owner, repository, query).length
+  def countIssues(owner: String, repository: String, query: String, pullRequest: Boolean)(
+    implicit session: Session
+  ): Int =
+    searchIssuesByKeyword(owner, repository, query, pullRequest).length
 
-  def searchIssues(owner: String, repository: String, query: String)(
+  def searchIssues(owner: String, repository: String, query: String, pullRequest: Boolean)(
     implicit session: Session
   ): List[IssueSearchResult] =
-    searchIssuesByKeyword(owner, repository, query).map {
+    searchIssuesByKeyword(owner, repository, query, pullRequest).map {
       case (issue, commentCount, content) =>
         IssueSearchResult(
           issue.issueId,
           issue.isPullRequest,
           issue.title,
+          issue.closed,
           issue.openedUserName,
           issue.registeredDate,
           commentCount,
@@ -142,6 +145,7 @@ object RepositorySearchService {
     issueId: Int,
     isPullRequest: Boolean,
     title: String,
+    isClosed: Boolean,
     openedUserName: String,
     registeredDate: java.util.Date,
     commentCount: Int,

src/main/scala/gitbucket/core/service/RepositoryService.scala

@@ -67,7 +67,7 @@ trait RepositoryService { self: AccountService =>
     getAccountByUserName(newUserName).foreach { account =>
       (Repositories filter { t =>
         t.byRepository(oldUserName, oldRepositoryName)
-      } firstOption).map { repository =>
+      } firstOption).foreach { repository =>
         Repositories insert repository.copy(userName = newUserName, repositoryName = newRepositoryName)
 
         val webHooks = RepositoryWebHooks.filter(_.byRepository(oldUserName, oldRepositoryName)).list
@@ -313,28 +313,33 @@ trait RepositoryService { self: AccountService =>
    * @return the repository information
    */
   def getRepository(userName: String, repositoryName: String)(implicit s: Session): Option[RepositoryInfo] = {
-    (Repositories filter { t =>
-      t.byRepository(userName, repositoryName)
-    } firstOption) map { repository =>
-      // for getting issue count and pull request count
-      val issues = Issues
-        .filter { t =>
-          t.byRepository(repository.userName, repository.repositoryName) && (t.closed === false.bind)
-        }
-        .map(_.pullRequest)
-        .list
+    (Repositories
+      .join(Accounts)
+      .on(_.userName === _.userName)
+      .filter {
+        case (t1, t2) =>
+          t1.byRepository(userName, repositoryName) && t2.removed === false.bind
+    } firstOption) map {
+      case (repository, account) =>
+        // for getting issue count and pull request count
+        val issues = Issues
+          .filter { t =>
+            t.byRepository(repository.userName, repository.repositoryName) && (t.closed === false.bind)
+          }
+          .map(_.pullRequest)
+          .list
 
-      new RepositoryInfo(
-        JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName),
-        repository,
-        issues.count(_ == false),
-        issues.count(_ == true),
-        getForkedCount(
-          repository.originUserName.getOrElse(repository.userName),
-          repository.originRepositoryName.getOrElse(repository.repositoryName)
-        ),
-        getRepositoryManagers(repository.userName)
-      )
+        new RepositoryInfo(
+          JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName),
+          repository,
+          issues.count(_ == false),
+          issues.count(_ == true),
+          getForkedCount(
+            repository.originUserName.getOrElse(repository.userName),
+            repository.originRepositoryName.getOrElse(repository.repositoryName)
+          ),
+          getRepositoryManagers(repository.userName, repository.repositoryName)
+        )
     }
   }
 
@@ -366,6 +371,10 @@ trait RepositoryService { self: AccountService =>
       .list
   }
 
+  /**
+   * Returns the list of repositories which are owned by the specified user.
+   * This list includes group repositories if the specified user is a member of the group.
+   */
   def getUserRepositories(userName: String, withoutPhysicalInfo: Boolean = false)(
     implicit s: Session
   ): List[RepositoryInfo] = {
@@ -383,29 +392,7 @@ trait RepositoryService { self: AccountService =>
       }
       .sortBy(_.lastActivityDate desc)
       .list
-      .map { repository =>
-        new RepositoryInfo(
-          if (withoutPhysicalInfo) {
-            new JGitUtil.RepositoryInfo(repository.userName, repository.repositoryName)
-          } else {
-            JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName)
-          },
-          repository,
-          if (withoutPhysicalInfo) {
-            -1
-          } else {
-            getForkedCount(
-              repository.originUserName.getOrElse(repository.userName),
-              repository.originRepositoryName.getOrElse(repository.repositoryName)
-            )
-          },
-          if (withoutPhysicalInfo) {
-            Nil
-          } else {
-            getRepositoryManagers(repository.userName)
-          }
-        )
-      }
+      .map(createRepositoryInfo(_, withoutPhysicalInfo))
   }
 
   /**
@@ -425,21 +412,35 @@ trait RepositoryService { self: AccountService =>
   )(implicit s: Session): List[RepositoryInfo] = {
     (loginAccount match {
       // for Administrators
-      case Some(x) if (x.isAdmin) => Repositories
+      case Some(x) if (x.isAdmin) =>
+        Repositories
+          .join(Accounts)
+          .on(_.userName === _.userName)
+          .filter { case (t1, t2) => t2.removed === false.bind }
+          .map { case (t1, t2) => t1 }
       // for Normal Users
       case Some(x) if (!x.isAdmin) =>
-        Repositories filter { t =>
-          (t.isPrivate === false.bind) || (t.userName === x.userName) ||
-          (t.userName in GroupMembers.filter(_.userName === x.userName.bind).map(_.groupName)) ||
-          (Collaborators.filter { t2 =>
-            t2.byRepository(t.userName, t.repositoryName) &&
-            ((t2.collaboratorName === x.userName.bind) || (t2.collaboratorName in GroupMembers
-              .filter(_.userName === x.userName.bind)
-              .map(_.groupName)))
-          } exists)
-        }
+        Repositories
+          .join(Accounts)
+          .on(_.userName === _.userName)
+          .filter {
+            case (t1, t2) =>
+              (t2.removed === false.bind) && ((t1.isPrivate === false.bind) || (t1.userName === x.userName) ||
+                (t1.userName in GroupMembers.filter(_.userName === x.userName.bind).map(_.groupName)) ||
+                (Collaborators.filter { t3 =>
+                  t3.byRepository(t1.userName, t1.repositoryName) &&
+                  ((t3.collaboratorName === x.userName.bind) ||
+                  (t3.collaboratorName in GroupMembers.filter(_.userName === x.userName.bind).map(_.groupName)))
+                } exists))
+          }
+          .map { case (t1, t2) => t1 }
       // for Guests
-      case None => Repositories filter (_.isPrivate === false.bind)
+      case None =>
+        Repositories
+          .join(Accounts)
+          .on(_.userName === _.userName)
+          .filter { case (t1, t2) => t1.isPrivate === false.bind && t2.removed === false.bind }
+          .map { case (t1, t2) => t1 }
     }).filter { t =>
         repositoryUserName.map { userName =>
           t.userName === userName.bind
@@ -447,37 +448,45 @@ trait RepositoryService { self: AccountService =>
       }
       .sortBy(_.lastActivityDate desc)
       .list
-      .map { repository =>
-        new RepositoryInfo(
-          if (withoutPhysicalInfo) {
-            new JGitUtil.RepositoryInfo(repository.userName, repository.repositoryName)
-          } else {
-            JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName)
-          },
-          repository,
-          if (withoutPhysicalInfo) {
-            -1
-          } else {
-            getForkedCount(
-              repository.originUserName.getOrElse(repository.userName),
-              repository.originRepositoryName.getOrElse(repository.repositoryName)
-            )
-          },
-          if (withoutPhysicalInfo) {
-            Nil
-          } else {
-            getRepositoryManagers(repository.userName)
-          }
-        )
-      }
+      .map(createRepositoryInfo(_, withoutPhysicalInfo))
   }
 
-  private def getRepositoryManagers(userName: String)(implicit s: Session): Seq[String] =
-    if (getAccountByUserName(userName).exists(_.isGroupAccount)) {
-      getGroupMembers(userName).collect { case x if (x.isManager) => x.userName }
-    } else {
-      Seq(userName)
-    }
+  private def createRepositoryInfo(repository: Repository, withoutPhysicalInfo: Boolean = false)(
+    implicit s: Session
+  ): RepositoryInfo = {
+    new RepositoryInfo(
+      if (withoutPhysicalInfo) {
+        new JGitUtil.RepositoryInfo(repository.userName, repository.repositoryName)
+      } else {
+        JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName)
+      },
+      repository,
+      if (withoutPhysicalInfo) {
+        -1
+      } else {
+        getForkedCount(
+          repository.originUserName.getOrElse(repository.userName),
+          repository.originRepositoryName.getOrElse(repository.repositoryName)
+        )
+      },
+      if (withoutPhysicalInfo) {
+        Nil
+      } else {
+        getRepositoryManagers(repository.userName, repository.repositoryName)
+      }
+    )
+  }
+
+  /**
+   * TODO It seems to be able to improve performance. For example, RequestCache can be used for getAccountByUserName call.
+   */
+  private def getRepositoryManagers(userName: String, repositoryName: String)(implicit s: Session): Seq[String] = {
+    (if (getAccountByUserName(userName).exists(_.isGroupAccount)) {
+       getGroupMembers(userName).collect { case x if (x.isManager) => x.userName }
+     } else {
+       Seq(userName)
+     }) ++ getCollaboratorUserNames(userName, repositoryName, Seq(Role.ADMIN))
+  }
 
   /**
    * Updates the last activity date of the repository.
@@ -750,7 +759,7 @@ object RepositoryService {
   def httpUrl(owner: String, name: String)(implicit context: Context): String =
     s"${context.baseUrl}/git/${owner}/${name}.git"
   def sshUrl(owner: String, name: String)(implicit context: Context): Option[String] =
-    if (context.settings.ssh) {
+    if (context.settings.ssh.enabled) {
       context.settings.sshAddress.map { x =>
         s"ssh://${x.genericUser}@${x.host}:${x.port}/${owner}/${name}.git"
       }

src/main/scala/gitbucket/core/service/SystemSettingsService.scala

@@ -1,7 +1,6 @@
 package gitbucket.core.service
 
 import javax.servlet.http.HttpServletRequest
-
 import com.nimbusds.jose.JWSAlgorithm
 import com.nimbusds.oauth2.sdk.auth.Secret
 import com.nimbusds.oauth2.sdk.id.{ClientID, Issuer}
@@ -24,9 +23,9 @@ trait SystemSettingsService {
       props.setProperty(Gravatar, settings.gravatar.toString)
       props.setProperty(Notification, settings.notification.toString)
       settings.activityLogLimit.foreach(x => props.setProperty(ActivityLogLimit, x.toString))
-      props.setProperty(Ssh, settings.ssh.toString)
-      settings.sshHost.foreach(x => props.setProperty(SshHost, x.trim))
-      settings.sshPort.foreach(x => props.setProperty(SshPort, x.toString))
+      props.setProperty(SshEnabled, settings.ssh.enabled.toString)
+      settings.ssh.sshHost.foreach(x => props.setProperty(SshHost, x.trim))
+      settings.ssh.sshPort.foreach(x => props.setProperty(SshPort, x.toString))
       props.setProperty(UseSMTP, settings.useSMTP.toString)
       if (settings.useSMTP) {
         settings.smtp.foreach { smtp =>
@@ -42,7 +41,7 @@ trait SystemSettingsService {
       }
       props.setProperty(LdapAuthentication, settings.ldapAuthentication.toString)
       if (settings.ldapAuthentication) {
-        settings.ldap.map { ldap =>
+        settings.ldap.foreach { ldap =>
           props.setProperty(LdapHost, ldap.host)
           ldap.port.foreach(x => props.setProperty(LdapPort, x.toString))
           ldap.bindDN.foreach(x => props.setProperty(LdapBindDN, x))
@@ -59,16 +58,29 @@ trait SystemSettingsService {
       }
       props.setProperty(OidcAuthentication, settings.oidcAuthentication.toString)
       if (settings.oidcAuthentication) {
-        settings.oidc.map { oidc =>
+        settings.oidc.foreach { oidc =>
           props.setProperty(OidcIssuer, oidc.issuer.getValue)
           props.setProperty(OidcClientId, oidc.clientID.getValue)
           props.setProperty(OidcClientSecret, oidc.clientSecret.getValue)
-          oidc.jwsAlgorithm.map { x =>
+          oidc.jwsAlgorithm.foreach { x =>
             props.setProperty(OidcJwsAlgorithm, x.getName)
           }
         }
       }
       props.setProperty(SkinName, settings.skinName.toString)
+      props.setProperty(ShowMailAddress, settings.showMailAddress.toString)
+      props.setProperty(PluginNetworkInstall, settings.pluginNetworkInstall.toString)
+      settings.pluginProxy.foreach { proxy =>
+        props.setProperty(PluginProxyHost, proxy.host)
+        props.setProperty(PluginProxyPort, proxy.port.toString)
+        proxy.user.foreach { user =>
+          props.setProperty(PluginProxyUser, user)
+        }
+        proxy.password.foreach { password =>
+          props.setProperty(PluginProxyPassword, password)
+        }
+      }
+
       using(new java.io.FileOutputStream(GitBucketConf)) { out =>
         props.store(out, null)
       }
@@ -91,9 +103,11 @@ trait SystemSettingsService {
         getValue(props, Gravatar, false),
         getValue(props, Notification, false),
         getOptionValue[Int](props, ActivityLogLimit, None),
-        getValue(props, Ssh, false),
-        getOptionValue[String](props, SshHost, None).map(_.trim),
-        getOptionValue(props, SshPort, Some(DefaultSshPort)),
+        Ssh(
+          getValue(props, SshEnabled, false),
+          getOptionValue[String](props, SshHost, None).map(_.trim),
+          getOptionValue(props, SshPort, Some(DefaultSshPort))
+        ),
         getValue(props, UseSMTP, getValue(props, Notification, false)), // handle migration scenario from only notification to useSMTP
         if (getValue(props, UseSMTP, getValue(props, Notification, false))) {
           Some(
@@ -108,9 +122,7 @@ trait SystemSettingsService {
               getOptionValue(props, SmtpFromName, None)
             )
           )
-        } else {
-          None
-        },
+        } else None,
         getValue(props, LdapAuthentication, false),
         if (getValue(props, LdapAuthentication, false)) {
           Some(
@@ -129,9 +141,7 @@ trait SystemSettingsService {
               getOptionValue(props, LdapKeystore, None)
             )
           )
-        } else {
-          None
-        },
+        } else None,
         getValue(props, OidcAuthentication, false),
         if (getValue(props, OidcAuthentication, false)) {
           Some(
@@ -145,7 +155,19 @@ trait SystemSettingsService {
         } else {
           None
         },
-        getValue(props, SkinName, "skin-blue")
+        getValue(props, SkinName, "skin-blue"),
+        getValue(props, ShowMailAddress, false),
+        getValue(props, PluginNetworkInstall, false),
+        if (getValue(props, PluginProxyHost, "").nonEmpty) {
+          Some(
+            Proxy(
+              getValue(props, PluginProxyHost, ""),
+              getValue(props, PluginProxyPort, 8080),
+              getOptionValue(props, PluginProxyUser, None),
+              getOptionValue(props, PluginProxyPassword, None)
+            )
+          )
+        } else None
       )
     }
   }
@@ -155,6 +177,8 @@ trait SystemSettingsService {
 object SystemSettingsService {
   import scala.reflect.ClassTag
 
+  private val HttpProtocols = Vector("http", "https")
+
   case class SystemSettings(
     baseUrl: Option[String],
     information: Option[String],
@@ -164,31 +188,47 @@ object SystemSettingsService {
     gravatar: Boolean,
     notification: Boolean,
     activityLogLimit: Option[Int],
-    ssh: Boolean,
-    sshHost: Option[String],
-    sshPort: Option[Int],
+    ssh: Ssh,
     useSMTP: Boolean,
     smtp: Option[Smtp],
     ldapAuthentication: Boolean,
     ldap: Option[Ldap],
     oidcAuthentication: Boolean,
     oidc: Option[OIDC],
-    skinName: String
+    skinName: String,
+    showMailAddress: Boolean,
+    pluginNetworkInstall: Boolean,
+    pluginProxy: Option[Proxy]
   ) {
 
     def baseUrl(request: HttpServletRequest): String =
-      baseUrl.fold {
-        val url = request.getRequestURL.toString
-        val len = url.length - (request.getRequestURI.length - request.getContextPath.length)
-        url.substring(0, len).stripSuffix("/")
-      }(_.stripSuffix("/"))
+      baseUrl.getOrElse(parseBaseUrl(request)).stripSuffix("/")
 
-    def sshAddress: Option[SshAddress] = sshHost.collect {
-      case host if ssh =>
-        SshAddress(host, sshPort.getOrElse(DefaultSshPort), "git")
+    def parseBaseUrl(req: HttpServletRequest): String = {
+      val url = req.getRequestURL.toString
+      val path = req.getRequestURI
+      val contextPath = req.getContextPath
+      val len = url.length - path.length + contextPath.length
+
+      val base = url.substring(0, len).stripSuffix("/")
+      Option(req.getHeader("X-Forwarded-Proto"))
+        .map(_.toLowerCase())
+        .filter(HttpProtocols.contains)
+        .fold(base)(_ + base.dropWhile(_ != ':'))
+    }
+
+    def sshAddress: Option[SshAddress] = ssh.sshHost.collect {
+      case host if ssh.enabled =>
+        SshAddress(host, ssh.sshPort.getOrElse(DefaultSshPort), "git")
     }
   }
 
+  case class Ssh(
+    enabled: Boolean,
+    sshHost: Option[String],
+    sshPort: Option[Int]
+  )
+
   case class Ldap(
     host: String,
     port: Option[Int],
@@ -226,6 +266,13 @@ object SystemSettingsService {
     fromName: Option[String]
   )
 
+  case class Proxy(
+    host: String,
+    port: Int,
+    user: Option[String],
+    password: Option[String],
+  )
+
   case class SshAddress(host: String, port: Int, genericUser: String)
 
   case class Lfs(serverUrl: Option[String])
@@ -242,7 +289,7 @@ object SystemSettingsService {
   private val Gravatar = "gravatar"
   private val Notification = "notification"
   private val ActivityLogLimit = "activity_log_limit"
-  private val Ssh = "ssh"
+  private val SshEnabled = "ssh"
   private val SshHost = "ssh.host"
   private val SshPort = "ssh.port"
   private val UseSMTP = "useSMTP"
@@ -273,6 +320,12 @@ object SystemSettingsService {
   private val OidcClientSecret = "oidc.client_secret"
   private val OidcJwsAlgorithm = "oidc.jws_algorithm"
   private val SkinName = "skinName"
+  private val ShowMailAddress = "showMailAddress"
+  private val PluginNetworkInstall = "plugin.networkInstall"
+  private val PluginProxyHost = "plugin.proxy.host"
+  private val PluginProxyPort = "plugin.proxy.port"
+  private val PluginProxyUser = "plugin.proxy.user"
+  private val PluginProxyPassword = "plugin.proxy.password"
 
   private def getValue[A: ClassTag](props: java.util.Properties, key: String, default: A): A = {
     getSystemProperty(key).getOrElse(getEnvironmentVariable(key).getOrElse {

src/main/scala/gitbucket/core/servlet/GitRepositoryServlet.scala

@@ -296,13 +296,34 @@ class CommitLogHook(owner: String, repository: String, pusher: String, baseUrl:
                   createIssueComment(owner, repository, commit)
                   // close issues
                   if (refName(1) == "heads" && branchName == defaultBranch && command.getType == ReceiveCommand.Type.UPDATE) {
-                    closeIssuesFromMessage(commit.fullMessage, pusher, owner, repository)
+                    getAccountByUserName(pusher).foreach { pusherAccount =>
+                      closeIssuesFromMessage(commit.fullMessage, pusher, owner, repository).foreach { issueId =>
+                        getIssue(owner, repository, issueId.toString).foreach { issue =>
+                          callIssuesWebHook("closed", repositoryInfo, issue, baseUrl, pusherAccount)
+                          PluginRegistry().getIssueHooks
+                            .foreach(_.closedByCommitComment(issue, repositoryInfo, commit.fullMessage, pusherAccount))
+                        }
+                      }
+                    }
                   }
                 }
                 Some(commit)
               } else None
             }
 
+            // set PR as merged
+            val pulls = getPullRequestsByBranch(owner, repository, branchName, Some(false))
+            pulls.foreach { pull =>
+              if (commits.find { c =>
+                    c.id == pull.commitIdTo
+                  }.isDefined) {
+                markMergeAndClosePullRequest(pusher, owner, repository, pull)
+                getAccountByUserName(pusher).foreach { pusherAccount =>
+                  callPullRequestWebHook("closed", repositoryInfo, pull.issueId, baseUrl, pusherAccount)
+                }
+              }
+            }
+
             // record activity
             if (refName(1) == "heads") {
               command.getType match {
@@ -326,7 +347,7 @@ class CommitLogHook(owner: String, repository: String, pusher: String, baseUrl:
                 case ReceiveCommand.Type.CREATE | ReceiveCommand.Type.UPDATE |
                     ReceiveCommand.Type.UPDATE_NONFASTFORWARD =>
                   updatePullRequests(owner, repository, branchName)
-                  getAccountByUserName(pusher).map { pusherAccount =>
+                  getAccountByUserName(pusher).foreach { pusherAccount =>
                     callPullRequestWebHookByRequestBranch(
                       "synchronize",
                       repositoryInfo,
@@ -418,7 +439,7 @@ class WikiCommitHook(owner: String, repository: String, pusher: String, baseUrl:
             }
           }
 
-          commitIds.map {
+          commitIds.foreach {
             case (oldCommitId, newCommitId) =>
               val commits = using(Git.open(Directory.getWikiRepositoryDir(owner, repository))) { git =>
                 JGitUtil.getCommitLog(git, oldCommitId, newCommitId).flatMap { commit =>

src/main/scala/gitbucket/core/servlet/InitializeListener.scala

@@ -5,7 +5,7 @@ import java.io.{File, FileOutputStream}
 import akka.event.Logging
 import com.typesafe.config.ConfigFactory
 import gitbucket.core.GitBucketCoreModule
-import gitbucket.core.plugin.{PluginRegistry, PluginRepository}
+import gitbucket.core.plugin.PluginRegistry
 import gitbucket.core.service.{ActivityService, SystemSettingsService}
 import gitbucket.core.util.DatabaseConfig
 import gitbucket.core.util.Directory._
@@ -20,7 +20,6 @@ import org.apache.commons.io.{FileUtils, IOUtils}
 import org.slf4j.LoggerFactory
 import akka.actor.{Actor, ActorSystem, Props}
 import com.typesafe.akka.extension.quartz.QuartzSchedulerExtension
-import com.github.zafarkhaja.semver.{Version => Semver}
 
 import scala.collection.JavaConverters._
 
@@ -136,40 +135,30 @@ class InitializeListener extends ServletContextListener with SystemSettingsServi
   }
 
   private def extractBundledPlugins(gitbucketVersion: String): Unit = {
-    logger.info("Extract bundled plugins")
+    logger.info("Extract bundled plugins...")
     val cl = Thread.currentThread.getContextClassLoader
     try {
-      using(cl.getResourceAsStream("plugins/plugins.json")) { pluginsFile =>
+      using(cl.getResourceAsStream("bundle-plugins.txt")) { pluginsFile =>
         if (pluginsFile != null) {
-          val pluginsJson = IOUtils.toString(pluginsFile, "UTF-8")
+          val plugins = IOUtils.readLines(pluginsFile, "UTF-8")
+          val gitbucketVersion = GitBucketCoreModule.getVersions.asScala.last.getVersion
 
-          FileUtils.forceMkdir(PluginRepository.LocalRepositoryDir)
-          FileUtils.write(PluginRepository.LocalRepositoryIndexFile, pluginsJson, "UTF-8")
+          plugins.asScala.foreach { plugin =>
+            plugin.trim.split(":") match {
+              case Array(pluginId, pluginVersion) =>
+                val fileName = s"gitbucket-${pluginId}-plugin-gitbucket_${gitbucketVersion}-${pluginVersion}.jar"
+                val in = cl.getResourceAsStream("plugins/" + fileName)
+                if (in != null) {
+                  val file = new File(PluginHome, fileName)
+                  logger.info(s"Extract to ${file.getAbsolutePath}")
 
-          val plugins = PluginRepository.parsePluginJson(pluginsJson)
-          plugins.foreach { plugin =>
-            plugin.versions
-              .sortBy { x =>
-                Semver.valueOf(x.version)
-              }
-              .reverse
-              .zipWithIndex
-              .foreach {
-                case (version, i) =>
-                  val file = new File(PluginRepository.LocalRepositoryDir, version.file)
-                  if (!file.exists) {
-                    logger.info(s"Copy ${plugin} to ${file.getAbsolutePath}")
-                    FileUtils.forceMkdirParent(file)
-                    using(cl.getResourceAsStream("plugins/" + version.file), new FileOutputStream(file)) {
-                      case (in, out) => IOUtils.copy(in, out)
-                    }
-
-                    if (plugin.default && i == 0) {
-                      logger.info(s"Enable ${file.getName} in default")
-                      FileUtils.copyFile(file, new File(PluginHome, version.file))
-                    }
+                  FileUtils.forceMkdirParent(file)
+                  using(in, new FileOutputStream(file)) {
+                    case (in, out) => IOUtils.copy(in, out)
                   }
-              }
+                }
+              case _ => ()
+            }
           }
         }
       }

src/main/scala/gitbucket/core/servlet/PluginAssetsServlet.scala

@@ -26,7 +26,7 @@ class PluginAssetsServlet extends HttpServlet {
         try {
           val bytes = IOUtils.toByteArray(in)
           resp.setContentLength(bytes.length)
-          resp.setContentType(FileUtil.getContentType(path, bytes))
+          resp.setContentType(FileUtil.getMimeType(path, bytes))
           resp.setHeader("Cache-Control", "max-age=3600")
           resp.getOutputStream.write(bytes)
         } finally {

src/main/scala/gitbucket/core/util/Authenticator.scala

@@ -15,14 +15,10 @@ trait OneselfAuthenticator { self: ControllerBase =>
   protected def oneselfOnly[T](action: T => Any) = (form: T) => { authenticate(action(form)) }
 
   private def authenticate(action: => Any) = {
-    {
-      defining(request.paths) { paths =>
-        context.loginAccount match {
-          case Some(x) if (x.isAdmin)              => action
-          case Some(x) if (paths(0) == x.userName) => action
-          case _                                   => Unauthorized()
-        }
-      }
+    context.loginAccount match {
+      case Some(x) if (x.isAdmin)                      => action
+      case Some(x) if (request.paths(0) == x.userName) => action
+      case _                                           => Unauthorized()
     }
   }
 }
@@ -35,24 +31,22 @@ trait OwnerAuthenticator { self: ControllerBase with RepositoryService with Acco
   protected def ownerOnly[T](action: (T, RepositoryInfo) => Any) = (form: T) => { authenticate(action(form, _)) }
 
   private def authenticate(action: (RepositoryInfo) => Any) = {
-    {
-      defining(request.paths) { paths =>
-        getRepository(paths(0), paths(1)).map { repository =>
-          context.loginAccount match {
-            case Some(x) if (x.isAdmin)                      => action(repository)
-            case Some(x) if (repository.owner == x.userName) => action(repository)
-            // TODO Repository management is allowed for only group managers?
-            case Some(x) if (getGroupMembers(repository.owner).exists { m =>
-                  m.userName == x.userName && m.isManager == true
-                }) =>
-              action(repository)
-            case Some(x) if (getCollaboratorUserNames(paths(0), paths(1), Seq(Role.ADMIN)).contains(x.userName)) =>
-              action(repository)
-            case _ => Unauthorized()
-          }
-        } getOrElse NotFound()
+    val userName = params("owner")
+    val repoName = params("repository")
+    getRepository(userName, repoName).map { repository =>
+      context.loginAccount match {
+        case Some(x) if (x.isAdmin)                      => action(repository)
+        case Some(x) if (repository.owner == x.userName) => action(repository)
+        // TODO Repository management is allowed for only group managers?
+        case Some(x) if (getGroupMembers(repository.owner).exists { m =>
+              m.userName == x.userName && m.isManager == true
+            }) =>
+          action(repository)
+        case Some(x) if (getCollaboratorUserNames(userName, repoName, Seq(Role.ADMIN)).contains(x.userName)) =>
+          action(repository)
+        case _ => Unauthorized()
       }
-    }
+    } getOrElse NotFound()
   }
 }
 
@@ -64,11 +58,9 @@ trait UsersAuthenticator { self: ControllerBase =>
   protected def usersOnly[T](action: T => Any) = (form: T) => { authenticate(action(form)) }
 
   private def authenticate(action: => Any) = {
-    {
-      context.loginAccount match {
-        case Some(x) => action
-        case None    => Unauthorized()
-      }
+    context.loginAccount match {
+      case Some(x) => action
+      case None    => Unauthorized()
     }
   }
 }
@@ -81,11 +73,9 @@ trait AdminAuthenticator { self: ControllerBase =>
   protected def adminOnly[T](action: T => Any) = (form: T) => { authenticate(action(form)) }
 
   private def authenticate(action: => Any) = {
-    {
-      context.loginAccount match {
-        case Some(x) if (x.isAdmin) => action
-        case _                      => Unauthorized()
-      }
+    context.loginAccount match {
+      case Some(x) if (x.isAdmin) => action
+      case _                      => Unauthorized()
     }
   }
 }
@@ -98,17 +88,15 @@ trait ReferrerAuthenticator { self: ControllerBase with RepositoryService with A
   protected def referrersOnly[T](action: (T, RepositoryInfo) => Any) = (form: T) => { authenticate(action(form, _)) }
 
   private def authenticate(action: (RepositoryInfo) => Any) = {
-    {
-      defining(request.paths) { paths =>
-        getRepository(paths(0), paths(1)).map { repository =>
-          if (isReadable(repository.repository, context.loginAccount)) {
-            action(repository)
-          } else {
-            Unauthorized()
-          }
-        } getOrElse NotFound()
+    val userName = params("owner")
+    val repoName = params("repository")
+    getRepository(userName, repoName).map { repository =>
+      if (isReadable(repository.repository, context.loginAccount)) {
+        action(repository)
+      } else {
+        Unauthorized()
       }
-    }
+    } getOrElse NotFound()
   }
 }
 
@@ -122,20 +110,18 @@ trait ReadableUsersAuthenticator { self: ControllerBase with RepositoryService w
   }
 
   private def authenticate(action: (RepositoryInfo) => Any) = {
-    {
-      defining(request.paths) { paths =>
-        getRepository(paths(0), paths(1)).map { repository =>
-          context.loginAccount match {
-            case Some(x) if (x.isAdmin)                                                          => action(repository)
-            case Some(x) if (!repository.repository.isPrivate)                                   => action(repository)
-            case Some(x) if (paths(0) == x.userName)                                             => action(repository)
-            case Some(x) if (getGroupMembers(repository.owner).exists(_.userName == x.userName)) => action(repository)
-            case Some(x) if (getCollaboratorUserNames(paths(0), paths(1)).contains(x.userName))  => action(repository)
-            case _                                                                               => Unauthorized()
-          }
-        } getOrElse NotFound()
+    val userName = params("owner")
+    val repoName = params("repository")
+    getRepository(userName, repoName).map { repository =>
+      context.loginAccount match {
+        case Some(x) if (x.isAdmin)                                                          => action(repository)
+        case Some(x) if (!repository.repository.isPrivate)                                   => action(repository)
+        case Some(x) if (userName == x.userName)                                             => action(repository)
+        case Some(x) if (getGroupMembers(repository.owner).exists(_.userName == x.userName)) => action(repository)
+        case Some(x) if (getCollaboratorUserNames(userName, repoName).contains(x.userName))  => action(repository)
+        case _                                                                               => Unauthorized()
       }
-    }
+    } getOrElse NotFound()
   }
 }
 
@@ -149,22 +135,20 @@ trait WritableUsersAuthenticator { self: ControllerBase with RepositoryService w
   }
 
   private def authenticate(action: (RepositoryInfo) => Any) = {
-    {
-      defining(request.paths) { paths =>
-        getRepository(paths(0), paths(1)).map { repository =>
-          context.loginAccount match {
-            case Some(x) if (x.isAdmin)                                                          => action(repository)
-            case Some(x) if (paths(0) == x.userName)                                             => action(repository)
-            case Some(x) if (getGroupMembers(repository.owner).exists(_.userName == x.userName)) => action(repository)
-            case Some(x)
-                if (getCollaboratorUserNames(paths(0), paths(1), Seq(Role.ADMIN, Role.DEVELOPER))
-                  .contains(x.userName)) =>
-              action(repository)
-            case _ => Unauthorized()
-          }
-        } getOrElse NotFound()
+    val userName = params("owner")
+    val repoName = params("repository")
+    getRepository(userName, repoName).map { repository =>
+      context.loginAccount match {
+        case Some(x) if (x.isAdmin)                                                          => action(repository)
+        case Some(x) if (userName == x.userName)                                             => action(repository)
+        case Some(x) if (getGroupMembers(repository.owner).exists(_.userName == x.userName)) => action(repository)
+        case Some(x)
+            if (getCollaboratorUserNames(userName, repoName, Seq(Role.ADMIN, Role.DEVELOPER))
+              .contains(x.userName)) =>
+          action(repository)
+        case _ => Unauthorized()
       }
-    }
+    } getOrElse NotFound()
   }
 }
 
@@ -176,16 +160,12 @@ trait GroupManagerAuthenticator { self: ControllerBase with AccountService =>
   protected def managersOnly[T](action: T => Any) = (form: T) => { authenticate(action(form)) }
 
   private def authenticate(action: => Any) = {
-    {
-      defining(request.paths) { paths =>
-        context.loginAccount match {
-          case Some(x) if (getGroupMembers(paths(0)).exists { member =>
-                member.userName == x.userName && member.isManager
-              }) =>
-            action
-          case _ => Unauthorized()
-        }
-      }
+    context.loginAccount match {
+      case Some(x) if (getGroupMembers(request.paths(0)).exists { member =>
+            member.userName == x.userName && member.isManager
+          }) =>
+        action
+      case _ => Unauthorized()
     }
   }
 }

src/main/scala/gitbucket/core/util/Directory.scala

@@ -67,6 +67,12 @@ object Directory {
   def getLfsDir(owner: String, repository: String): File =
     new File(getRepositoryFilesDir(owner, repository), "lfs")
 
+  /**
+   * Directory for files which store diff fragment
+   */
+  def getDiffDir(owner: String, repository: String): File =
+    new File(getRepositoryFilesDir(owner, repository), "diff")
+
   /**
    * Directory for uploaded files by the specified user.
    */

src/main/scala/gitbucket/core/util/EditorConfigUtil.scala

@@ -0,0 +1,146 @@
+package gitbucket.core.util
+
+import java.io.{IOException, InputStreamReader, Reader}
+import java.nio.charset.StandardCharsets
+
+import org.ec4j.core.Resource.Resources.StringRandomReader
+import org.ec4j.core.model.PropertyType.{EndOfLineValue, IndentStyleValue}
+import org.ec4j.core.model.{Ec4jPath, PropertyType, Version}
+import org.ec4j.core.parser.ParseException
+import org.ec4j.core._
+import org.eclipse.jgit.api.Git
+import org.eclipse.jgit.lib.{ObjectReader, Repository}
+import org.eclipse.jgit.revwalk.{RevTree, RevWalk}
+import org.eclipse.jgit.treewalk.TreeWalk
+import gitbucket.core.util.SyntaxSugars._
+
+object EditorConfigUtil {
+  private class JGitResource(repo: Repository, revStr: String, path: Ec4jPath) extends Resource {
+    private def removeInitialSlash(path: Ec4jPath) = Ec4jPath.Ec4jPaths.root.relativize(path).toString
+
+    def this(git: Git, revStr: String, path: String) = {
+      this(git.getRepository, revStr, Ec4jPath.Ec4jPaths.of(if (path.startsWith("/")) path else "/" + path))
+    }
+
+    def this(repo: Repository, revStr: String, path: String) = {
+      this(repo, revStr, Ec4jPath.Ec4jPaths.of(if (path.startsWith("/")) path else "/" + path))
+    }
+
+    private def getRevTree: RevTree = {
+      using(repo.newObjectReader()) { reader: ObjectReader =>
+        val revWalk = new RevWalk(reader)
+        val id = repo.resolve(revStr)
+        val commit = revWalk.parseCommit(id)
+        commit.getTree
+      }
+    }
+
+    override def exists(): Boolean = {
+      using(repo.newObjectReader()) { reader: ObjectReader =>
+        try {
+          val treeWalk = Option(TreeWalk.forPath(reader, removeInitialSlash(path), getRevTree))
+          treeWalk.isDefined
+        } catch {
+          case e: IOException => false
+        }
+      }
+    }
+
+    override def getPath: Ec4jPath = {
+      path
+    }
+
+    override def getParent: ResourcePath = {
+      Option(path.getParentPath).map { new JGitResourcePath(repo, revStr, _) }.getOrElse(null)
+    }
+
+    override def openRandomReader(): Resource.RandomReader = {
+      StringRandomReader.ofReader(openReader())
+    }
+
+    override def openReader(): Reader = {
+      using(repo.newObjectReader) { reader: ObjectReader =>
+        val treeWalk = TreeWalk.forPath(reader, removeInitialSlash(path), getRevTree)
+        new InputStreamReader(reader.open(treeWalk.getObjectId(0)).openStream, StandardCharsets.UTF_8)
+      }
+    }
+  }
+
+  private class JGitResourcePath(repo: Repository, revStr: String, path: Ec4jPath) extends ResourcePath {
+
+    override def getParent: ResourcePath = {
+      Option(path.getParentPath).map { new JGitResourcePath(repo, revStr, _) }.getOrElse(null)
+    }
+
+    override def getPath: Ec4jPath = {
+      path
+    }
+
+    override def hasParent: Boolean = {
+      Option(path.getParentPath).isDefined
+    }
+
+    override def relativize(resource: Resource): Resource = {
+      resource match {
+        case r: JGitResource =>
+          new JGitResource(repo, revStr, path.relativize(r.getPath).toString)
+      }
+    }
+
+    override def resolve(name: String): Resource = {
+      Option(path)
+        .map { p =>
+          new JGitResource(repo, revStr, p.resolve(name))
+        }
+        .getOrElse {
+          new JGitResource(repo, revStr, name)
+        }
+    }
+  }
+
+  private object JGitResourcePath {
+    def RootDirectory(git: Git, revStr: String) =
+      new JGitResourcePath(git.getRepository, revStr, Ec4jPath.Ec4jPaths.of("/"))
+  }
+
+  private val TabSizeDefault: Int = 8
+  private val NewLineModeDefault: String = "auto"
+  private val UseSoftTabsDefault = false
+
+  case class EditorConfigInfo(
+    tabSize: Int,
+    newLineMode: String,
+    useSoftTabs: Boolean
+  )
+
+  def getEditorConfigInfo(git: Git, rev: String, path: String): EditorConfigInfo = {
+    try {
+      val resourcePropertiesService = ResourcePropertiesService
+        .builder()
+        .configFileName(EditorConfigConstants.EDITORCONFIG)
+        .rootDirectory(JGitResourcePath.RootDirectory(git, rev))
+        .loader(EditorConfigLoader.of(Version.CURRENT))
+        .keepUnset(true)
+        .build()
+
+      val props = resourcePropertiesService.queryProperties(new JGitResource(git, rev, path))
+      EditorConfigInfo(
+        tabSize = props.getValue[Integer](PropertyType.tab_width, TabSizeDefault, false),
+        newLineMode = props.getValue[EndOfLineValue](PropertyType.end_of_line, null, false) match {
+          case EndOfLineValue.cr   => "cr"
+          case EndOfLineValue.lf   => "lf"
+          case EndOfLineValue.crlf => "crlf"
+          case _                   => "auto"
+        },
+        props.getValue[IndentStyleValue](PropertyType.indent_style, null, false) match {
+          case IndentStyleValue.space => true
+          case IndentStyleValue.tab   => false
+          case _                      => false
+        }
+      )
+    } catch {
+      case e: ParseException => EditorConfigInfo(TabSizeDefault, NewLineModeDefault, UseSoftTabsDefault)
+      case e: IOException    => EditorConfigInfo(TabSizeDefault, NewLineModeDefault, UseSoftTabsDefault)
+    }
+  }
+}

src/main/scala/gitbucket/core/util/FileUtil.scala

@@ -16,7 +16,7 @@ object FileUtil {
       }
     }
 
-  def getContentType(name: String, bytes: Array[Byte]): String = {
+  def getMimeType(name: String, bytes: Array[Byte]): String = {
     defining(getMimeType(name)) { mimeType =>
       if (mimeType == "application/octet-stream" && isText(bytes)) {
         "text/plain"
@@ -26,6 +26,10 @@ object FileUtil {
     }
   }
 
+  def getSafeMimeType(name: String): String = {
+    getMimeType(name).replace("text/html", "text/plain")
+  }
+
   def isImage(name: String): Boolean = getMimeType(name).startsWith("image/")
 
   def isLarge(size: Long): Boolean = (size > 1024 * 1000)
@@ -52,7 +56,7 @@ object FileUtil {
   }
 
   def getLfsFilePath(owner: String, repository: String, oid: String): String =
-    Directory.getLfsDir(owner, repository) + "/" + oid
+    Directory.getLfsDir(owner, repository) + "/" + checkFilename(oid)
 
   def readableSize(size: Long): String = FileUtils.byteCountToDisplaySize(size)
 
@@ -76,6 +80,16 @@ object FileUtil {
     file
   }
 
+  /**
+   * Create an instance of java.io.File safely.
+   */
+  def checkFilename(name: String): String = {
+    if (name.contains("..")) {
+      throw new IllegalArgumentException(s"Invalid file name: ${name}")
+    }
+    name
+  }
+
   lazy val MaxFileSize =
     if (System.getProperty("gitbucket.maxFileSize") != null)
       System.getProperty("gitbucket.maxFileSize").toLong

src/main/scala/gitbucket/core/util/HttpClientUtil.scala

@@ -0,0 +1,35 @@
+package gitbucket.core.util
+
+import gitbucket.core.service.SystemSettingsService
+import org.apache.http.HttpHost
+import org.apache.http.auth.{AuthScope, UsernamePasswordCredentials}
+import org.apache.http.impl.client.{BasicCredentialsProvider, CloseableHttpClient, HttpClientBuilder}
+
+object HttpClientUtil {
+
+  def withHttpClient[T](proxy: Option[SystemSettingsService.Proxy])(f: CloseableHttpClient => T): T = {
+    val builder = HttpClientBuilder.create.useSystemProperties
+
+    proxy.foreach { proxy =>
+      builder.setProxy(new HttpHost(proxy.host, proxy.port))
+
+      for (user <- proxy.user; password <- proxy.password) {
+        val credential = new BasicCredentialsProvider()
+        credential.setCredentials(
+          new AuthScope(proxy.host, proxy.port),
+          new UsernamePasswordCredentials(user, password)
+        )
+        builder.setDefaultCredentialsProvider(credential)
+      }
+    }
+
+    val httpClient = builder.build()
+
+    try {
+      f(httpClient)
+    } finally {
+      httpClient.close()
+    }
+  }
+
+}

src/main/scala/gitbucket/core/util/JDBCUtil.scala

@@ -143,6 +143,7 @@ object JDBCUtil {
                       case Types.BOOLEAN | Types.BIT                                   => rs.getBoolean(columnName)
                       case Types.VARCHAR | Types.CLOB | Types.CHAR | Types.LONGVARCHAR => rs.getString(columnName)
                       case Types.INTEGER                                               => rs.getInt(columnName)
+                      case Types.BIGINT                                                => rs.getLong(columnName)
                       case Types.TIMESTAMP                                             => rs.getTimestamp(columnName)
                     }
                   }
@@ -202,8 +203,7 @@ object JDBCUtil {
 
     private def allTablesOrderByDependencies(meta: DatabaseMetaData): Seq[String] = {
       val tables = allTableNames.map { tableName =>
-        val result = TableDependency(tableName, childTables(meta, tableName))
-        result
+        TableDependency(tableName, childTables(meta, tableName))
       }
 
       val edges = tables.flatMap { table =>
@@ -212,7 +212,10 @@ object JDBCUtil {
         }
       }
 
-      tsort(edges).toSeq
+      val ordered = tsort(edges).toSeq
+      val orphans = tables.collect { case x if !ordered.contains(x.tableName) => x.tableName }
+
+      ordered ++ orphans
     }
 
     def tsort[A](edges: Traversable[(A, A)]): Iterable[A] = {

src/main/scala/gitbucket/core/util/JGitUtil.scala

@@ -1,6 +1,6 @@
 package gitbucket.core.util
 
-import java.io.ByteArrayOutputStream
+import java.io.{ByteArrayOutputStream, File, FileInputStream, InputStream}
 
 import gitbucket.core.service.RepositoryService
 import org.eclipse.jgit.api.Git
@@ -23,12 +23,7 @@ import java.util.concurrent.TimeUnit
 import java.util.function.Consumer
 
 import org.cache2k.Cache2kBuilder
-import org.eclipse.jgit.api.errors.{
-  InvalidRefNameException,
-  JGitInternalException,
-  NoHeadException,
-  RefAlreadyExistsException
-}
+import org.eclipse.jgit.api.errors._
 import org.eclipse.jgit.diff.{DiffEntry, DiffFormatter, RawTextComparator}
 import org.eclipse.jgit.dircache.DirCacheEntry
 import org.eclipse.jgit.util.io.DisabledOutputStream
@@ -390,7 +385,7 @@ object JGitUtil {
             lazy val newParentsMap = newCommit.getParents.map(_ -> newCommit).toMap
             useTreeWalk(newCommit) { walk =>
               while (walk.next) {
-                rest.remove(walk.getNameString -> walk.getObjectId(0)).map {
+                rest.remove(walk.getNameString -> walk.getObjectId(0)).foreach {
                   case (tuple, _) =>
                     if (newParentsMap.isEmpty) {
                       nextResult +:= tupleAdd(tuple, newCommit)
@@ -400,7 +395,7 @@ object JGitUtil {
                 }
               }
             }
-            rest.values.map {
+            rest.values.foreach {
               case (tuple, parentsMap) =>
                 val restParentsMap = parentsMap - newCommit
                 if (restParentsMap.isEmpty) {
@@ -761,7 +756,27 @@ object JGitUtil {
     }
 
   /**
-   * Returns the list of tags of the specified commit.
+   * Returns the list of tags which pointed on the specified commit.
+   */
+  def getTagsOnCommit(git: Git, commitId: String): List[String] = {
+    git.getRepository.getAllRefsByPeeledObjectId.asScala
+      .get(git.getRepository.resolve(commitId + "^0"))
+      .map {
+        _.asScala
+          .collect {
+            case x if x.getName.startsWith(Constants.R_TAGS) =>
+              x.getName.substring(Constants.R_TAGS.length)
+          }
+          .toList
+          .sorted
+      }
+      .getOrElse {
+        List.empty
+      }
+  }
+
+  /**
+   * Returns the list of tags which contains the specified commit.
    */
   def getTagsOfCommit(git: Git, commitId: String): List[String] =
     using(new RevWalk(git.getRepository)) { revWalk =>
@@ -816,6 +831,25 @@ object JGitUtil {
       .find(_._1 != null)
   }
 
+  def createTag(git: Git, name: String, message: Option[String], commitId: String) = {
+    try {
+      val objectId: ObjectId = git.getRepository.resolve(commitId)
+      using(new RevWalk(git.getRepository)) { walk =>
+        val tagCommand = git.tag().setName(name).setObjectId(walk.parseCommit(objectId))
+        message.foreach { message =>
+          tagCommand.setMessage(message)
+        }
+        tagCommand.call()
+      }
+      Right("Tag added.")
+    } catch {
+      case e: GitAPIException              => Left("Sorry, some Git operation error occurs.")
+      case e: ConcurrentRefUpdateException => Left("Sorry some error occurs.")
+      case e: InvalidTagNameException      => Left("Sorry, that name is invalid.")
+      case e: NoHeadException              => Left("Sorry, this repo doesn't have HEAD reference")
+    }
+  }
+
   def createBranch(git: Git, fromBranch: String, newBranch: String) = {
     try {
       git.branchCreate().setStartPoint(fromBranch).setName(newBranch).call()
@@ -1200,4 +1234,61 @@ object JGitUtil {
       Option(git.getRepository.resolve(revstr)).map(ObjectId.toString(_))
     }
   }
+
+  def getFileSize(git: Git, repository: RepositoryService.RepositoryInfo, treeWalk: TreeWalk): Long = {
+    val attrs = treeWalk.getAttributes
+    val loader = git.getRepository.open(treeWalk.getObjectId(0))
+    if (attrs.containsKey("filter") && attrs.get("filter").getValue == "lfs") {
+      val lfsAttrs = getLfsAttributes(loader)
+      lfsAttrs.get("size").map(_.toLong).get
+    } else {
+      loader.getSize
+    }
+  }
+
+  def getFileSize(git: Git, repository: RepositoryService.RepositoryInfo, tree: RevTree, path: String): Long = {
+    using(TreeWalk.forPath(git.getRepository, path, tree)) { treeWalk =>
+      getFileSize(git, repository, treeWalk)
+    }
+  }
+
+  def openFile[T](git: Git, repository: RepositoryService.RepositoryInfo, treeWalk: TreeWalk)(
+    f: InputStream => T
+  ): T = {
+    val attrs = treeWalk.getAttributes
+    val loader = git.getRepository.open(treeWalk.getObjectId(0))
+    if (attrs.containsKey("filter") && attrs.get("filter").getValue == "lfs") {
+      val lfsAttrs = getLfsAttributes(loader)
+      if (lfsAttrs.nonEmpty) {
+        val oid = lfsAttrs("oid").split(":")(1)
+
+        val file = new File(FileUtil.getLfsFilePath(repository.owner, repository.name, oid))
+        using(new FileInputStream(FileUtil.getLfsFilePath(repository.owner, repository.name, oid))) { in =>
+          f(in)
+        }
+      } else {
+        throw new NoSuchElementException("LFS attribute is empty.")
+      }
+    } else {
+      using(loader.openStream()) { in =>
+        f(in)
+      }
+    }
+  }
+
+  def openFile[T](git: Git, repository: RepositoryService.RepositoryInfo, tree: RevTree, path: String)(
+    f: InputStream => T
+  ): T = {
+    using(TreeWalk.forPath(git.getRepository, path, tree)) { treeWalk =>
+      openFile(git, repository, treeWalk)(f)
+    }
+  }
+
+  private def getLfsAttributes(loader: ObjectLoader): Map[String, String] = {
+    val bytes = loader.getCachedBytes
+    val text = new String(bytes, "UTF-8")
+
+    JGitUtil.getLfsObjects(text)
+  }
+
 }

src/main/scala/gitbucket/core/util/LDAPUtil.scala

@@ -5,8 +5,11 @@ import SyntaxSugars._
 import gitbucket.core.service.SystemSettingsService
 import gitbucket.core.service.SystemSettingsService.Ldap
 import com.novell.ldap._
-import java.security.Security
+import java.security.{Provider, Security}
+import java.util.concurrent.atomic.AtomicReference
+
 import org.slf4j.LoggerFactory
+
 import scala.annotation.tailrec
 
 /**
@@ -15,10 +18,11 @@ import scala.annotation.tailrec
 object LDAPUtil {
 
   private val LDAP_VERSION: Int = LDAPConnection.LDAP_V3
-  private val logger = LoggerFactory.getLogger(getClass().getName())
-
   private val LDAP_DUMMY_MAL = "@ldap-devnull"
 
+  private val logger = LoggerFactory.getLogger(getClass().getName())
+  private val provider = new AtomicReference[Provider](null)
+
   /**
    * Returns true if mail address ends with "@ldap-devnull"
    */
@@ -120,6 +124,17 @@ object LDAPUtil {
     }).replaceAll("[^a-zA-Z0-9\\-_.]", "").replaceAll("^[_\\-]", "")
   }
 
+  private def getSslProvider(): Provider = {
+    val cachedInstance = provider.get()
+    if (cachedInstance == null) {
+      val newInstance = Class.forName("com.sun.net.ssl.internal.ssl.Provider").newInstance().asInstanceOf[Provider]
+      provider.compareAndSet(null, newInstance)
+      newInstance
+    } else {
+      cachedInstance
+    }
+  }
+
   private def bind[A](
     host: String,
     port: Int,
@@ -132,7 +147,7 @@ object LDAPUtil {
   )(f: LDAPConnection => Either[String, A]): Either[String, A] = {
     if (tls) {
       // Dynamically set Sun as the security provider
-      Security.addProvider(new com.sun.net.ssl.internal.ssl.Provider())
+      Security.addProvider(getSslProvider())
 
       if (keystore.compareTo("") != 0) {
         // Dynamically set the property that JSSE uses to identify

src/main/scala/gitbucket/core/util/StringUtil.scala

@@ -1,10 +1,13 @@
 package gitbucket.core.util
 
 import java.net.{URLDecoder, URLEncoder}
-import java.util.Base64
+import java.security.SecureRandom
+import java.util.{Base64, UUID}
 
 import org.mozilla.universalchardet.UniversalDetector
 import SyntaxSugars._
+import javax.crypto.SecretKeyFactory
+import javax.crypto.spec.PBEKeySpec
 import org.apache.commons.io.input.BOMInputStream
 import org.apache.commons.io.IOUtils
 
@@ -13,9 +16,33 @@ import scala.util.control.Exception._
 object StringUtil {
 
   private lazy val BlowfishKey = {
-    // last 4 numbers in current timestamp
-    val time = System.currentTimeMillis.toString
-    time.substring(time.length - 4)
+    UUID.randomUUID().toString.substring(0, 16)
+  }
+
+  def base64Encode(value: Array[Byte]): String = {
+    Base64.getEncoder.encodeToString(value)
+  }
+
+  def base64Decode(value: String): Array[Byte] = {
+    Base64.getDecoder.decode(value)
+  }
+
+  def pbkdf2_sha256(iter: Int, salt: String, value: String): String = {
+    val keyFactory = SecretKeyFactory.getInstance("PBKDF2WithHmacSHA256")
+    val ks = new PBEKeySpec(value.toCharArray, base64Decode(salt), iter, 256)
+    val s = keyFactory.generateSecret(ks)
+    base64Encode(s.getEncoded)
+  }
+
+  def pbkdf2_sha256(value: String) = {
+    val keyFactory = SecretKeyFactory.getInstance("PBKDF2WithHmacSHA256")
+    val secureRandom = new SecureRandom
+    val salt: Array[Byte] = new Array(32)
+    secureRandom.nextBytes(salt)
+    val iter = 100000
+    val ks = new PBEKeySpec(value.toCharArray, salt, iter, 256)
+    val s = keyFactory.generateSecret(ks)
+    s"""$$pbkdf2-sha256$$${iter}$$${base64Encode(salt)}$$${base64Encode(s.getEncoded)}"""
   }
 
   def sha1(value: String): String =

src/main/scala/gitbucket/core/view/helpers.scala

@@ -3,6 +3,7 @@ package gitbucket.core.view
 import java.text.SimpleDateFormat
 import java.util.{Date, Locale, TimeZone}
 
+import com.nimbusds.jose.util.JSONObjectUtils
 import gitbucket.core.controller.Context
 import gitbucket.core.model.CommitState
 import gitbucket.core.plugin.{PluginRegistry, RenderRequest}
@@ -249,12 +250,12 @@ object helpers extends AvatarImageProvider with LinkConverter with RequestCache
    * Generates the url to the repository.
    */
   def url(repository: RepositoryService.RepositoryInfo)(implicit context: Context): String =
-    s"${context.path}/${repository.owner}/${repository.name}"
+    s"${context.path}/${encodeRefName(repository.owner)}/${encodeRefName(repository.name)}"
 
   /**
    * Generates the url to the account page.
    */
-  def url(userName: String)(implicit context: Context): String = s"${context.path}/${userName}"
+  def url(userName: String)(implicit context: Context): String = s"${context.path}/${encodeRefName(userName)}"
 
   /**
    * Returns the url to the root of assets.
@@ -272,7 +273,7 @@ object helpers extends AvatarImageProvider with LinkConverter with RequestCache
    * If user does not exist or disabled, this method returns user name as text without link.
    */
   def user(userName: String, mailAddress: String = "", styleClass: String = "")(implicit context: Context): Html =
-    userWithContent(userName, mailAddress, styleClass)(Html(userName))
+    userWithContent(userName, mailAddress, styleClass)(Html(StringUtil.escapeHtml(userName)))
 
   /**
    * Generates the avatar link to the account page.
@@ -315,44 +316,6 @@ object helpers extends AvatarImageProvider with LinkConverter with RequestCache
    */
   def isPast(date: Date): Boolean = System.currentTimeMillis > date.getTime
 
-  /**
-   * Returns file type for AceEditor.
-   */
-  def editorType(fileName: String): String = {
-    fileName.toLowerCase match {
-      case x if (x.endsWith(".bat"))     => "batchfile"
-      case x if (x.endsWith(".java"))    => "java"
-      case x if (x.endsWith(".scala"))   => "scala"
-      case x if (x.endsWith(".js"))      => "javascript"
-      case x if (x.endsWith(".css"))     => "css"
-      case x if (x.endsWith(".md"))      => "markdown"
-      case x if (x.endsWith(".html"))    => "html"
-      case x if (x.endsWith(".xml"))     => "xml"
-      case x if (x.endsWith(".c"))       => "c_cpp"
-      case x if (x.endsWith(".cpp"))     => "c_cpp"
-      case x if (x.endsWith(".coffee"))  => "coffee"
-      case x if (x.endsWith(".ejs"))     => "ejs"
-      case x if (x.endsWith(".hs"))      => "haskell"
-      case x if (x.endsWith(".json"))    => "json"
-      case x if (x.endsWith(".jsp"))     => "jsp"
-      case x if (x.endsWith(".jsx"))     => "jsx"
-      case x if (x.endsWith(".cl"))      => "lisp"
-      case x if (x.endsWith(".clojure")) => "lisp"
-      case x if (x.endsWith(".lua"))     => "lua"
-      case x if (x.endsWith(".php"))     => "php"
-      case x if (x.endsWith(".py"))      => "python"
-      case x if (x.endsWith(".rdoc"))    => "rdoc"
-      case x if (x.endsWith(".rhtml"))   => "rhtml"
-      case x if (x.endsWith(".ruby"))    => "ruby"
-      case x if (x.endsWith(".sh"))      => "sh"
-      case x if (x.endsWith(".sql"))     => "sql"
-      case x if (x.endsWith(".tcl"))     => "tcl"
-      case x if (x.endsWith(".vbs"))     => "vbscript"
-      case x if (x.endsWith(".yml"))     => "yaml"
-      case _                             => "plain_text"
-    }
-  }
-
   def pre(value: Html): Html = Html(s"<pre>${value.body.trim.split("\n").map(_.trim).mkString("\n")}</pre>")
 
   /**
@@ -462,4 +425,44 @@ object helpers extends AvatarImageProvider with LinkConverter with RequestCache
    */
   def readableSize(size: Option[Long]): String = FileUtil.readableSize(size.getOrElse(0))
 
+  /**
+   * Make HTML fragment of the partial diff for a comment on a line of diff.
+   *
+   * @param jsonString JSON string which is stored in COMMIT_COMMENT table.
+   * @return HTML fragment of diff
+   */
+  def diff(jsonString: String): Html = {
+    import org.json4s._
+    import org.json4s.jackson.JsonMethods._
+    implicit val formats = DefaultFormats
+
+    val diff = parse(jsonString).extract[Seq[CommentDiffLine]]
+
+    val sb = new StringBuilder()
+    sb.append("<table class=\"diff inlinediff\">")
+    diff.foreach { line =>
+      sb.append("<tr>")
+      sb.append(s"""<th class="line-num oldline ${line.`type`}">""")
+      line.oldLine.foreach { oldLine =>
+        sb.append(oldLine)
+      }
+      sb.append("</th>")
+      sb.append(s"""<th class="line-num newline ${line.`type`}">""")
+      line.newLine.foreach { newLine =>
+        sb.append(newLine)
+      }
+      sb.append("</th>")
+
+      sb.append(s"""<td class="body ${line.`type`}">""")
+      sb.append(StringUtil.escapeHtml(line.text))
+      sb.append("</td>")
+      sb.append("</tr>")
+    }
+    sb.append("</table>")
+
+    Html(sb.toString())
+  }
+
+  case class CommentDiffLine(newLine: Option[String], oldLine: Option[String], `type`: String, text: String)
+
 }

src/main/twirl/gitbucket/core/account/activity.scala.html

@@ -1,8 +1,9 @@
 @(account: gitbucket.core.model.Account,
   groupNames: List[String],
-  activities: List[gitbucket.core.model.Activity])(implicit context: gitbucket.core.controller.Context)
+  activities: List[gitbucket.core.model.Activity],
+  extraMailAddresses: List[String])(implicit context: gitbucket.core.controller.Context)
 @import gitbucket.core.view.helpers
-@gitbucket.core.account.html.main(account, groupNames, "activity"){
+@gitbucket.core.account.html.main(account, groupNames, "activity", extraMailAddresses){
   <div class="pull-right">
     <a href="@context.path/@{account.userName}.atom"><img src="@helpers.assets("/common/images/feed.png")" alt="activities"></a>
   </div>

src/main/twirl/gitbucket/core/account/edit.scala.html

@@ -1,4 +1,4 @@
-@(account: gitbucket.core.model.Account, info: Option[Any], error: Option[Any])(implicit context: gitbucket.core.controller.Context)
+@(account: gitbucket.core.model.Account, extraMailAddresses: List[String], info: Option[Any], error: Option[Any])(implicit context: gitbucket.core.controller.Context)
 @import gitbucket.core.util.LDAPUtil
 @import gitbucket.core.view.helpers
 @gitbucket.core.html.main("Edit your profile"){
@@ -31,6 +31,13 @@
                 <input type="text" name="mailAddress" id="mailAddress" class="form-control" value="@if(!LDAPUtil.isDummyMailAddress(account)){@account.mailAddress}"/>
                 <span id="error-mailAddress" class="error"></span>
               </fieldset>
+              <fieldset class="form-group" id="extraMailAddresses">
+                <span class="strong">Additional Mail Address:</span>
+                @extraMailAddresses.zipWithIndex.map { case (mail, idx) =>
+                  <input type="text" name="extraMailAddresses[@idx]" id="extraMailAddresses[@idx]" class="form-control extraMailAddress" value="@mail"/>
+                  <span id="error-extraMailAddresses_@idx" class="error"></span>
+                }
+              </fieldset>
               <fieldset class="form-group">
                 <label for="url" class="strong">URL (optional):</label>
                 <input type="text" name="url" id="url" class="form-control" value="@account.url"/>
@@ -62,6 +69,8 @@
 }
 <script>
 $(function(){
+  addExtraMailAddress();
+  $('#extraMailAddresses').on('change', '.extraMailAddress', checkExtraMailAddress);
   $('#save').click(function(){
     if($('#password').val() != ''){
       return confirm('Are you sure you want to change password?');

src/main/twirl/gitbucket/core/account/groupform.scala.html

@@ -77,6 +77,7 @@ $(function(){
       function(data, status){
         if(data == 'user'){
           addMemberHTML(userName, false);
+          $('#memberName').val('');
         } else {
           $('#error-members').text('User does not exist.');
         }
@@ -118,7 +119,7 @@ $(function(){
       .append(' ')
       .append($('<a>').attr('href', '@context.path/' + userName).text(userName))
       .append(' ')
-      .append($('<a href="#" class="remove pull-right">(remove)</a>')));
+      .append($('<a href="#" class="remove pull-right"><span class="octicon octicon-x"></span></a>')));
   }
 
   function updateMembers(){

src/main/twirl/gitbucket/core/account/main.scala.html

@@ -1,4 +1,4 @@
-@(account: gitbucket.core.model.Account, groupNames: List[String], active: String,
+@(account: gitbucket.core.model.Account, groupNames: List[String], active: String, extraMailAddresses: List[String],
   isGroupManager: Boolean = false)(body: Html)(implicit context: gitbucket.core.controller.Context)
 @import gitbucket.core.view.helpers
 @gitbucket.core.html.main(account.userName){
@@ -20,6 +20,16 @@
             <i class="octicon octicon-home"></i> <a href="@account.url">@account.url</a>
           </p>
         }
+        @if(context.settings.showMailAddress){
+          <p style="white-space: nowrap; overflow: hidden; text-overflow: ellipsis;">
+            <i class="octicon octicon-mail"></i> <a href="mailto: @account.mailAddress">@account.mailAddress</a>
+          </p>
+          @extraMailAddresses.map{ mail =>
+            <p style="white-space: nowrap; overflow: hidden; text-overflow: ellipsis;">
+              <i class="octicon octicon-mail"></i> <a href="mailto: @mail">@mail</a>
+            </p>
+          }
+        }
         <p style="color: #999">
           <i class="octicon octicon-clock"></i> Joined on @helpers.date(account.registeredDate)
         </p>

src/main/twirl/gitbucket/core/account/members.scala.html

@@ -1,16 +1,16 @@
-@(account: gitbucket.core.model.Account, members: List[gitbucket.core.model.GroupMember], isGroupManager: Boolean)(implicit context: gitbucket.core.controller.Context)
+@(account: gitbucket.core.model.Account, members: List[gitbucket.core.model.GroupMember], extraMailAddresses: List[String], isGroupManager: Boolean)(implicit context: gitbucket.core.controller.Context)
 @import gitbucket.core.view.helpers
-@gitbucket.core.account.html.main(account, Nil, "members", isGroupManager){
+@gitbucket.core.account.html.main(account, Nil, "members", extraMailAddresses, isGroupManager){
   @if(members.isEmpty){
     No members
   } else {
     @members.map { member =>
       <div class="block">
         <div class="block-header">
-          @helpers.avatar(member.userName, 20) <a href="@helpers.url(member.userName)">@member.userName</a>
+          @helpers.avatarLink(member.userName, 20) <a href="@helpers.url(member.userName)">@member.userName</a>
           @if(member.isManager){ (Manager) }
         </div>
       </div>
     }
   }
-}
+}

src/main/twirl/gitbucket/core/account/menu.scala.html

@@ -19,7 +19,7 @@
             <i class="menu-icon octicon octicon-person"></i> <span>Profile</span>
           </a>
         </li>
-        @if(context.settings.ssh){
+        @if(context.settings.ssh.enabled){
           <li class="menu-item-hover @if(active=="ssh"){active}">
             <a href="@context.path/@userName/_ssh">
               <i class="menu-icon octicon octicon-key"></i> <span>SSH Keys</span>

src/main/twirl/gitbucket/core/account/newrepo.scala.html

@@ -32,7 +32,7 @@ isCreateRepoOptionPublic: Boolean)(implicit context: gitbucket.core.controller.C
         <dl>
           <dt>Repository name</dt>
           <dd style="margin-left: 0px;">
-            <input type="text" name="name" id="name" class="form-control" style="width: 200px;" autofocus />
+            <input type="text" name="name" id="name" class="form-control" style="width: 300px; display: inline;" autofocus/>
             <span id="error-name" class="error"></span>
           </dd>
         </dl>

src/main/twirl/gitbucket/core/account/register.scala.html

@@ -28,6 +28,9 @@
             <input type="text" name="mailAddress" id="mailAddress" class="form-control" value=""/>
             <span id="error-mailAddress" class="error"></span>
           </fieldset>
+          <div id="extraMailAddresses">
+            <span class="strong">Additional Mail Address:</span>
+          </div>
           <fieldset>
             <label for="url" class="strong">URL (optional):</label>
             <input type="text" name="url" id="url" class="form-control" value=""/>
@@ -52,4 +55,10 @@
     </form>
   </div>
 </div>
+<script>
+  $(function() {
+    addExtraMailAddress();
+    $('#extraMailAddresses').on('change', '.extraMailAddress', checkExtraMailAddress);
+  });
+</script>
 }

src/main/twirl/gitbucket/core/account/repositories.scala.html

@@ -1,8 +1,9 @@
 @(account: gitbucket.core.model.Account, groupNames: List[String],
   repositories: List[gitbucket.core.service.RepositoryService.RepositoryInfo],
+  extraMailAddresses: List[String],
   isGroupManager: Boolean)(implicit context: gitbucket.core.controller.Context)
 @import gitbucket.core.view.helpers
-@gitbucket.core.account.html.main(account, groupNames, "repositories", isGroupManager){
+@gitbucket.core.account.html.main(account, groupNames, "repositories", extraMailAddresses, isGroupManager){
   @if(repositories.isEmpty){
     No repositories
   } else {

src/main/twirl/gitbucket/core/admin/plugins.scala.html

@@ -1,4 +1,4 @@
-@(plugins: List[(gitbucket.core.plugin.PluginInfoBase, Boolean)], info: Option[Any])(implicit context: gitbucket.core.controller.Context)
+@(plugins: List[(gitbucket.core.plugin.PluginInfoBase, Boolean, String)], info: Option[Any])(implicit context: gitbucket.core.controller.Context)
 @gitbucket.core.html.main("Plugins"){
   @gitbucket.core.admin.html.menu("plugins") {
     @gitbucket.core.helper.html.information(info)
@@ -8,23 +8,27 @@
     <h1 class="system-settings-title">Plugins</h1>
     @if(plugins.size > 0) {
       <ul>
-      @plugins.map { case (plugin, enabled) =>
-        <li><a href="#@plugin.pluginId">@plugin.pluginId:@plugin.pluginVersion</a></li>
-      }
+        @plugins.map { case (plugin, enabled, updatableVersion) =>
+          <li><a href="#@plugin.pluginId">@plugin.pluginId:@plugin.pluginVersion</a></li>
+        }
       </ul>
 
-      @plugins.map { case (plugin, enabled) =>
+      @plugins.map { case (plugin, enabled, updatableVersion) =>
         <div class="panel panel-default">
           <div class="panel-heading strong" id="@plugin.pluginId">
-            @if(enabled){
-              <form action="@{context.path}/admin/plugins/@{plugin.pluginId}/@{plugin.pluginVersion}/_uninstall" method="POST" class="pull-right uninstall-form">
-                <input type="submit" value="Uninstall" class="btn btn-danger btn-sm" style="position: relative; top: -5px; left: 10px;" data-name="@plugin.pluginName">
-              </form>
-            } else {
-              <form action="@{context.path}/admin/plugins/@{plugin.pluginId}/@{plugin.pluginVersion}/_install" method="POST" class="pull-right install-form">
-                <input type="submit" value="Install" class="btn btn-success btn-sm" style="position: relative; top: -5px; left: 10px;" data-name="@plugin.pluginName">
-              </form>
-            }
+            <form method="POST" class="pull-right">
+              @if(enabled){
+                @if(updatableVersion.nonEmpty){
+                  <input type="submit" value="Update" class="btn btn-success btn-sm update-plugin" style="position: relative; top: -5px; left: 10px;"
+                         data-name="@plugin.pluginName" formaction="@{context.path}/admin/plugins/@{plugin.pluginId}/@{updatableVersion}/_install">
+                }
+                <input type="submit" value="Uninstall" class="btn btn-danger btn-sm uninstall-plugin" style="position: relative; top: -5px; left: 10px;"
+                       data-name="@plugin.pluginName" formaction="@{context.path}/admin/plugins/@{plugin.pluginId}/_uninstall">
+              } else {
+                <input type="submit" value="Install" class="btn btn-success btn-sm install-plugin" style="position: relative; top: -5px; left: 10px;"
+                       data-name="@plugin.pluginName" formaction="@{context.path}/admin/plugins/@{plugin.pluginId}/@{plugin.pluginVersion}/_install">
+              }
+            </form>
             @plugin.pluginName
           </div>
           <div class="panel-body">
@@ -54,14 +58,19 @@
 }
 <script>
   $(function(){
-    $('.uninstall-form').click(function(e){
+    $('.uninstall-plugin').click(function(e){
       var name = $(e.target).data('name');
       return confirm('Uninstall ' + name + '. Are you sure?');
     });
 
-    $('.install-form').click(function(e){
+    $('.install-plugin').click(function(e){
       var name = $(e.target).data('name');
       return confirm('Install ' + name + '. Are you sure?');
     });
+
+    $('.update-plugin').click(function(e){
+      var name = $(e.target).data('name');
+      return confirm('Update ' + name + '. Are you sure?');
+    });
   });
 </script>

src/main/twirl/gitbucket/core/admin/settings.scala.html

@@ -8,6 +8,7 @@
       <ul class="nav nav-tabs fill-width" id="pullreq-tab">
         <li><a href="#system">System settings</a></li>
         <li><a href="#authentication">Authentication</a></li>
+        <li><a href="#plugins">Plugins</a></li>
       </ul>
       <div class="tab-content fill-width" style="padding-top: 20px;">
         <div class="tab-pane" id="system">
@@ -16,6 +17,9 @@
         <div class="tab-pane" id="authentication">
           @settings_authentication(info)
         </div>
+        <div class="tab-pane" id="plugins">
+          @settings_plugins(info)
+        </div>
       </div>
       <hr>
       <div class="align-right" style="margin-top: 20px;">
@@ -30,6 +34,9 @@ $(function(){
   if(location.hash == '#authentication'){
     $('li:has(a[href="#authentication"])').addClass('active');
     $('div#authentication').addClass('active');
+  } else if(location.hash == '#plugins'){
+    $('li:has(a[href="#plugins"])').addClass('active');
+    $('div#plugins').addClass('active');
   } else {
     $('li:has(a[href="#system"])').addClass('active');
     $('div#system').addClass('active');

src/main/twirl/gitbucket/core/admin/settings_plugins.scala.html

@@ -0,0 +1,52 @@
+@(info: Option[Any])(implicit context: gitbucket.core.controller.Context)
+<label class="strong">Plugin repositories</label>
+<fieldset>
+  <label class="checkbox">
+    <input type="checkbox" id="pluginNetworkInstall" name="pluginNetworkInstall"@if(context.settings.pluginNetworkInstall){ checked} />
+    <a href="https://plugins.gitbucket-community.org" target="_blank">plugins.gitbucket-community.org</a>
+  </label>
+</fieldset>
+<hr>
+<fieldset>
+  <label class="checkbox">
+    <input type="checkbox" id="useProxy" name="useProxy"@if(context.settings.pluginProxy.isDefined){ checked} />
+    Use proxy
+  </label>
+</fieldset>
+<div class="proxy">
+  <div class="form-group">
+    <label class="control-label col-md-2" for="proxyHost">Proxy host</label>
+    <div class="col-md-10">
+      <input type="text" id="proxyHost" name="proxy.host" class="form-control" value="@context.settings.pluginProxy.map(_.host)"/>
+      <span id="error-proxy_host" class="error"></span>
+    </div>
+  </div>
+  <div class="form-group">
+    <label class="control-label col-md-2" for="proxyPort">Proxy port</label>
+    <div class="col-md-10">
+      <input type="text" id="proxyPort" name="proxy.port" class="form-control input-mini" value="@context.settings.pluginProxy.map(_.port)"/>
+      <span id="error-proxy_port" class="error"></span>
+    </div>
+  </div>
+  <div class="form-group">
+    <label class="control-label col-md-2" for="proxyUser">Proxy user</label>
+    <div class="col-md-10">
+      <input type="text" id="proxyUser" name="proxy.user" class="form-control" value="@context.settings.pluginProxy.map(_.user)"/>
+      <span id="error-proxy_user" class="error"></span>
+    </div>
+  </div>
+  <div class="form-group">
+    <label class="control-label col-md-2" for="proxyPassword">Proxy password</label>
+    <div class="col-md-10">
+      <input type="text" id="proxyPassword" name="proxy.password" class="form-control" value="@context.settings.pluginProxy.map(_.password)"/>
+      <span id="error-proxy_password" class="error"></span>
+    </div>
+  </div>
+</div>
+<script>
+$(function(){
+  $('#useProxy').change(function(){
+    $('.proxy input').prop('disabled', !$(this).prop('checked'));
+  }).change();
+});
+</script>

src/main/twirl/gitbucket/core/admin/settings_system.scala.html

@@ -8,6 +8,10 @@
     <th>Property</th>
     <th>Value</th>
   </tr>
+  <tr>
+    <td>GITBUCKET_VERSION</td>
+    <td>@gitbucket.core.GitBucketCoreModule.getVersions.last.getVersion</td>
+  </tr>
   <tr>
     <td>GITBUCKET_HOME</td>
     <td>@gitbucket.core.util.Directory.GitBucketHome</td>
@@ -132,6 +136,21 @@
   </label>
 </fieldset>
 <!--====================================================================-->
+<!-- Show mail address -->
+<!--====================================================================-->
+<hr>
+<label class="strong">Show mail address</label>
+<fieldset>
+  <label class="radio">
+    <input type="radio" name="showMailAddress" value="true"@if(context.settings.showMailAddress){ checked}>
+    <span class="strong">Show</span> <span class="normal">- Anyone can view mail address by user's profile page.</span>
+  </label>
+  <label class="radio">
+    <input type="radio" name="showMailAddress" value="false"@if(!context.settings.showMailAddress){ checked}>
+    <span class="strong">Hide</span> <span class="normal">- Hide mail address in user's profile page.</span>
+  </label>
+</fieldset>
+<!--====================================================================-->
 <!-- Activity -->
 <!--====================================================================-->
 <hr>
@@ -163,7 +182,7 @@
 <label class="strong">SSH access</label>
 <fieldset>
   <label class="checkbox">
-    <input type="checkbox" id="ssh" name="ssh"@if(context.settings.ssh){ checked}/>
+    <input type="checkbox" id="sshEnabled" name="ssh.enabled"@if(context.settings.ssh.enabled){ checked}/>
     Enable SSH access to git repository
     <span class="muted normal">(Both SSH host and Base URL are required if SSH access is enabled)</span>
   </label>
@@ -172,15 +191,15 @@
   <div class="form-group">
     <label class="control-label col-md-2" for="sshHost">SSH host</label>
     <div class="col-md-10">
-      <input type="text" id="sshHost" name="sshHost" class="form-control" value="@context.settings.sshHost"/>
-      <span id="error-sshHost" class="error"></span>
+      <input type="text" id="sshHost" name="ssh.host" class="form-control" value="@context.settings.ssh.sshHost"/>
+      <span id="error-ssh_host" class="error"></span>
     </div>
   </div>
   <div class="form-group">
     <label class="control-label col-md-2" for="sshPort">SSH port</label>
     <div class="col-md-10">
-      <input type="text" id="sshPort" name="sshPort" class="form-control" value="@context.settings.sshPort"/>
-      <span id="error-sshPort" class="error"></span>
+      <input type="text" id="sshPort" name="ssh.port" class="form-control" value="@context.settings.ssh.sshPort"/>
+      <span id="error-ssh_port" class="error"></span>
     </div>
   </div>
 </div>
@@ -310,7 +329,7 @@ $(function(){
     }
   });
 
-  $('#ssh').change(function(){
+  $('#sshEnabled').change(function(){
     $('.ssh input').prop('disabled', !$(this).prop('checked'));
   }).change();
 

src/main/twirl/gitbucket/core/admin/user.scala.html

@@ -1,4 +1,4 @@
-@(account: Option[gitbucket.core.model.Account], error: Option[Any] = None)(implicit context: gitbucket.core.controller.Context)
+@(account: Option[gitbucket.core.model.Account], extraMailAddresses: List[String], error: Option[Any] = None)(implicit context: gitbucket.core.controller.Context)
 @gitbucket.core.html.main(if(account.isEmpty) "New user" else "Update user"){
   @gitbucket.core.admin.html.menu("users"){
     @gitbucket.core.helper.html.error(error)
@@ -50,6 +50,13 @@
             </div>
             <input type="text" name="mailAddress" id="mailAddress" class="form-control" value="@account.map(_.mailAddress)"/>
           </fieldset>
+          <fieldset class="form-group" id="extraMailAddresses">
+            <span class="strong">Additional Mail Address:</span>
+            @extraMailAddresses.zipWithIndex.map { case (mail, idx) =>
+            <input type="text" name="extraMailAddresses[@idx]" id="extraMailAddresses[@idx]" class="form-control extraMailAddress" value="@mail"/>
+            <span id="error-extraMailAddresses_@idx" class="error"></span>
+            }
+          </fieldset>
           <fieldset class="form-group">
             <label class="strong">User Type:</label>
             <label class="radio" for="userType_Normal">
@@ -94,6 +101,8 @@
 }
 <script>
 $(function(){
+  addExtraMailAddress();
+  $('#extraMailAddresses').on('change', '.extraMailAddress', checkExtraMailAddress);
   $('#update').click(function(){
     if($('#password').val() != ''){
       return confirm('Are you sure you want to change password of this user?');

src/main/twirl/gitbucket/core/admin/userlist.scala.html

@@ -26,7 +26,7 @@
               }
             </div>
             <div class="strong">
-              @helpers.avatar(account.userName, 20)
+              @helpers.avatarLink(account.userName, 20)
               <a href="@helpers.url(account.userName)">@account.userName</a>
               @if(account.isGroupAccount){
                 (Group)
@@ -39,7 +39,7 @@
               }
               @if(account.isGroupAccount){
                 @members(account.userName).map { userName =>
-                  @helpers.avatar(userName, 20, tooltip = true)
+                  @helpers.avatarLink(userName, 20, tooltip = true)
                 }
               }
             </div>

src/main/twirl/gitbucket/core/dashboard/issues.scala.html

@@ -5,10 +5,9 @@
   condition: gitbucket.core.service.IssuesService.IssueSearchCondition,
   filter: String,
   groups: List[String],
-  recentRepositories: List[gitbucket.core.service.RepositoryService.RepositoryInfo],
-  userRepositories: List[gitbucket.core.service.RepositoryService.RepositoryInfo])(implicit context: gitbucket.core.controller.Context)
+  recentRepositories: List[gitbucket.core.service.RepositoryService.RepositoryInfo])(implicit context: gitbucket.core.controller.Context)
 @gitbucket.core.html.main("Issues"){
-  @gitbucket.core.dashboard.html.sidebar(recentRepositories, userRepositories){
+  @gitbucket.core.dashboard.html.sidebar(recentRepositories){
     @gitbucket.core.dashboard.html.tab("issues")
     <div class="container">
       @gitbucket.core.dashboard.html.issuesnavi("issues", filter, openCount, closedCount, condition)

src/main/twirl/gitbucket/core/dashboard/pulls.scala.html

@@ -5,10 +5,9 @@
   condition: gitbucket.core.service.IssuesService.IssueSearchCondition,
   filter: String,
   groups: List[String],
-  recentRepositories: List[gitbucket.core.service.RepositoryService.RepositoryInfo],
-  userRepositories: List[gitbucket.core.service.RepositoryService.RepositoryInfo])(implicit context: gitbucket.core.controller.Context)
+  recentRepositories: List[gitbucket.core.service.RepositoryService.RepositoryInfo])(implicit context: gitbucket.core.controller.Context)
 @gitbucket.core.html.main("Pull requests"){
-  @gitbucket.core.dashboard.html.sidebar(recentRepositories, userRepositories){
+  @gitbucket.core.dashboard.html.sidebar(recentRepositories){
     @gitbucket.core.dashboard.html.tab("pulls")
     <div class="container">
       @gitbucket.core.dashboard.html.issuesnavi("pulls", filter, openCount, closedCount, condition)

src/main/twirl/gitbucket/core/dashboard/repos.scala.html

@@ -0,0 +1,71 @@
+@(groups: List[String],
+  visibleRepositories: List[gitbucket.core.service.RepositoryService.RepositoryInfo],
+  recentRepositories: List[gitbucket.core.service.RepositoryService.RepositoryInfo])(implicit context: gitbucket.core.controller.Context)
+@import gitbucket.core.view.helpers
+@gitbucket.core.html.main("Repositories"){
+  @gitbucket.core.dashboard.html.sidebar(recentRepositories){
+    @gitbucket.core.dashboard.html.tab("repos")
+    <div class="container">
+      <div class="btn-group" id="owner-dropdown">
+        <button id="test" class="dropdown-toggle btn btn-default" data-toggle="dropdown" aria-expanded="false">
+          <span class="strong">All</span>
+          <span class="caret"></span>
+        </button>
+        <ul class="dropdown-menu">
+          <li><a href="javascript:void(0);" data-name=""><i class="octicon octicon-check"></i><span>All</span></a></li>
+          @visibleRepositories.map(_.owner).distinct.map { userName =>
+            <li><a href="javascript:void(0);" data-name="@userName"><i class="octicon"></i><span>@helpers.avatar(userName, 20) @userName</span></a></li>
+          }
+        </ul>
+      </div>
+      @if(visibleRepositories.isEmpty){
+        No repositories
+      } else {
+        @visibleRepositories.map { repository =>
+          <div class="block" data-owner="@repository.owner">
+            <div class="repository-icon">
+              @gitbucket.core.helper.html.repositoryicon(repository, true)
+            </div>
+            <div class="repository-content">
+              <div class="block-header">
+                <a href="@helpers.url(repository)">@repository.owner/@repository.name</a>
+                @if(repository.repository.isPrivate){
+                  <i class="octicon octicon-lock"></i>
+                }
+              </div>
+              @if(repository.repository.originUserName.isDefined){
+                <div class="small muted">forked from <a href="@context.path/@repository.repository.parentUserName/@repository.repository.parentRepositoryName">@repository.repository.parentUserName/@repository.repository.parentRepositoryName</a></div>
+              }
+              @if(repository.repository.description.isDefined){
+                <div>@repository.repository.description</div>
+              }
+              <div><span class="muted small">Updated @gitbucket.core.helper.html.datetimeago(repository.repository.lastActivityDate)</span></div>
+            </div>
+          </div>
+        }
+      }
+    </div>
+  }
+}
+<script>
+$('#owner-dropdown a').click(function(){
+  var userName = $(this).data('name');
+
+  $('#owner-dropdown i').attr('class', 'octicon');
+  $(this).find('i').attr('class', 'octicon octicon-check');
+
+  $('#owner-dropdown span.strong').html($(this).find('span').html());
+
+  $('div.block').each(function(i, e){
+    if(userName == ''){
+      $(e).show();
+    } else {
+      if($(e).data('owner') == userName){
+        $(e).show();
+      } else {
+        $(e).hide();
+      }
+    }
+  });
+});
+</script>

src/main/twirl/gitbucket/core/dashboard/sidebar.scala.html

@@ -1,29 +1,8 @@
-@(recentRepositories: List[gitbucket.core.service.RepositoryService.RepositoryInfo],
-  userRepositories: List[gitbucket.core.service.RepositoryService.RepositoryInfo])(body: Html)(implicit context: gitbucket.core.controller.Context)
+@(recentRepositories: List[gitbucket.core.service.RepositoryService.RepositoryInfo])(body: Html)(implicit context: gitbucket.core.controller.Context)
 @import gitbucket.core.view.helpers
 <div class="main-sidebar">
   <div class="sidebar">
   <ul class="nav sidebar-menu">
-  @if(context.loginAccount.isDefined){
-    <li class="header">
-      <span class="label label-primary pull-right">@userRepositories.size</span>
-      Your repositories
-    </li>
-    @if(userRepositories.isEmpty){
-      <li>No repositories</li>
-    } else {
-      <li><form class="sidebar-form"><input type="text" id="filter-box" class="form-control input-sm" placeholder="Find repository"/></form></li>
-      @userRepositories.zipWithIndex.map { case (repository, i) =>
-        <li class="repo-link menu-item-hover">
-          @if(repository.owner == context.loginAccount.get.userName){
-            <a href="@helpers.url(repository)">@gitbucket.core.helper.html.repositoryicon(repository, false) <span class="strong">@repository.name</span></a>
-          } else {
-          <a href="@helpers.url(repository)">@gitbucket.core.helper.html.repositoryicon(repository, false) <span>@repository.owner/<span class="strong">@repository.name</span></span></a>
-          }
-        </li>
-      }
-    }
-  } else {
     <li class="header">Recent updated repositories</li>
     @if(recentRepositories.isEmpty){
       <li>No repositories</li>
@@ -35,7 +14,6 @@
         </li>
       }
     }
-  }
   </ul>
   </div>
 </div>

src/main/twirl/gitbucket/core/dashboard/tab.scala.html

@@ -2,6 +2,7 @@
 <ul class="nav nav-tabs" style="margin-bottom: 20px;">
   <li @if(active == ""){ class="active"}><a href="@context.path/">News feed</a></li>
   @if(context.loginAccount.isDefined){
+    <li @if(active == "repos" ){ class="active"}><a href="@context.path/dashboard/repos">Repositories</a></li>
     <li @if(active == "pulls" ){ class="active"}><a href="@context.path/dashboard/pulls">Pull requests</a></li>
     <li @if(active == "issues"){ class="active"}><a href="@context.path/dashboard/issues">Issues</a></li>
     @gitbucket.core.plugin.PluginRegistry().getDashboardTabs.map { tab =>

src/main/twirl/gitbucket/core/helper/activities.scala.html

@@ -67,7 +67,7 @@
   <div>
     <div class="muted small">@gitbucket.core.helper.html.datetimeago(activity.activityDate)</div>
     <div class="strong">
-      @helpers.avatar(activity.activityUserName, 16)
+      @helpers.avatarLink(activity.activityUserName, 16)
       @helpers.activityMessage(activity.message)
     </div>
     @activity.additionalInfo.map { additionalInfo =>
@@ -83,7 +83,7 @@
   <div>
     <div class="muted small">@gitbucket.core.helper.html.datetimeago(activity.activityDate)</div>
     <div class="strong">
-      @helpers.avatar(activity.activityUserName, 16)
+      @helpers.avatarLink(activity.activityUserName, 16)
       @helpers.activityMessage(activity.message)
     </div>
     @additionalInfo
@@ -97,7 +97,7 @@
   <div>
     <span class="muted small">@gitbucket.core.helper.html.datetimeago(activity.activityDate)</span>
     <div>
-      @helpers.avatar(activity.activityUserName, 16)
+      @helpers.avatarLink(activity.activityUserName, 16)
       @helpers.activityMessage(activity.message)
     </div>
   </div>

src/main/twirl/gitbucket/core/helper/commitcomment.scala.html

@@ -3,43 +3,34 @@
   repository: gitbucket.core.service.RepositoryService.RepositoryInfo,
   latestCommitId: Option[String] = None)(implicit context: gitbucket.core.controller.Context)
 @import gitbucket.core.view.helpers
-<div class="@if(comment.fileName.isDefined && (!latestCommitId.isDefined || latestCommitId.get == comment.commitId)){inline-comment}"
-    id="discussion_r@comment.commentId"
-    @if(comment.fileName.isDefined){filename="@comment.fileName.get"}
-    @if(comment.newLine.isDefined){newline="@comment.newLine.get"}
-    @if(comment.oldLine.isDefined){oldline="@comment.oldLine.get"}>
-  <div class="panel panel-default commit-comment-box commit-comment-@comment.commentId">
-    <div class="panel-heading">
-      @helpers.avatar(comment.commentedUserName, 20)
-      @helpers.user(comment.commentedUserName, styleClass="username strong")
-        <span class="muted">
-          commented on
-          @if(comment.issueId.isDefined){
-            <a href="@helpers.url(repository)/pull/@comment.issueId">#@comment.issueId</a>
-          }
-          @comment.fileName.map { fileName =>
-            @fileName in
-          }
-          <a href="@context.path/@repository.owner/@repository.name/commit/@comment.commitId">@comment.commitId.substring(0, 7)</a>
-          @gitbucket.core.helper.html.datetimeago(comment.registeredDate)
-        </span>
-      <span class="pull-right">
+<div class="commit-comment-box @if(latestCommitId.contains(comment.commitId)){inline-comment}" id="discussion_r@comment.commentId"
+  @if(comment.fileName.isDefined){filename="@comment.fileName.get"}
+  @if(comment.newLine.isDefined){newline="@comment.newLine.get"}
+  @if(comment.oldLine.isDefined){oldline="@comment.oldLine.get"}>
+  <div class="commit-comment-@comment.commentId">
+    <div class="markdown-body">
+      <div>
+        @helpers.avatarLink(comment.commentedUserName, 20)
+        @helpers.user(comment.commentedUserName, styleClass="username strong")
+        <span class="muted">@gitbucket.core.helper.html.datetimeago(comment.registeredDate)</span>
+        <span class="pull-right">
         @if(hasWritePermission || context.loginAccount.map(_.userName == comment.commentedUserName).getOrElse(false)){
           <a href="#" data-comment-id="@comment.commentId"><i class="octicon octicon-pencil"></i></a>&nbsp;
           <a href="#" data-comment-id="@comment.commentId"><i class="octicon octicon-x"></i></a>
         }
-      </span>
-    </div>
-    <div class="panel-body issue-content commit-commentContent-@comment.commentId markdown-body">
-      @helpers.markdown(
-        markdown = comment.content,
-        repository = repository,
-        enableWikiLink = false,
-        enableRefsLink = true,
-        enableLineBreaks = true,
-        enableTaskList = false,
-        hasWritePermission = hasWritePermission
-      )
+        </span>
+      </div>
+      <div class="commit-commentContent-@comment.commentId">
+        @helpers.markdown(
+          markdown = comment.content,
+          repository = repository,
+          enableWikiLink = false,
+          enableRefsLink = true,
+          enableLineBreaks = true,
+          enableTaskList = true,
+          hasWritePermission = hasWritePermission
+        )
+      </div>
     </div>
   </div>
 </div>

src/main/twirl/gitbucket/core/helper/commitcomments.scala.html

@@ -0,0 +1,32 @@
+@(comments: gitbucket.core.model.CommitComments,
+  hasWritePermission: Boolean,
+  repository: gitbucket.core.service.RepositoryService.RepositoryInfo,
+  latestCommitId: Option[String] = None)(implicit context: gitbucket.core.controller.Context)
+@import gitbucket.core.view.helpers
+<div class="panel panel-default">
+  <div class="panel-heading">
+    <span class="monospace">@comments.fileName</span>
+    @if(!latestCommitId.contains(comments.comments.head.commitId)) {
+      <span class="pull-right"><a href="javascript:void(0);" onclick="$('.fold-comments-@comments.comments.head.commentId').toggle();"><i class="octicon octicon-unfold"></i></a></span>
+    }
+  </div>
+  <div style="@if(!latestCommitId.contains(comments.comments.head.commitId)){display: none;}" class="fold-comments-@comments.comments.head.commentId">
+    @comments.diff.map(helpers.diff)
+    <div class="panel-body">
+    @comments.comments.map { comment =>
+      @gitbucket.core.helper.html.commitcomment(comment, hasWritePermission, repository, latestCommitId)
+    }
+    </div>
+  </div>
+</div>
+
+@if(!latestCommitId.contains(comments.comments.head.commitId)) {
+  <script>
+    $(function(){
+      var foldComments = $('.fold-comments-@comments.comments.head.commentId');
+      if(foldComments.find('input:checkbox:not(:checked)').length > 0){
+        foldComments.show();
+      }
+    });
+  </script>
+}

src/main/twirl/gitbucket/core/helper/diff.scala.html

@@ -16,9 +16,9 @@
     @if(oldCommitId.isDefined && newCommitId.isDefined) {
       <a href="@helpers.url(repository)/patch/@oldCommitId...@newCommitId" class="btn btn-default">Patch</a>
     }
-    <div class="btn-group" data-toggle="buttons">
-      <input type="button" id="btn-unified" class="btn btn-default active" value="Unified">
-      <input type="button" id="btn-split" class="btn btn-default" value="Split">
+    <div class="btn-group">
+      <a href="javascript:changeDisplaySetting('diff', 'unified');" id="btn-unified" class="btn btn-default">Unified</a>
+      <a href="javascript:changeDisplaySetting('diff', 'split');" id="btn-split" class="btn btn-default">Split</a>
     </div>
   </div>
   Showing <a href="javascript:void(0);" id="toggle-file-list">@diffs.size changed @helpers.plural(diffs.size, "file")</a>
@@ -103,8 +103,8 @@
         } else {
           @if(diff.newContent != None || diff.oldContent != None){
             <div id="diffText-@i" class="diffText"></div>
-            <textarea id="newText-@i" style="display: none;" data-file-name="@diff.oldPath">@diff.newContent.getOrElse("")</textarea>
-            <textarea id="oldText-@i" style="display: none;" data-file-name="@diff.newPath">@diff.oldContent.getOrElse("")</textarea>
+            <input type="hidden" id="newText-@i" data-file-name="@diff.oldPath" value="@diff.newContent">
+            <input type="hidden" id="oldText-@i" data-file-name="@diff.newPath" value="@diff.oldContent">
           } else {
             @if(diff.newIsImage || diff.oldIsImage){
               <div class="diff-image-render diff2up">
@@ -151,29 +151,22 @@ $(function(){
     });
   }
 
+  window.params = {};
+
   // Render diffs as unified mode initially
   if(("&" + location.search.substring(1)).indexOf("&w=1") != -1){
-    $('.ignore-whitespace').prop('checked',true);
+    $('.ignore-whitespace').prop('checked', true);
+    window.params['w'] = 1;
   }
-  window.viewType = 1;
   if(("&" + location.search.substring(1)).indexOf("&diff=split") != -1){
     window.viewType = 0;
-  }
-  renderDiffs();
-
-  $('#btn-unified').click(function(){
+    $('#btn-split').addClass('active');
+    window.params['diff'] = 'split';
+  } else {
     window.viewType = 1;
     $('#btn-unified').addClass('active');
-    $('#btn-split').removeClass('active');
-    renderDiffs();
-  });
-
-  $('#btn-split').click(function(){
-    window.viewType = 0;
-    $('#btn-unified').removeClass('active');
-    $('#btn-split').addClass('active');
-    renderDiffs();
-  });
+  }
+  renderDiffs();
 
   $('.toggle-notes').change(function() {
     if (!$(this).prop('checked')) {
@@ -183,14 +176,14 @@ $(function(){
   });
 
   $('.ignore-whitespace').change(function() {
-    renderOneDiff($(this).closest("table").find(".diffText"), viewType);
+    renderOneDiff($(this).closest("table").find(".diffText"), window.viewType);
   });
 
   function getInlineContainer(where) {
-    if (viewType == 0) {
+    if (window.viewType == 0) {
       if (where === 'new') {
         return $('<tr class="not-diff"><td colspan="2"></td><td colspan="2" class="comment-box-container"></td></tr>');
-      } else if (where === 'old') {
+      } else {
         return $('<tr class="not-diff"><td colspan="2" class="comment-box-container"></td><td colspan="2"></td></tr>');
       }
     }
@@ -245,7 +238,7 @@ $(function(){
       var commitId = $this.closest('.table-bordered').attr('commitId'),
       fileName = $this.closest('.table-bordered').attr('fileName'),
       oldLineNumber, newLineNumber;
-      if (viewType == 0) {
+      if (window.viewType == 0) {
         oldLineNumber = $this.parent().prev('.oldline').attr('line-number');
         newLineNumber = $this.parent().prev('.newline').attr('line-number');
       } else {
@@ -274,7 +267,7 @@ $(function(){
   });
 
   function renderOneCommitCommentIntoDiff($v, diff){
-    var filename = $v.attr('filename');
+    //var filename = $v.attr('filename');
     var oldline  = $v.attr('oldline');
     var newline  = $v.attr('newline');
     var tmp;
@@ -335,7 +328,11 @@ $(function(){
         .append(renderStatBar(add, del).attr('title', (add + del) + " lines changed").tooltip());
 
     @if(hasWritePermission) {
-      diffText.find('.body').each(function(){ $('<b class="add-comment">+</b>').prependTo(this); });
+      diffText.find('.body').filter(function(i, e) {
+        return $(e).has('span').length > 0;
+      }).each(function(){
+        $('<b class="add-comment">+</b>').prependTo(this);
+      });
     }
     @if(showLineNotes){
       var fileName = table.attr('filename');
@@ -365,14 +362,14 @@ $(function(){
     });
     for(var key in elements){
       filename = elements[key]['filename'];
-      oldline = elements[key]['oldline'];
-      newline = elements[key]['newline'];
+      oldline = elements[key]['oldline']; //? elements[key]['oldline'] : '';
+      newline = elements[key]['newline']; //? elements[key]['newline'] : '';
 
       var $v = $('<div class="commit-comment-box reply-comment-box">')
-        .append($('<input type="text" class="form-control reply-comment" placeholder="Reply...">')
-          .data('filename', filename)
-          .data('newline',  newline)
-          .data('oldline',  oldline));
+        .append($('<input type="text" class="form-control reply-comment" placeholder="Reply..." '
+                       + 'data-filename="' + filename + '" '
+                       + 'data-newline="' + newline + '" '
+                       + 'data-oldline="' + oldline + '">'));
 
       var tmp;
       if (typeof oldline !== 'undefined') {
@@ -394,7 +391,7 @@ $(function(){
     var i = 0, diffs = $('.diffText');
     function render(){
       if(diffs[i]){
-        var $table = renderOneDiff($(diffs[i]), viewType);
+        var $table = renderOneDiff($(diffs[i]), window.viewType);
         @if(hasWritePermission) {
           renderReplyComment($table);
         }
@@ -405,4 +402,19 @@ $(function(){
     render();
   }
 });
+
+function changeDisplaySetting(key, value){
+  var url = '';
+  window.params[key] = value;
+  for(key in window.params){
+    if(window.params[key] != ''){
+      if(url != ''){
+        url = url + '&' + key + '=' + window.params[key];
+      } else {
+        url = url + '?' + key + '=' + window.params[key];
+      }
+    }
+  }
+  location.href = url;
+}
 </script>

src/main/twirl/gitbucket/core/helper/forkrepository.scala.html

@@ -1,18 +1,24 @@
 @(repository: gitbucket.core.service.RepositoryService.RepositoryInfo,
-  groupAndPerm: Map[String, Boolean])(implicit context: gitbucket.core.controller.Context)
+  groupAndPerm: Seq[(String, Boolean)])(implicit context: gitbucket.core.controller.Context)
 @import gitbucket.core.view.helpers
-<h2 class="facebox-header">Where should we fork this repository?</h2>
+<h2 class="facebox-header">
+  Where should we fork this repository?
+  <a class="btn btn-default btn-sm" href="@helpers.url(repository)/network/members">Show forks</a>
+</h2>
 <form action="@helpers.url(repository)/fork" id="fork" method="post">
-  <div class="owner-select-grid">
-    <div class="owner-select-target js-fork-owner-select-target enabled">@helpers.avatar(context.loginAccount.get.userName, 100)<span class="owner css-truncate" title="@@@context.loginAccount.get.userName">@@@context.loginAccount.get.userName</span></div>
-    @for((groupName, isManager) <- groupAndPerm) {
-      @if(isManager) {
-        <div class="owner-select-target js-fork-owner-select-target enabled">@helpers.avatar(groupName, 100)<span class="owner css-truncate" title="@@@groupName">@@@groupName</span></div>
-      } else {
-        <div title="You don't have permission to fork here."  class="owner-select-target js-fork-owner-select-target disabled">@helpers.avatar(groupName, 100)<span class="owner css-truncate" title="@@@groupName">@@@groupName</span></div>
-      }
-    }
-    </div>
+  <div class="block">
+    @helpers.avatar(context.loginAccount.get.userName, 24) <a href="javascript:void(0);" class="js-fork-owner-select-target">@@@context.loginAccount.get.userName</a>
   </div>
+  @for((groupName, isManager) <- groupAndPerm) {
+    @if(isManager) {
+      <div class="block js-fork-owner-select-target">
+        @helpers.avatar(groupName, 24) <a href="javascript:void(0);" class="js-fork-owner-select-target">@@@groupName</a>
+      </div>
+    } else {
+      <div class="block" title="You don't have permission to fork here.">
+        @helpers.avatar(groupName, 24) <span class="muted">@@@groupName</span>
+      </div>
+    }
+  }
   <input id="account" name="account" type="hidden" />
-</form>
+</form>

src/main/twirl/gitbucket/core/helper/preview.scala.html

@@ -10,12 +10,13 @@
   styleClass: String = "",
   placeholder: String = "Leave a comment",
   elastic: Boolean = false,
+  focus: Boolean = false,
   tabIndex: Int = -2,
   uid: Long = new java.util.Date().getTime())(implicit context: gitbucket.core.controller.Context)
 @import gitbucket.core.view.helpers
 <div class="tabbable">
   <ul class="nav nav-tabs fill-width" style="margin-bottom: 10px;">
-    <li class="active"><a href="#tab@uid" data-toggle="tab">Write</a></li>
+    <li class="active"><a href="#tab@uid" data-toggle="tab" id="write@uid">Write</a></li>
     <li><a href="#tab@(uid + 1)" data-toggle="tab" id="preview@uid">Preview</a></li>
   </ul>
   <div class="tab-content">
@@ -46,6 +47,13 @@ $(function(){
     $('#content@uid').elastic();
     $('#content@uid').trigger('blur');
   }
+  @if(focus){
+    $('#content@uid').trigger('focus');
+  }
+
+  $('#write@uid').on('shown.bs.tab', function(){
+    $('#content@uid').trigger('focus');
+  });
 
   $('#preview@uid').click(function(){
     $('#preview-area@uid').html('<img src="@helpers.assets("/common/images/indicator.gif")"> Previewing...');
@@ -57,6 +65,7 @@ $(function(){
       enableTaskList   : @enableTaskList
     }, function(data){
       $('#preview-area@uid').html(data);
+      $('#preview-area@uid input').prop('disabled', true);
       prettyPrint();
     });
   });

src/main/twirl/gitbucket/core/index.scala.html

@@ -1,10 +1,9 @@
 @(activities: List[gitbucket.core.model.Activity],
   recentRepositories: List[gitbucket.core.service.RepositoryService.RepositoryInfo],
-  userRepositories: List[gitbucket.core.service.RepositoryService.RepositoryInfo],
   showBannerToCreatePersonalAccessToken: Boolean)(implicit context: gitbucket.core.controller.Context)
 @import gitbucket.core.view.helpers
 @gitbucket.core.html.main("GitBucket"){
-  @gitbucket.core.dashboard.html.sidebar(recentRepositories, userRepositories){
+  @gitbucket.core.dashboard.html.sidebar(recentRepositories){
     @context.settings.information.map { information =>
       <div class="alert alert-info" style="background-color: white; color: #555; border-color: #4183c4; font-size: small; line-height: 120%;">
         <button type="button" class="close" data-dismiss="alert">&times;</button>

src/main/twirl/gitbucket/core/issues/commentform.scala.html

@@ -22,23 +22,23 @@
           elastic            = true,
           tabIndex           = 1
         )
-          <div class="text-right">
-            <input type="hidden" name="issueId" value="@issue.issueId"/>
-            @if((reopenable || !issue.closed) && (isManageable || issue.openedUserName == context.loginAccount.get.userName)){
-              <input type="hidden" id="action" name="action" value="comment"/>
-              <div class="btn-group dropup">
-                <input type="submit" class="btn btn-success" tabindex="2" formaction="@helpers.url(repository)/issue_comments/new" value="Comment" id="submit-button"/>
-                <button type="button" class="btn btn-success dropdown-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">
-                  <span class="caret"></span>
-                </button>
-              <ul class="dropdown-menu dropdown-menu-right">
-                <li><a id="menu-comment">Comment</a></li>
-                <li><a id="menu-x-and-comment">@{if(issue.closed) "Reopen" else "Close"} and comment</a></li>
-              </ul>
-              </div>
-            } else {
-              <input type="submit" class="btn btn-success" tabindex="2" formaction="@helpers.url(repository)/issue_comments/new" value="Comment"/>
-            }
+        <div class="text-right">
+          <input type="hidden" name="issueId" value="@issue.issueId"/>
+          @if((reopenable || !issue.closed) && (isManageable || issue.openedUserName == context.loginAccount.get.userName)){
+            <input type="hidden" id="action" name="action" value="comment"/>
+            <div class="btn-group dropup">
+              <input type="submit" class="btn btn-success" tabindex="2" formaction="@helpers.url(repository)/issue_comments/new" value="Comment" id="submit-button"/>
+              <button type="button" class="btn btn-success dropdown-toggle" data-toggle="dropdown" aria-haspopup="true" aria-expanded="false">
+                <span class="caret"></span>
+              </button>
+            <ul class="dropdown-menu dropdown-menu-right">
+              <li><a id="menu-comment">Comment</a></li>
+              <li><a id="menu-x-and-comment">@{if(issue.closed) "Reopen" else "Close"} and comment</a></li>
+            </ul>
+            </div>
+          } else {
+            <input type="submit" class="btn btn-success" tabindex="2" formaction="@helpers.url(repository)/issue_comments/new" value="Comment"/>
+          }
         </div>
       </div>
     </div>

src/main/twirl/gitbucket/core/issues/commentlist.scala.html

@@ -2,42 +2,43 @@
   comments: List[gitbucket.core.model.Comment],
   isManageable: Boolean,
   repository: gitbucket.core.service.RepositoryService.RepositoryInfo,
-  pullreq: Option[gitbucket.core.model.PullRequest] = None)(implicit context: gitbucket.core.controller.Context)
+  pullreq: Option[gitbucket.core.model.PullRequest] = None,
+  commitId: Option[String] = None,
+  renderScript: Boolean = true)(implicit context: gitbucket.core.controller.Context)
 @import gitbucket.core.view.helpers
-@import gitbucket.core.model.CommitComment
 @issueOrPullRequest()={ @if(issue.exists(_.isPullRequest))( "pull request" )else( "issue" ) }
-@showFormatedComment(comment: gitbucket.core.model.IssueComment)={
+@showFormattedComment(comment: gitbucket.core.model.IssueComment)={
 <div class="panel panel-default issue-comment-box" id="comment-@comment.commentId">
   <div class="panel-heading">
-    @helpers.avatar(comment.commentedUserName, 20)
+    @helpers.avatarLink(comment.commentedUserName, 20)
     @helpers.user(comment.commentedUserName, styleClass="username strong")
     <span class="muted">
-                    @if(comment.action == "comment"){
-                      commented
-                    } else {
-                      referenced the @issueOrPullRequest()
-                    }
-                    <a href="#comment-@comment.commentId">
-                      @gitbucket.core.helper.html.datetimeago(comment.registeredDate)
-                    </a>
-                  </span>
+      @if(comment.action == "comment"){
+        commented
+      } else {
+        referenced the @issueOrPullRequest()
+      }
+      <a href="#comment-@comment.commentId">
+        @gitbucket.core.helper.html.datetimeago(comment.registeredDate)
+      </a>
+    </span>
     @if(comment.action != "commit" && comment.action != "merge" && comment.action != "refer"
     && (isManageable || context.loginAccount.map(_.userName == comment.commentedUserName).getOrElse(false))){
-    <span class="pull-right">
-                      <a href="#" data-comment-id="@comment.commentId"><i class="octicon octicon-pencil" aria-label="Edit"></i></a>&nbsp;
-                      <a href="#" data-comment-id="@comment.commentId"><i class="octicon octicon-x" aria-label="Remove"></i></a>
-                    </span>
+      <span class="pull-right">
+        <a href="#" data-comment-id="@comment.commentId"><i class="octicon octicon-pencil" aria-label="Edit"></i></a>&nbsp;
+        <a href="#" data-comment-id="@comment.commentId"><i class="octicon octicon-x" aria-label="Remove"></i></a>
+      </span>
     }
   </div>
-  <div class="panel-body issue-content markdown-body" id="commentContent-@comment.commentId">
+  <div class="panel-body markdown-body" id="commentContent-@comment.commentId">
     @helpers.markdown(
-    markdown = comment.content,
-    repository = repository,
-    enableWikiLink = false,
-    enableRefsLink = true,
-    enableLineBreaks = true,
-    enableTaskList = true,
-    hasWritePermission = isManageable
+      markdown = comment.content,
+      repository = repository,
+      enableWikiLink = false,
+      enableRefsLink = true,
+      enableLineBreaks = true,
+      enableTaskList = true,
+      hasWritePermission = isManageable
     )
   </div>
 </div>
@@ -45,7 +46,7 @@
 @if(issue.isDefined){
   <div class="panel panel-default issue-comment-box">
     <div class="panel-heading">
-      @helpers.avatar(issue.get.openedUserName, 20)
+      @helpers.avatarLink(issue.get.openedUserName, 20)
       @helpers.user(issue.get.openedUserName, styleClass="username strong")
       <span class="muted">commented @gitbucket.core.helper.html.datetimeago(issue.get.registeredDate)</span>
       <span class="pull-right">
@@ -54,7 +55,7 @@
         }
       </span>
     </div>
-    <div class="panel-body issue-content markdown-body" id="issueContent">
+    <div class="panel-body markdown-body" id="issueContent">
       @helpers.markdown(
         markdown = issue.get.content getOrElse "No description provided.",
         repository = repository,
@@ -81,7 +82,7 @@
           <div class="discussion-item discussion-item-commit">
             <div class="discussion-item-header">
               <span class="discussion-item-icon"><i class="octicon octicon-bookmark"></i></span>
-              @helpers.avatar(comment.commentedUserName, 16)
+              @helpers.avatarLink(comment.commentedUserName, 16)
               @helpers.user(comment.commentedUserName, styleClass="username strong")
               added a commit that referenced this @issueOrPullRequest()
               @gitbucket.core.helper.html.datetimeago(comment.registeredDate)
@@ -104,7 +105,7 @@
         <div class="discussion-item discussion-item-refer">
           <div class="discussion-item-header">
             <span class="discussion-item-icon"><i class="octicon octicon-bookmark"></i></span>
-            @helpers.avatar(comment.commentedUserName, 16)
+            @helpers.avatarLink(comment.commentedUserName, 16)
             @helpers.user(comment.commentedUserName, styleClass="username strong")
             referenced the @issueOrPullRequest()
             @gitbucket.core.helper.html.datetimeago(comment.registeredDate)
@@ -117,11 +118,11 @@
         </div>
       }
       case "merge" => {
-        @showFormatedComment(comment)
+        @showFormattedComment(comment)
         <div class="discussion-item discussion-item-merge">
           <div class="discussion-item-header">
             <span class="discussion-item-icon"><i class="octicon octicon-git-merge"></i></span>
-            @helpers.avatar(comment.commentedUserName, 16)
+            @helpers.avatarLink(comment.commentedUserName, 16)
             @helpers.user(comment.commentedUserName, styleClass="username strong")
             merged commit
             <code>@pullreq.map(_.commitIdTo.substring(0, 7))</code> into
@@ -136,12 +137,12 @@
       }
       case "close" | "close_comment" => {
         @if(comment.action == "close_comment"){
-          @showFormatedComment(comment)
+          @showFormattedComment(comment)
         }
         <div class="discussion-item discussion-item-close">
           <div class="discussion-item-header">
             <span class="discussion-item-icon"><i class="octicon octicon-circle-slash"></i></span>
-            @helpers.avatar(comment.commentedUserName, 16)
+            @helpers.avatarLink(comment.commentedUserName, 16)
             @helpers.user(comment.commentedUserName, styleClass="username strong")
             closed this @issueOrPullRequest()
             @gitbucket.core.helper.html.datetimeago(comment.registeredDate)
@@ -150,12 +151,12 @@
       }
       case "reopen" | "reopen_comment" => {
         @if(comment.action == "reopen_comment"){
-          @showFormatedComment(comment)
+          @showFormattedComment(comment)
         }
         <div class="discussion-item discussion-item-reopen">
           <div class="discussion-item-header">
             <span class="discussion-item-icon"><i class="octicon octicon-primitive-dot"></i></span>
-            @helpers.avatar(comment.commentedUserName, 16)
+            @helpers.avatarLink(comment.commentedUserName, 16)
             @helpers.user(comment.commentedUserName, styleClass="username strong")
             reopened the @issueOrPullRequest()
             @gitbucket.core.helper.html.datetimeago(comment.registeredDate)
@@ -166,7 +167,7 @@
         <div class="discussion-item discussion-item-delete_branch">
           <div class="discussion-item-header">
             <span class="discussion-item-icon"><i class="octicon octicon-git-branch"></i></span>
-            @helpers.avatar(comment.commentedUserName, 16)
+            @helpers.avatarLink(comment.commentedUserName, 16)
             @helpers.user(comment.commentedUserName, styleClass="username strong")
             deleted the <code>@pullreq.map(_.requestBranch)</code> branch
             @gitbucket.core.helper.html.datetimeago(comment.registeredDate)
@@ -177,7 +178,7 @@
         <div class="discussion-item discussion-item-add-label">
           <div class="discussion-item-header">
             <span class="discussion-item-icon"><i class="octicon octicon-tag"></i></span>
-            @helpers.avatar(comment.commentedUserName, 16)
+            @helpers.avatarLink(comment.commentedUserName, 16)
             @helpers.user(comment.commentedUserName, styleClass="username strong")
             add the <code>@comment.content</code> label
             @gitbucket.core.helper.html.datetimeago(comment.registeredDate)
@@ -188,7 +189,7 @@
         <div class="discussion-item discussion-item-delete-label">
           <div class="discussion-item-header">
             <span class="discussion-item-icon"><i class="octicon octicon-tag"></i></span>
-            @helpers.avatar(comment.commentedUserName, 16)
+            @helpers.avatarLink(comment.commentedUserName, 16)
             @helpers.user(comment.commentedUserName, styleClass="username strong")
             removed the <code>@comment.content</code> label
             @gitbucket.core.helper.html.datetimeago(comment.registeredDate)
@@ -199,7 +200,7 @@
         <div class="discussion-item discussion-item-change-priority">
           <div class="discussion-item-header">
             <span class="discussion-item-icon"><i class="octicon octicon-flame"></i></span>
-            @helpers.avatar(comment.commentedUserName, 16)
+            @helpers.avatarLink(comment.commentedUserName, 16)
             @helpers.user(comment.commentedUserName, styleClass="username strong")
             change priority from <code>@comment.content.split(":")(0)</code> to <code>@comment.content.split(":")(1)</code>
             @gitbucket.core.helper.html.datetimeago(comment.registeredDate)
@@ -210,7 +211,7 @@
         <div class="discussion-item discussion-item-change-milestone">
           <div class="discussion-item-header">
             <span class="discussion-item-icon"><i class="octicon octicon-milestone"></i></span>
-            @helpers.avatar(comment.commentedUserName, 16)
+            @helpers.avatarLink(comment.commentedUserName, 16)
             @helpers.user(comment.commentedUserName, styleClass="username strong")
             change milestone from <code>@comment.content.split(":")(0)</code> to <code>@comment.content.split(":")(1)</code>
             @gitbucket.core.helper.html.datetimeago(comment.registeredDate)
@@ -221,22 +222,65 @@
         <div class="discussion-item discussion-item-assign">
           <div class="discussion-item-header">
             <span class="discussion-item-icon"><i class="octicon octicon-person"></i></span>
-            @helpers.avatar(comment.commentedUserName, 16)
+            @helpers.avatarLink(comment.commentedUserName, 16)
             @helpers.user(comment.commentedUserName, styleClass="username strong")
             change assignee from <code>@comment.content.split(":")(0)</code> to <code>@comment.content.split(":")(1)</code>
             @gitbucket.core.helper.html.datetimeago(comment.registeredDate)
           </div>
         </div>
       }
+      case "change_title" => {
+        <div class="discussion-item discussion-item-pencil">
+          <div class="discussion-item-header">
+            <span class="discussion-item-icon"><i class="octicon octicon-pencil"></i></span>
+            @helpers.avatar(comment.commentedUserName, 16)
+            @helpers.user(comment.commentedUserName, styleClass="username strong")
+            change title from <code>@comment.content.split("\r\n")(0)</code> to <code>@comment.content.split("\r\n")(1)</code>
+            @gitbucket.core.helper.html.datetimeago(comment.registeredDate)
+          </div>
+        </div>
+      }
       case _ => {
-        @showFormatedComment(comment)
+        @showFormattedComment(comment)
       }
     }
   }
-  case comment: CommitComment => {
-    @gitbucket.core.helper.html.commitcomment(comment, isManageable, repository, pullreq.map(_.commitIdTo))
+  case comments: gitbucket.core.model.CommitComments => {
+    @gitbucket.core.helper.html.commitcomments(comments, isManageable, repository, commitId.orElse(pullreq.map(_.commitIdTo)))
+  }
+  case comment: gitbucket.core.model.CommitComment => {
+    <div class="panel panel-default commit-comment-box commit-comment-@comment.commentId">
+      <div class="panel-heading">
+        @helpers.avatarLink(comment.commentedUserName, 20)
+        @helpers.user(comment.commentedUserName, styleClass="username strong")
+        <span class="muted">
+          commented
+          <a href="#comment-@comment.commentId">@gitbucket.core.helper.html.datetimeago(comment.registeredDate)</a>
+          on
+          <a href="@helpers.url(repository)/commit/@comment.commitId" class="monospace">@comment.commitId.substring(0, 7)</a>
+        </span>
+        @if((isManageable || context.loginAccount.map(_.userName == comment.commentedUserName).getOrElse(false))){
+          <span class="pull-right">
+            <a href="#" data-comment-id="@comment.commentId"><i class="octicon octicon-pencil" aria-label="Edit"></i></a>&nbsp;
+            <a href="#" data-comment-id="@comment.commentId"><i class="octicon octicon-x" aria-label="Remove"></i></a>
+          </span>
+        }
+      </div>
+      <div class="panel-body markdown-body commit-commentContent-@comment.commentId">
+        @helpers.markdown(
+          markdown = comment.content,
+          repository = repository,
+          enableWikiLink = false,
+          enableRefsLink = true,
+          enableLineBreaks = true,
+          enableTaskList = true,
+          hasWritePermission = isManageable
+        )
+      </div>
+    </div>
   }
 }
+@if(renderScript){
 <script>
 $(function(){
 @if(issue.isDefined){
@@ -286,38 +330,33 @@ $(function(){
       $.post('@helpers.url(repository)/commit_comments/delete/' + id,
       function(data){
         if(data > 0) {
-          var comment = $('.commit-comment-' + id).closest('.not-diff');
-          if(comment.prev('.not-diff').length == 0){
-            comment.next('.not-diff').find('.reply-comment').remove();
+          var comment = $('.commit-comment-' + id);
+
+          // diff view
+          var tr = comment.closest('.not-diff');
+          if(tr.length > 0){
+            if(tr.prev('.not-diff').length == 0){
+              tr.next('.not-diff:has(.reply-comment)').remove();
+            }
+            tr.remove();
+          }
+
+          // comment list view
+          var panel = comment.closest('div.panel:has(.commit-comment-box)');
+          if(panel.length > 0){
+            comment.parent('.commit-comment-box').remove();
+            if(panel.has('.commit-comment-box').length == 0){
+              panel.remove();
+            }
+          } else {
+            comment.remove();
           }
-          comment.remove();
         }
       });
     }
     return false;
   });
 
-  var extractMarkdown = function(data){
-    $('body').append('<div id="tmp"></div>');
-    $('#tmp').html(data);
-    var markdown = $('#tmp textarea').val();
-    $('#tmp').remove();
-    return markdown;
-  };
-
-  var replaceTaskList = function(issueContentHtml, checkboxes) {
-    var ss = [],
-        markdown = extractMarkdown(issueContentHtml),
-        xs = markdown.split(/- \[[x| ]\]/g);
-    for (var i=0; i<xs.length; i++) {
-      ss.push(xs[i]);
-      if (checkboxes.eq(i).prop('checked')) ss.push('- [x]');
-      else ss.push('- [ ]');
-    }
-    ss.pop();
-    return ss.join('');
-  };
-
   $('div[class*=commit-commentContent-]').on('click', ':checkbox', function(ev){
     var $commentContent = $(ev.target).parents('div[class*=commit-commentContent-]'),
         commentId = $commentContent.attr('class').match(/commit-commentContent-.+/)[0].replace(/commit-commentContent-/, ''),
@@ -329,7 +368,7 @@ $(function(){
           type: 'POST',
           data: {
             issueId : 0,
-            content : replaceTaskList(responseContent, checkboxes)
+            content : applyTaskListCheckedStatus(responseContent, checkboxes)
           },
           success: function(data) {
             $('.commit-commentContent-' + commentId).html(data.content);
@@ -349,7 +388,7 @@ $(function(){
           type: 'POST',
           data: {
             title   : $('#issueTitle').text(),
-            content : replaceTaskList(responseContent, checkboxes)
+            content : applyTaskListCheckedStatus(responseContent, checkboxes)
           }
         });
       }
@@ -367,7 +406,7 @@ $(function(){
           type: 'POST',
           data: {
             issueId : 0,
-            content : replaceTaskList(responseContent, checkboxes)
+            content : applyTaskListCheckedStatus(responseContent, checkboxes)
           }
         });
       }
@@ -378,3 +417,4 @@ $(function(){
 
 });
 </script>
+}

src/main/twirl/gitbucket/core/issues/editcomment.scala.html

@@ -12,6 +12,7 @@
   completionContext  = "issues",
   style              = "",
   elastic            = true,
+  focus              = true,
   tabIndex           = 1
 )
 <div class="pull-right">

src/main/twirl/gitbucket/core/issues/editissue.scala.html

@@ -11,6 +11,7 @@
   completionContext  = "issues",
   style              = "",
   elastic            = true,
+  focus              = true,
   tabIndex           = 1
 )
 <div class="pull-right">

src/main/twirl/gitbucket/core/issues/issueinfo.scala.html

@@ -139,7 +139,7 @@
 </div>
 <span id="label-assigned">
   @issue.flatMap(_.assignedUserName).map { userName =>
-    @helpers.avatar(userName, 20) @helpers.user(userName, styleClass="username strong small")
+    @helpers.avatarLink(userName, 20) @helpers.user(userName, styleClass="username strong small")
   }.getOrElse{
     <span class="muted small">No one</span>
   }

src/main/twirl/gitbucket/core/issues/list.scala.html

@@ -25,7 +25,7 @@
     <form method="GET" action="@helpers.url(repository)/search" id="search-filter-form" class="form-inline pull-right" autocomplete="off">
       <div class="input-group">
         <input type="text" class="form-control" name="q" placeholder="Search..."/>
-        <input type="hidden" name="type" value="issue"/>
+        <input type="hidden" name="type" value="@target"/>
         <span class="input-group-btn">
           <button type="submit" id="search-btn" class="btn btn-default"><i class="fa fa-search"></i></button>
         </span>

src/main/twirl/gitbucket/core/main.scala.html

@@ -4,9 +4,10 @@
 <!DOCTYPE html>
 <html>
   <head>
-    <meta charset="utf-8">
-    <title>@title</title>
+    <meta charset="UTF-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=0" />
     <meta http-equiv="X-UA-Compatible" content="IE=edge" />
+    <title>@title</title>
     <link rel="icon" href="@helpers.assets("/common/images/gitbucket.png")" type="image/vnd.microsoft.icon" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0">
     <link href="@helpers.assets("/vendors/google-fonts/css/source-sans-pro.css")" rel="stylesheet">
@@ -48,9 +49,10 @@
       <header class="main-header">
         <a href="@context.path/" class="logo">
           <span class="logo-mini"><img src="@helpers.assets("/common/images/gitbucket.svg")" alt="GitBucket" /></span>
-          <span class="logo-lg"><img src="@helpers.assets("/common/images/gitbucket.svg")" alt="GitBucket" />
-          <span class="header-title strong">GitBucket</span>
-          <span class="header-version">@gitbucket.core.GitBucketCoreModule.getVersions.last.getVersion</span></span>
+          <span class="logo-lg">
+            <img src="@helpers.assets("/common/images/gitbucket.svg")" alt="GitBucket" />
+            <span class="header-title strong">GitBucket</span>
+          </span>
         </a>
         <nav class="navbar navbar-static-top" role="navigation">
           <!-- Sidebar toggle button-->

src/main/twirl/gitbucket/core/menu.scala.html

@@ -53,9 +53,6 @@
           @menuitem(externalWikiUrl, "wiki", "Wiki", "book")
         }
       }
-      @if(repository.repository.options.allowFork) {
-        @menuitem("/network/members", "fork", "Forks", "repo-forked", repository.forkedCount)
-      }
       @if(context.loginAccount.isDefined && (context.loginAccount.get.isAdmin || repository.managers.contains(context.loginAccount.get.userName))){
         @menuitem("/settings", "settings", "Settings", "gear")
       }
@@ -78,6 +75,20 @@
             @gitbucket.core.plugin.PluginRegistry().getRepositoryHeaders.map { repositoryHeaderComponent =>
               @repositoryHeaderComponent(repository, context)
             }
+            @if(repository.repository.options.allowFork) {
+              @if(context.loginAccount.isEmpty){
+                <a class="btn btn-default btn-sm" href="@context.path/signin?redirect=@helpers.urlEncode(s"${context.path}/${repository.owner}/${repository.name}")">
+                  <span class="strong"><i class="octicon octicon-repo-forked"></i>Fork</span><span class="muted">: @repository.forkedCount</span>
+                </a>
+              } else {
+                <a class="btn btn-default btn-sm" href="@context.path/@repository.owner/@repository.name/fork" rel="facebox">
+                  <span class="strong"><i class="octicon octicon-repo-forked"></i>Fork</span><span class="muted">: @repository.forkedCount</span>
+                </a>
+              }
+            }
+            <form id="fork-form" method="post" action="@context.path/@repository.owner/@repository.name/fork" style="display: none;">
+              <input type="hidden" name="account" value="@context.loginAccount.map(_.userName)"/>
+            </form>
           </div>
           @gitbucket.core.helper.html.repositoryicon(repository, true)
           <a href="@helpers.url(repository.owner)">@repository.owner</a> / <a href="@helpers.url(repository)" class="strong">@repository.name</a>
@@ -95,4 +106,19 @@
     @body
   </div>
 </div>
+<script>
+$(function(){
+  $('a[rel*=facebox]').facebox({
+    'loadingImage': '@helpers.assets("/vendors/facebox/loading.gif")',
+    'closeImage': '@helpers.assets("/vendors/facebox/closelabel.png")'
+  });
+
+  $(document).on("click", ".js-fork-owner-select-target", function() {
+    var account = $(this).text().replace("@@", "");
+    $("#account").val(account);
+    $("#fork").submit();
+  });
+});
+</script>
+
 

src/main/twirl/gitbucket/core/pulls/commits.scala.html

@@ -1,42 +1,48 @@
-@(commits: Seq[Seq[gitbucket.core.util.JGitUtil.CommitInfo]],
-  comments: Option[List[gitbucket.core.model.Comment]] = None,
+@(issue: gitbucket.core.model.Issue,
+  pullreq: gitbucket.core.model.PullRequest,
+  commits: Seq[Seq[gitbucket.core.util.JGitUtil.CommitInfo]],
+  comments: Seq[gitbucket.core.model.Comment],
+  changedFileSize: Int,
+  isManageable: Boolean,
   repository: gitbucket.core.service.RepositoryService.RepositoryInfo)(implicit context: gitbucket.core.controller.Context)
 @import gitbucket.core.view.helpers
-<table class="table table-bordered">
-@commits.map { day =>
-  <tr>
-    <th rowspan="@day.size" width="100">@helpers.date(day.head.commitTime)</th>
-    @day.zipWithIndex.map { case (commit, i) =>
-      @if(i != 0){ <tr> }
-      <td>
-        <div class="pull-right text-right">
-          <a href="@helpers.url(repository)/commit/@commit.id" class="monospace commit-message strong"><i class="octicon octicon-diff" style="color: black;"></i>@commit.id.substring(0, 7)</a><br>
-          <a href="@helpers.url(repository)/tree/@commit.id" class="button-link">Browse files »</a>
-        </div>
-        <div>
-          <div class="commit-avatar-image">@helpers.avatarLink(commit, 40)</div>
+@gitbucket.core.pulls.html.menu("commits", issue, pullreq, commits.flatten, comments, changedFileSize, isManageable, repository){
+  <table class="table table-bordered">
+  @commits.map { day =>
+    <tr>
+      <th rowspan="@day.size" width="100">@helpers.date(day.head.commitTime)</th>
+      @day.zipWithIndex.map { case (commit, i) =>
+        @if(i != 0){ <tr> }
+        <td>
+          <div class="pull-right text-right">
+            <a href="@helpers.url(repository)/commit/@commit.id" class="monospace commit-message strong"><i class="octicon octicon-diff" style="color: black;"></i>@commit.id.substring(0, 7)</a><br>
+            <a href="@helpers.url(repository)/tree/@commit.id" class="button-link">Browse files »</a>
+          </div>
           <div>
-            <a href="@helpers.url(repository)/commit/@commit.id" class="commit-message strong">@helpers.link(commit.summary, repository)</a>
-            @if(commit.description.isDefined){
-              <a href="javascript:void(0)" onclick="$('#description-@commit.id').toggle();" class="omit">...</a>
-            }
-            <br>
-            @if(commit.description.isDefined){
-              <pre id="description-@commit.id" style="display: none;" class="commit-description">@helpers.link(commit.description.get, repository)</pre>
-            }
+            <div class="commit-avatar-image">@helpers.avatarLink(commit, 40)</div>
             <div>
-              @if(commit.isDifferentFromAuthor) {
-                @helpers.user(commit.authorName, commit.authorEmailAddress, "username")
-                <span class="muted">authored @gitbucket.core.helper.html.datetimeago(commit.authorTime)</span>
-                <span class="octicon octicon-arrow-right" style="margin-top : -2px;"></span>
+              <a href="@helpers.url(repository)/commit/@commit.id" class="commit-message strong">@helpers.link(commit.summary, repository)</a>
+              @if(commit.description.isDefined){
+                <a href="javascript:void(0)" onclick="$('#description-@commit.id').toggle();" class="omit">...</a>
               }
-              @helpers.user(commit.committerName, commit.committerEmailAddress, "username")
-              <span class="muted">committed @gitbucket.core.helper.html.datetimeago(commit.commitTime)</span>
+              <br>
+              @if(commit.description.isDefined){
+                <pre id="description-@commit.id" style="display: none;" class="commit-description">@helpers.link(commit.description.get, repository)</pre>
+              }
+              <div>
+                @if(commit.isDifferentFromAuthor) {
+                  @helpers.user(commit.authorName, commit.authorEmailAddress, "username")
+                  <span class="muted">authored @gitbucket.core.helper.html.datetimeago(commit.authorTime)</span>
+                  <span class="octicon octicon-arrow-right" style="margin-top : -2px;"></span>
+                }
+                @helpers.user(commit.committerName, commit.committerEmailAddress, "username")
+                <span class="muted">committed @gitbucket.core.helper.html.datetimeago(commit.commitTime)</span>
+              </div>
             </div>
           </div>
-        </div>
-      </td>
-      </tr>
-    }
+        </td>
+        </tr>
+      }
+  }
+  </table>
 }
-</table>

src/main/twirl/gitbucket/core/pulls/compare.scala.html

@@ -1,7 +1,7 @@
 @(title: String,
   commits: Seq[Seq[gitbucket.core.util.JGitUtil.CommitInfo]],
   diffs: Seq[gitbucket.core.util.JGitUtil.DiffInfo],
-  members: List[(String, String)],
+  members: List[(String, String, String)],
   comments: List[gitbucket.core.model.Comment],
   originId: String,
   forkedId: String,
@@ -22,8 +22,8 @@
     <div class="pullreq-info">
       <div id="compare-edit">
         @gitbucket.core.helper.html.dropdown(originRepository.owner + "/" + originRepository.name, "base fork", filter=("origin_repo", "Find Repository...")) {
-          @members.map { case (owner, name) =>
-            <li><a href="#" class="origin-owner" data-owner="@owner" data-name="@name">@gitbucket.core.helper.html.checkicon(owner == originRepository.owner) @owner/@name</a></li>
+          @members.map { case (owner, name, defaultBranch) =>
+            <li><a href="#" class="origin-owner" data-owner="@owner" data-name="@name" data-default-branch="@defaultBranch">@gitbucket.core.helper.html.checkicon(owner == originRepository.owner) @owner/@name</a></li>
           }
         }
         @gitbucket.core.helper.html.dropdown(originId, "base", filter=("origin_branch", "Find Branch...")) {
@@ -33,8 +33,8 @@
         }
         ...
         @gitbucket.core.helper.html.dropdown(forkedRepository.owner + "/" + forkedRepository.name, "head fork", filter=("forked_repo", "Find Repository...")) {
-          @members.map { case (owner, name) =>
-            <li><a href="#" class="forked-owner" data-owner="@owner" data-name="@name">@gitbucket.core.helper.html.checkicon(owner == forkedRepository.owner) @owner/@name</a></li>
+          @members.map { case (owner, name, defaultBranch) =>
+            <li><a href="#" class="forked-owner" data-owner="@owner" data-name="@name" data-default-branch="@defaultBranch">@gitbucket.core.helper.html.checkicon(owner == forkedRepository.owner) @owner/@name</a></li>
           }
         }
         @gitbucket.core.helper.html.dropdown(forkedId, "compare", filter=("forked_branch", "Find Branch...")) {
@@ -142,7 +142,7 @@
             <tr>
               <td style="width: 20%;">
                 <i class="octicon octicon-git-commit"></i>
-                @helpers.avatar(commit, 20)
+                @helpers.avatarLink(commit, 20)
                 @helpers.user(commit.authorName, commit.authorEmailAddress, "username strong")
               </td>
               <td><span class="monospace">@commit.shortMessage</span></td>
@@ -170,25 +170,46 @@
 }
 <script>
 $(function(){
-  $('a.origin-owner, a.forked-owner, a.origin-branch, a.forked-branch').click(function(){
-    var e = $(this);
+  function updateSelector(e){
     e.parents('ul').find('i').attr('class', 'octicon');
     e.find('i').addClass('octicon-check');
     e.parents('div.btn-group').find('button span.strong').text(e.text());
+  }
 
-    @if(members.isEmpty){
-      location.href = '@helpers.url(repository)/compare/' +
-        $.trim($('i.octicon-check').parents('a.origin-branch').data('branch')) + '...' +
-        $.trim($('i.octicon-check').parents('a.forked-branch').data('branch'));
-    } else {
-      location.href = '@context.path/' +
-        $.trim($('i.octicon-check').parents('a.forked-owner' ).data('owner')) + '/' +
-        $.trim($('i.octicon-check').parents('a.forked-owner' ).data('name')) +'/compare/' +
-        $.trim($('i.octicon-check').parents('a.origin-owner' ).data('owner')) + ':' +
-        $.trim($('i.octicon-check').parents('a.origin-branch').data('branch')) + '...' +
-        $.trim($('i.octicon-check').parents('a.forked-owner' ).data('owner')) + ':' +
-        $.trim($('i.octicon-check').parents('a.forked-branch').data('branch'));
-    }
+  $('a.origin-owner').click(function(){
+    updateSelector($(this));
+
+    location.href = '@context.path/' +
+      $.trim($('i.octicon-check').parents('a.forked-owner' ).data('owner')) + '/' +
+      $.trim($('i.octicon-check').parents('a.forked-owner' ).data('name')) +'/compare/' +
+      $.trim($('i.octicon-check').parents('a.origin-owner' ).data('owner')) + ':' +
+      $.trim($('i.octicon-check').parents('a.origin-owner' ).data('default-branch')) + '...' +
+      $.trim($('i.octicon-check').parents('a.forked-owner' ).data('owner')) + ':' +
+      $.trim($('i.octicon-check').parents('a.forked-branch').data('branch'));
+  });
+
+  $('a.forked-owner').click(function(){
+    updateSelector($(this));
+
+    location.href = '@context.path/' +
+      $.trim($('i.octicon-check').parents('a.forked-owner' ).data('owner')) + '/' +
+      $.trim($('i.octicon-check').parents('a.forked-owner' ).data('name')) +'/compare/' +
+      $.trim($('i.octicon-check').parents('a.origin-owner' ).data('owner')) + ':' +
+      $.trim($('i.octicon-check').parents('a.origin-branch').data('branch')) + '...' +
+      $.trim($('i.octicon-check').parents('a.forked-owner' ).data('owner')) + ':' +
+      $.trim($('i.octicon-check').parents('a.forked-owner' ).data('default-branch'));
+  });
+
+  $('a.origin-branch, a.forked-branch').click(function(){
+    updateSelector($(this));
+
+    location.href = '@context.path/' +
+      $.trim($('i.octicon-check').parents('a.forked-owner' ).data('owner')) + '/' +
+      $.trim($('i.octicon-check').parents('a.forked-owner' ).data('name')) +'/compare/' +
+      $.trim($('i.octicon-check').parents('a.origin-owner' ).data('owner')) + ':' +
+      $.trim($('i.octicon-check').parents('a.origin-branch').data('branch')) + '...' +
+      $.trim($('i.octicon-check').parents('a.forked-owner' ).data('owner')) + ':' +
+      $.trim($('i.octicon-check').parents('a.forked-branch').data('branch'));
   });
 
   $('#show-form').click(function(){
@@ -206,19 +227,12 @@ $(function(){
         function(data){ $('.check-conflict').html(data); });
     }
 
-    @if(members.isEmpty){
-      checkConflict(
-        $.trim($('i.octicon-check').parents('a.origin-branch').data('branch')),
-        $.trim($('i.octicon-check').parents('a.forked-branch').data('branch'))
-      );
-    } else {
-      checkConflict(
-        $.trim($('i.octicon-check').parents('a.origin-owner' ).data('owner')) + ":" +
-        $.trim($('i.octicon-check').parents('a.origin-branch').data('branch')),
-        $.trim($('i.octicon-check').parents('a.forked-owner' ).data('owner')) + ":" +
-        $.trim($('i.octicon-check').parents('a.forked-branch').data('branch'))
-      );
-    }
+    checkConflict(
+      $.trim($('i.octicon-check').parents('a.origin-owner' ).data('owner')) + ":" +
+      $.trim($('i.octicon-check').parents('a.origin-branch').data('branch')),
+      $.trim($('i.octicon-check').parents('a.forked-owner' ).data('owner')) + ":" +
+      $.trim($('i.octicon-check').parents('a.forked-branch').data('branch'))
+    );
   }
 });
 </script>