Moving to Quill

# Conflicts:
#	build.sbt
#	src/main/scala/gitbucket/core/controller/AccountController.scala
#	src/main/scala/gitbucket/core/controller/UserManagementController.scala

.github/CONTRIBUTING.md

@@ -0,0 +1,7 @@
+# Guideline for Issues
+
+- At first, See [FAQ](https://github.com/gitbucket/gitbucket/wiki/FAQ) and check issues whether there is a same question or request in the past.
+- If you can't find same question and report, send it to [gitter room](https://gitter.im/gitbucket/gitbucket) before raising an issue.
+- We can also support in Japaneses other than English at [gitter room for Japanese](https://gitter.im/gitbucket/gitbucket_ja).
+- Write an issue in English. At least, write subject in English.
+- First priority of GitBucket is easy installation and reproduce GitHub behavior, so we might reject if your request is against it.

.github/ISSUE_TEMPLATE.md

@@ -0,0 +1,19 @@
+### Before submitting an issue to Gitbucket I have first:
+
+- [] read the [contribution guidelines](https://github.com/gitbucket/gitbucket/blob/master/.github/CONTRIBUTING.md)
+- [] searched for similar already existing issue
+- [] read the documentation and [wiki](https://github.com/gitbucket/gitbucket/wiki) 
+
+*(if you have performed all the above, remove the paragraph and continue describing the issue with template below)*
+
+## Issue
+**Impacted version**: xxxx
+
+**Deployment mode**: *explain here how you use gitbucket : standalone app, under webcontainer (which one), with an http frontend (nginx, httpd, ...)*
+
+**Problem description**:
+- *be as explicit has you can*
+- *describe the problem and its symptoms*
+- *explain how to reproduce*
+- *attach whatever information that can help understanding the context (screen capture, log files)*
+- *do your best to use a correct english (re-read yourself)*

.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,8 @@
+### Before submitting a pull-request to Gitbucket I have first:
+
+- [] read the [contribution guidelines](https://github.com/gitbucket/gitbucket/blob/master/.github/CONTRIBUTING.md)
+- [] rebased my branch over master
+- [] verified that project is compiling
+- [] verified that tests are passing
+- [] squashed my commits as appropriate *(keep several commits if it is relevant to understand the PR)*
+- [] [marked as closed](https://help.github.com/articles/closing-issues-via-commit-messages/) all issue ID that this PR should correct

CONTRIBUTING.md

@@ -1,7 +0,0 @@
-# Guideline for Issues
-
-- If you have any question about GitBucket, send it to [gitter room](https://gitter.im/gitbucket/gitbucket) before raise an issue.
-- Make sure check whether there is a same question or request in the past.
-- When raise a new issue, write subject in **English** at least.
-- We can also support in Japaneses other than English at [gitter room for Japanese](https://gitter.im/gitbucket/gitbucket_ja).
-- First priority of GitBucket is easy installation and reproduce GitHub behavior, so we might reject if your request is against it.

README.md

@@ -60,6 +60,13 @@ Support
 
 Release Notes
 --------
+### 3.12 - 27 Feb 2016
+- New GitHub UI
+- Improve mobile view
+- Improve printing style
+- Individual URL for pull request tabs
+- SSH host configuration is separated from HTTP base URL
+
 ### 3.11 - 30 Jan 2016
 - Upgrade Scalatra to 2.4
 - Sidebar and Footer for Wiki
@@ -67,6 +74,7 @@ Release Notes
 - Limit recent updated repositories list
 - Issue actions look-alike GitHub
 - Web API for labels
+- Requires Java 8
 
 ### 3.10 - 30 Dec 2015
 - Move to Bootstrap3

build.sbt

@@ -1,6 +1,6 @@
 val Organization = "gitbucket"
 val Name = "gitbucket"
-val GitBucketVersion = "3.11.0"
+val GitBucketVersion = "3.12.0"
 val ScalatraVersion = "2.4.0"
 val JettyVersion = "9.3.6.v20151106"
 
@@ -10,13 +10,12 @@ sourcesInBase := false
 organization := Organization
 name := Name
 version := GitBucketVersion
-scalaVersion := "2.11.6"
+scalaVersion := "2.11.7"
 
 // dependency settings
 resolvers ++= Seq(
   Classpaths.typesafeReleases,
-  "amateras-repo" at "http://amateras.sourceforge.jp/mvn/",
-  "amateras-snapshot-repo" at "http://amateras.sourceforge.jp/mvn-snapshot/"
+  "sonatype-snapshot" at "https://oss.sonatype.org/content/repositories/snapshots/"
 )
 libraryDependencies ++= Seq(
   "org.eclipse.jgit"          % "org.eclipse.jgit.http.server" % "4.1.1.201511131810-r",
@@ -26,7 +25,7 @@ libraryDependencies ++= Seq(
   "org.json4s"               %% "json4s-jackson"               % "3.3.0",
   "io.github.gitbucket"      %% "scalatra-forms"               % "1.0.0",
   "commons-io"                % "commons-io"                   % "2.4",
-  "io.github.gitbucket"       % "markedj"                      % "1.0.6",
+  "io.github.gitbucket"       % "markedj"                      % "1.0.7",
   "org.apache.commons"        % "commons-compress"             % "1.10",
   "org.apache.commons"        % "commons-email"                % "1.4",
   "org.apache.httpcomponents" % "httpclient"                   % "4.5.1",
@@ -39,12 +38,14 @@ libraryDependencies ++= Seq(
   "com.mchange"               % "c3p0"                         % "0.9.5.2",
   "com.typesafe"              % "config"                       % "1.3.0",
   "com.typesafe.akka"        %% "akka-actor"                   % "2.3.14",
+  "io.getquill"              %% "quill-jdbc"                   % "0.4.1",
+  "fr.brouillard.oss.security.xhub" % "xhub4j-core"            % "1.0.0",
   "com.enragedginger"        %% "akka-quartz-scheduler"        % "1.4.0-akka-2.3.x" exclude("c3p0","c3p0"),
   "org.eclipse.jetty"         % "jetty-webapp"                 % JettyVersion     % "provided",
   "javax.servlet"             % "javax.servlet-api"            % "3.1.0"          % "provided",
   "junit"                     % "junit"                        % "4.12"           % "test",
-  "org.scalatra"             %% "scalatra-specs2"              % ScalatraVersion  % "test",
-  "org.specs2"               %% "specs2-junit"                 % "3.6.6"          % "test"
+  "org.scalatra"             %% "scalatra-scalatest"           % ScalatraVersion  % "test",
+  "org.scalaz"               %% "scalaz-core"                  % "7.2.0"          % "test"
 )
 
 // Twirl settings
@@ -52,7 +53,7 @@ play.twirl.sbt.Import.TwirlKeys.templateImports += "gitbucket.core._"
 
 // Compiler settings
 scalacOptions := Seq("-deprecation", "-language:postfixOps")
-javacOptions in compile ++= Seq("-target", "7", "-source", "7")
+javacOptions in compile ++= Seq("-target", "8", "-source", "8")
 javaOptions in Jetty += "-Dlogback.configurationFile=/logback-dev.xml"
 testOptions in Test += Tests.Argument(TestFrameworks.Specs2, "junitxml", "console")
 javaOptions in Test += "-Dgitbucket.home=target/gitbucket_home_for_test"
@@ -82,36 +83,36 @@ jrebelSettings
 // Create executable war file
 val executableConfig = config("executable").hide
 Keys.ivyConfigurations += executableConfig
-libraryDependencies	++= Seq(
-  "org.eclipse.jetty"	%	"jetty-security"     % JettyVersion % "executable",
-  "org.eclipse.jetty"	%	"jetty-webapp"       % JettyVersion % "executable",
-  "org.eclipse.jetty"	%	"jetty-continuation" % JettyVersion % "executable",
-  "org.eclipse.jetty"	%	"jetty-server"       % JettyVersion % "executable",
-  "org.eclipse.jetty"	%	"jetty-xml"          % JettyVersion % "executable",
-  "org.eclipse.jetty"	%	"jetty-http"         % JettyVersion % "executable",
-  "org.eclipse.jetty"	%	"jetty-servlet"      % JettyVersion % "executable",
-  "org.eclipse.jetty"	%	"jetty-io"           % JettyVersion % "executable",
-  "org.eclipse.jetty"	%	"jetty-util"         % JettyVersion % "executable"
+libraryDependencies ++= Seq(
+  "org.eclipse.jetty" % "jetty-security"     % JettyVersion % "executable",
+  "org.eclipse.jetty" % "jetty-webapp"       % JettyVersion % "executable",
+  "org.eclipse.jetty" % "jetty-continuation" % JettyVersion % "executable",
+  "org.eclipse.jetty" % "jetty-server"       % JettyVersion % "executable",
+  "org.eclipse.jetty" % "jetty-xml"          % JettyVersion % "executable",
+  "org.eclipse.jetty" % "jetty-http"         % JettyVersion % "executable",
+  "org.eclipse.jetty" % "jetty-servlet"      % JettyVersion % "executable",
+  "org.eclipse.jetty" % "jetty-io"           % JettyVersion % "executable",
+  "org.eclipse.jetty" % "jetty-util"         % JettyVersion % "executable"
 )
 
-val executableKey	= TaskKey[File]("executable")
-executableKey	:= {
+val executableKey = TaskKey[File]("executable")
+executableKey := {
   import org.apache.ivy.util.ChecksumHelper
   import java.util.jar.{ Manifest => JarManifest }
   import java.util.jar.Attributes.{ Name => AttrName }
 
-  val workDir	= Keys.target.value / "executable"
-  val warName	= Keys.name.value + ".war"
+  val workDir   = Keys.target.value / "executable"
+  val warName   = Keys.name.value + ".war"
 
-  val log		= streams.value.log
+  val log       = streams.value.log
   log info s"building executable webapp in ${workDir}"
 
   // initialize temp directory
-  val temp	= workDir / "webapp"
+  val temp  = workDir / "webapp"
   IO delete temp
 
   // include jetty classes
-  val jettyJars	= Keys.update.value select configurationFilter(name = executableConfig.name)
+  val jettyJars = Keys.update.value select configurationFilter(name = executableConfig.name)
   jettyJars foreach { jar =>
     IO unzip (jar, temp, (name:String) =>
       (name startsWith "javax/") ||
@@ -120,31 +121,34 @@ executableKey	:= {
   }
 
   // include original war file
-  val warFile	= (Keys.`package`).value
+  val warFile   = (Keys.`package`).value
   IO unzip (warFile, temp)
 
   // include launcher classes
-  val classDir		= (Keys.classDirectory in Compile).value
-  val launchClasses	= Seq("JettyLauncher.class" /*, "HttpsSupportConnector.class" */)
+  val classDir      = (Keys.classDirectory in Compile).value
+  val launchClasses = Seq("JettyLauncher.class" /*, "HttpsSupportConnector.class" */)
   launchClasses foreach { name =>
     IO copyFile (classDir / name, temp / name)
   }
 
   // zip it up
   IO delete (temp / "META-INF" / "MANIFEST.MF")
-  val contentMappings	= (temp.*** --- PathFinder(temp)).get pair relativeTo(temp)
-  val manifest		= new JarManifest
-  manifest.getMainAttributes put (AttrName.MANIFEST_VERSION,	"1.0")
-  manifest.getMainAttributes put (AttrName.MAIN_CLASS,		"JettyLauncher")
-  val outputFile		= workDir / warName
+  val contentMappings   = (temp.*** --- PathFinder(temp)).get pair relativeTo(temp)
+  val manifest          = new JarManifest
+  manifest.getMainAttributes put (AttrName.MANIFEST_VERSION,    "1.0")
+  manifest.getMainAttributes put (AttrName.MAIN_CLASS,          "JettyLauncher")
+  val outputFile    = workDir / warName
   IO jar (contentMappings, outputFile, manifest)
 
   // generate checksums
-  Seq("md5", "sha1") foreach { algorithm =>
-    IO.write(
-      workDir / (warName + "." + algorithm),
-      ChecksumHelper computeAsString (outputFile, algorithm)
-    )
+  Seq(
+    "md5"    -> "MD5",
+    "sha1"   -> "SHA-1",
+    "sha256" -> "SHA-256"
+  )
+  .foreach { case (extension, algorithm) =>
+    val checksumFile = workDir / (warName + "." + extension)
+    Checksums generate (outputFile, checksumFile, algorithm)
   }
 
   // done
@@ -153,7 +157,7 @@ executableKey	:= {
 }
 /*
 Keys.artifact in (Compile, executableKey) ~= {
-	_ copy (`type` = "war", extension = "war"))
+    _ copy (`type` = "war", extension = "war"))
 }
 addArtifact(Keys.artifact in (Compile, executableKey), executableKey)
 */

doc/how_to_run.md

@@ -32,3 +32,11 @@ $ sbt executable
 ```
 
 at the top of the source tree. It generates executable `gitbucket.war` into `target/executable`. We release this war file as release artifact.
+
+Run tests spec
+---------
+To run the full serie of tests, run the following command:
+
+```
+sbt test
+```

doc/release.md

@@ -6,15 +6,14 @@ Update version number
 
 Note to update version number in files below:
 
-### project/build.scala
+### build.sbt
 
 ```scala
-object MyBuild extends Build {
-  val Organization = "gitbucket"
-  val Name = "gitbucket"
-  val Version = "3.3.0" // <---- update version!!
-  val ScalaVersion = "2.11.6"
-  val ScalatraVersion = "2.3.1"
+val Organization = "gitbucket"
+val Name = "gitbucket"
+val GitBucketVersion = "3.12.0" // <---- update version!!
+val ScalatraVersion = "2.4.0"
+val JettyVersion = "9.3.6.v20151106"
 ```
 
 ### src/main/scala/gitbucket/core/servlet/AutoUpdate.scala
@@ -26,8 +25,8 @@ object AutoUpdate {
    * The history of versions. A head of this sequence is the current GitBucket version.
    */
   val versions = Seq(
-    new Version(3, 3), // <---- add this line!!
-    new Version(3, 2),
+    new Version(3, 12), // <---- add this line!!
+    new Version(3, 11),
 ```
 
 Generate release files

project/Checksums.scala

@@ -0,0 +1,34 @@
+import java.security.MessageDigest;
+import scala.annotation._
+import sbt._
+import sbt.Using._
+
+object Checksums {
+  private val bufferSize = 2048
+
+  def generate(source:File, target:File, algorithm:String):Unit =
+      IO write (target, compute(source, algorithm))
+
+  def compute(file:File, algorithm:String):String =
+      hex(raw(file, algorithm))
+
+  def raw(file:File, algorithm:String):Array[Byte]    =
+      (Using fileInputStream file) { is =>
+        val md  = MessageDigest getInstance algorithm
+        val buf = new Array[Byte](bufferSize)
+        md.reset()
+        @tailrec
+        def loop() {
+          val len = is read buf
+          if (len != -1) {
+            md update (buf, 0, len)
+            loop()
+          }
+        }
+        loop()
+        md.digest()
+      }
+
+  def hex(bytes:Array[Byte]):String =
+      bytes map { it => "%02x" format (it.toInt & 0xff) } mkString ""
+}

project/build.properties

@@ -1 +1 @@
-sbt.version=0.13.8
+sbt.version=0.13.9

release/env.sh

@@ -1,3 +1,3 @@
 #!/bin/sh
-export GITBUCKET_VERSION=`cat ../project/build.scala | grep 'val Version' | cut -d \" -f 2`
+export GITBUCKET_VERSION=`cat ../build.sbt | grep 'val GitBucketVersion' | cut -d \" -f 2`
 echo "GITBUCKET_VERSION: $GITBUCKET_VERSION"

sbt.bat

@@ -1,2 +1,2 @@
 set SCRIPT_DIR=%~dp0
-java %JAVA_OPTS% -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -XX:MaxPermSize=256m -Xmx512M -Xss2M -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005 -jar "%SCRIPT_DIR%\sbt-launch-0.13.8.jar" %*
+java %JAVA_OPTS% -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -XX:MaxPermSize=256m -Xmx512M -Xss2M -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005 -jar "%SCRIPT_DIR%\sbt-launch-0.13.9.jar" %*

sbt.sh

@@ -1,2 +1,2 @@
 #!/bin/sh
-java $JAVA_OPTS -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -XX:MaxPermSize=256m -Xmx512M -Xss2M -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005 -jar `dirname $0`/sbt-launch-0.13.8.jar "$@"
+java $JAVA_OPTS -Dsbt.log.noformat=true -XX:+CMSClassUnloadingEnabled -XX:MaxPermSize=256m -Xmx512M -Xss2M -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=5005 -jar `dirname $0`/sbt-launch-0.13.9.jar "$@"

src/main/resources/application.conf

@@ -0,0 +1,8 @@
+db.dataSourceClassName="org.h2.jdbcx.JdbcDataSource"
+db.dataSource.url="jdbc:h2:~/.gitbucket/data;MVCC=true"
+db.dataSource.user="sa"
+db.dataSource.password="sa"
+#db.dataSource.cachePrepStmts=true
+#db.dataSource.prepStmtCacheSize=250
+#db.dataSource.prepStmtCacheSqlLimit=2048
+#db.connectionTimeout=30000

src/main/resources/update/3_13.sql

@@ -0,0 +1 @@
+ALTER TABLE WEB_HOOK ADD COLUMN TOKEN VARCHAR(100);

src/main/scala/ScalatraBootstrap.scala

@@ -27,12 +27,10 @@ class ScalatraBootstrap extends LifeCycle {
     }
 
     context.mount(new IndexController, "/")
-    context.mount(new SearchController, "/")
+    context.mount(new ApiController, "/api/v3")
     context.mount(new FileUploadController, "/upload")
+    context.mount(new SystemSettingsController, "/admin")
     context.mount(new DashboardController, "/*")
-    context.mount(new UserManagementController, "/*")
-    context.mount(new SystemSettingsController, "/*")
-    context.mount(new PluginsController, "/*")
     context.mount(new AccountController, "/*")
     context.mount(new RepositoryViewerController, "/*")
     context.mount(new WikiController, "/*")

src/main/scala/gitbucket/core/api/ApiRepository.scala

@@ -39,7 +39,7 @@ object ApiRepository{
       description = repository.description.getOrElse(""),
       watchers    = 0,
       forks       = forkedCount,
-      `private`   = repository.isPrivate,
+      `private`   = repository.`private`,
       default_branch = repository.defaultBranch,
       owner       = owner
     )(urlIsHtmlUrl)

src/main/scala/gitbucket/core/api/ApiUser.scala

@@ -29,8 +29,8 @@ object ApiUser{
   def apply(user: Account): ApiUser = ApiUser(
     login      = user.userName,
     email      = user.mailAddress,
-    `type`     = if(user.isGroupAccount){ "Organization" }else{ "User" },
-    site_admin = user.isAdmin,
+    `type`     = if(user.groupAccount){ "Organization" }else{ "User" },
+    site_admin = user.administrator,
     created_at = user.registeredDate
   )
 }

src/main/scala/gitbucket/core/controller/AccountController.scala

@@ -1,7 +1,6 @@
 package gitbucket.core.controller
 
 import gitbucket.core.account.html
-import gitbucket.core.api._
 import gitbucket.core.helper
 import gitbucket.core.model.GroupMember
 import gitbucket.core.service._
@@ -14,22 +13,19 @@ import gitbucket.core.util._
 
 import io.github.gitbucket.scalatra.forms._
 import org.apache.commons.io.FileUtils
-import org.eclipse.jgit.api.Git
-import org.eclipse.jgit.dircache.DirCache
-import org.eclipse.jgit.lib.{FileMode, Constants}
 import org.scalatra.i18n.Messages
 
 
 class AccountController extends AccountControllerBase
   with AccountService with RepositoryService with ActivityService with WikiService with LabelsService with SshKeyService
   with OneselfAuthenticator with UsersAuthenticator with GroupManagerAuthenticator with ReadableUsersAuthenticator
-  with AccessTokenService with WebHookService
+  with AccessTokenService with WebHookService with RepositoryCreationService
 
 
 trait AccountControllerBase extends AccountManagementControllerBase {
   self: AccountService with RepositoryService with ActivityService with WikiService with LabelsService with SshKeyService
     with OneselfAuthenticator with UsersAuthenticator with GroupManagerAuthenticator with ReadableUsersAuthenticator
-    with AccessTokenService with WebHookService =>
+    with AccessTokenService with WebHookService with RepositoryCreationService =>
 
   case class AccountNewForm(userName: String, password: String, fullName: String, mailAddress: String,
                             url: Option[String], fileId: Option[String])
@@ -118,23 +114,23 @@ trait AccountControllerBase extends AccountManagementControllerBase {
         // Public Activity
         case "activity" =>
           gitbucket.core.account.html.activity(account,
-            if(account.isGroupAccount) Nil else getGroupsByUserName(userName),
+            if(account.groupAccount) Nil else getGroupsByUserName(userName),
             getActivitiesByUser(userName, true))
 
         // Members
-        case "members" if(account.isGroupAccount) => {
+        case "members" if(account.groupAccount) => {
           val members = getGroupMembers(account.userName)
           gitbucket.core.account.html.members(account, members.map(_.userName),
-            context.loginAccount.exists(x => members.exists { member => member.userName == x.userName && member.isManager }))
+            context.loginAccount.exists(x => members.exists { member => member.userName == x.userName && member.manager }))
         }
 
         // Repositories
         case _ => {
           val members = getGroupMembers(account.userName)
           gitbucket.core.account.html.repositories(account,
-            if(account.isGroupAccount) Nil else getGroupsByUserName(userName),
-            getVisibleRepositories(context.loginAccount, context.baseUrl, Some(userName)),
-            context.loginAccount.exists(x => members.exists { member => member.userName == x.userName && member.isManager }))
+            if(account.groupAccount) Nil else getGroupsByUserName(userName),
+            getVisibleRepositories(context.loginAccount, Some(userName)),
+            context.loginAccount.exists(x => members.exists { member => member.userName == x.userName && member.manager }))
         }
       }
     } getOrElse NotFound
@@ -156,25 +152,6 @@ trait AccountControllerBase extends AccountManagementControllerBase {
     }
   }
 
-  /**
-   * https://developer.github.com/v3/users/#get-a-single-user
-   */
-  get("/api/v3/users/:userName") {
-    getAccountByUserName(params("userName")).map { account =>
-      JsonFormat(ApiUser(account))
-    } getOrElse NotFound
-  }
-
-  /**
-   * https://developer.github.com/v3/users/#get-the-authenticated-user
-   */
-  get("/api/v3/user") {
-    context.loginAccount.map { account =>
-      JsonFormat(ApiUser(account))
-    } getOrElse Unauthorized
-  }
-
-
   get("/:userName/_edit")(oneselfOnly {
     val userName = params("userName")
     getAccountByUserName(userName).map { x =>
@@ -213,7 +190,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
 //      removeUserRelatedData(userName)
 
       removeUserRelatedData(userName)
-      updateAccount(account.copy(isRemoved = true))
+      updateAccount(account.copy(removed = true))
     }
 
     session.invalidate
@@ -366,8 +343,8 @@ trait AccountControllerBase extends AccountManagementControllerBase {
    */
   post("/new", newRepositoryForm)(usersOnly { form =>
     LockUtil.lock(s"${form.owner}/${form.name}"){
-      if(getRepository(form.owner, form.name, context.baseUrl).isEmpty){
-        createRepository(form.owner, form.name, form.description, form.isPrivate, form.createReadme)
+      if(getRepository(form.owner, form.name).isEmpty){
+        createRepository(context.loginAccount.get, form.owner, form.name, form.description, form.isPrivate, form.createReadme)
       }
 
       // redirect to the repository
@@ -375,54 +352,6 @@ trait AccountControllerBase extends AccountManagementControllerBase {
     }
   })
 
-  /**
-   * Create user repository
-   * https://developer.github.com/v3/repos/#create
-   */
-  post("/api/v3/user/repos")(usersOnly {
-    val owner = context.loginAccount.get.userName
-    (for {
-      data <- extractFromJsonBody[CreateARepository] if data.isValid
-    } yield {
-      LockUtil.lock(s"${owner}/${data.name}") {
-        if(getRepository(owner, data.name, context.baseUrl).isEmpty){
-          createRepository(owner, data.name, data.description, data.`private`, data.auto_init)
-          val repository = getRepository(owner, data.name, context.baseUrl).get
-          JsonFormat(ApiRepository(repository, ApiUser(getAccountByUserName(owner).get)))
-        } else {
-          ApiError(
-            "A repository with this name already exists on this account", 
-            Some("https://developer.github.com/v3/repos/#create")
-          )
-        }
-      }
-    }) getOrElse NotFound
-  })
-
-  /**
-   * Create group repository
-   * https://developer.github.com/v3/repos/#create
-   */
-  post("/api/v3/orgs/:org/repos")(managersOnly {
-    val groupName = params("org")
-    (for {
-      data <- extractFromJsonBody[CreateARepository] if data.isValid
-    } yield {
-      LockUtil.lock(s"${groupName}/${data.name}") {
-        if(getRepository(groupName, data.name, context.baseUrl).isEmpty){
-          createRepository(groupName, data.name, data.description, data.`private`, data.auto_init)
-          val repository = getRepository(groupName, data.name, context.baseUrl).get
-          JsonFormat(ApiRepository(repository, ApiUser(getAccountByUserName(groupName).get)))
-        } else {
-          ApiError(
-            "A repository with this name already exists for this group", 
-            Some("https://developer.github.com/v3/repos/#create")
-          )
-        }
-      }
-    }) getOrElse NotFound
-  })
-
   get("/:owner/:repository/fork")(readableUsersOnly { repository =>
     val loginAccount   = context.loginAccount.get
     val loginUserName  = loginAccount.userName
@@ -431,7 +360,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
       case _: List[String] =>
         val managerPermissions = groups.map { group =>
           val members = getGroupMembers(group)
-          context.loginAccount.exists(x => members.exists { member => member.userName == x.userName && member.isManager })
+          context.loginAccount.exists(x => members.exists { member => member.userName == x.userName && member.manager })
         }
         helper.html.forkrepository(
           repository,
@@ -447,7 +376,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
     val accountName   = form.accountName
 
     LockUtil.lock(s"${accountName}/${repository.name}"){
-      if(getRepository(accountName, repository.name, baseUrl).isDefined ||
+      if(getRepository(accountName, repository.name).isDefined ||
           (accountName != loginUserName && !getGroupsByUserName(loginUserName).contains(accountName))){
         // redirect to the repository if repository already exists
         redirect(s"/${accountName}/${repository.name}")
@@ -456,11 +385,11 @@ trait AccountControllerBase extends AccountManagementControllerBase {
         val originUserName = repository.repository.originUserName.getOrElse(repository.owner)
         val originRepositoryName = repository.repository.originRepositoryName.getOrElse(repository.name)
 
-        createRepository(
+        insertRepository(
           repositoryName       = repository.name,
           userName             = accountName,
           description          = repository.repository.description,
-          isPrivate            = repository.repository.isPrivate,
+          isPrivate            = repository.repository.`private`,
           originRepositoryName = Some(originRepositoryName),
           originUserName       = Some(originUserName),
           parentRepositoryName = Some(repository.name),
@@ -469,7 +398,7 @@ trait AccountControllerBase extends AccountManagementControllerBase {
 
         // Add collaborators for group repository
         val ownerAccount = getAccountByUserName(accountName).get
-        if(ownerAccount.isGroupAccount){
+        if(ownerAccount.groupAccount){
           getGroupMembers(accountName).foreach { member =>
             addCollaborator(accountName, repository.name, member.userName)
           }
@@ -496,68 +425,6 @@ trait AccountControllerBase extends AccountManagementControllerBase {
     }
   })
 
-  private def createRepository(owner: String, name: String, description: Option[String], isPrivate: Boolean, createReadme: Boolean) {
-    val ownerAccount  = getAccountByUserName(owner).get
-    val loginAccount  = context.loginAccount.get
-    val loginUserName = loginAccount.userName
-
-    // Insert to the database at first
-    createRepository(name, owner, description, isPrivate)
-
-    // Add collaborators for group repository
-    if(ownerAccount.isGroupAccount){
-      getGroupMembers(owner).foreach { member =>
-        addCollaborator(owner, name, member.userName)
-      }
-    }
-
-    // Insert default labels
-    insertDefaultLabels(owner, name)
-
-    // Create the actual repository
-    val gitdir = getRepositoryDir(owner, name)
-    JGitUtil.initRepository(gitdir)
-
-    if(createReadme){
-      using(Git.open(gitdir)){ git =>
-        val builder  = DirCache.newInCore.builder()
-        val inserter = git.getRepository.newObjectInserter()
-        val headId   = git.getRepository.resolve(Constants.HEAD + "^{commit}")
-        val content  = if(description.nonEmpty){
-          name + "\n" +
-          "===============\n" +
-          "\n" +
-          description.get
-        } else {
-          name + "\n" +
-          "===============\n"
-        }
-
-        builder.add(JGitUtil.createDirCacheEntry("README.md", FileMode.REGULAR_FILE,
-          inserter.insert(Constants.OBJ_BLOB, content.getBytes("UTF-8"))))
-        builder.finish()
-
-        JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter),
-          Constants.HEAD, loginAccount.fullName, loginAccount.mailAddress, "Initial commit")
-      }
-    }
-
-    // Create Wiki repository
-    createWikiRepository(loginAccount, owner, name)
-
-    // Record activity
-    recordCreateRepositoryActivity(owner, name, loginUserName)
-  }
-
-  private def insertDefaultLabels(userName: String, repositoryName: String): Unit = {
-    createLabel(userName, repositoryName, "bug", "fc2929")
-    createLabel(userName, repositoryName, "duplicate", "cccccc")
-    createLabel(userName, repositoryName, "enhancement", "84b6eb")
-    createLabel(userName, repositoryName, "invalid", "e6e6e6")
-    createLabel(userName, repositoryName, "question", "cc317c")
-    createLabel(userName, repositoryName, "wontfix", "ffffff")
-  }
-
   private def existsAccount: Constraint = new Constraint(){
     override def validate(name: String, value: String, messages: Messages): Option[String] =
       if(getAccountByUserName(value).isEmpty) Some("User or group does not exist.") else None

src/main/scala/gitbucket/core/controller/ApiController.scala

@@ -0,0 +1,389 @@
+package gitbucket.core.controller
+
+import gitbucket.core.api._
+import gitbucket.core.model._
+import gitbucket.core.service.IssuesService.IssueSearchCondition
+import gitbucket.core.service.PullRequestService._
+import gitbucket.core.service._
+import gitbucket.core.util.ControlUtil._
+import gitbucket.core.util.Directory._
+import gitbucket.core.util.JGitUtil.CommitInfo
+import gitbucket.core.util._
+import gitbucket.core.util.Implicits._
+import org.eclipse.jgit.api.Git
+import org.scalatra.{NoContent, UnprocessableEntity, Created}
+import scala.collection.JavaConverters._
+
+class ApiController extends ApiControllerBase
+  with RepositoryService
+  with AccountService
+  with ProtectedBranchService
+  with IssuesService
+  with LabelsService
+  with PullRequestService
+  with CommitStatusService
+  with RepositoryCreationService
+  with HandleCommentService
+  with WebHookService
+  with WebHookPullRequestService
+  with WebHookIssueCommentService
+  with WikiService
+  with ActivityService
+  with OwnerAuthenticator
+  with UsersAuthenticator
+  with GroupManagerAuthenticator
+  with ReferrerAuthenticator
+  with ReadableUsersAuthenticator
+  with CollaboratorsAuthenticator
+
+trait ApiControllerBase extends ControllerBase {
+  self: RepositoryService
+    with AccountService
+    with ProtectedBranchService
+    with IssuesService
+    with LabelsService
+    with PullRequestService
+    with CommitStatusService
+    with RepositoryCreationService
+    with HandleCommentService
+    with OwnerAuthenticator
+    with UsersAuthenticator
+    with GroupManagerAuthenticator
+    with ReferrerAuthenticator
+    with ReadableUsersAuthenticator
+    with CollaboratorsAuthenticator =>
+
+  /**
+   * https://developer.github.com/v3/users/#get-a-single-user
+   */
+  get("/api/v3/users/:userName") {
+    getAccountByUserName(params("userName")).map { account =>
+      JsonFormat(ApiUser(account))
+    } getOrElse NotFound
+  }
+
+  /**
+   * https://developer.github.com/v3/users/#get-the-authenticated-user
+   */
+  get("/api/v3/user") {
+    context.loginAccount.map { account =>
+      JsonFormat(ApiUser(account))
+    } getOrElse Unauthorized
+  }
+
+  /**
+   * Create user repository
+   * https://developer.github.com/v3/repos/#create
+   */
+  post("/api/v3/user/repos")(usersOnly {
+    val owner = context.loginAccount.get.userName
+    (for {
+      data <- extractFromJsonBody[CreateARepository] if data.isValid
+    } yield {
+      LockUtil.lock(s"${owner}/${data.name}") {
+        if(getRepository(owner, data.name).isEmpty){
+          createRepository(context.loginAccount.get, owner, data.name, data.description, data.`private`, data.auto_init)
+          val repository = getRepository(owner, data.name).get
+          JsonFormat(ApiRepository(repository, ApiUser(getAccountByUserName(owner).get)))
+        } else {
+          ApiError(
+            "A repository with this name already exists on this account",
+            Some("https://developer.github.com/v3/repos/#create")
+          )
+        }
+      }
+    }) getOrElse NotFound
+  })
+
+  /**
+   * Create group repository
+   * https://developer.github.com/v3/repos/#create
+   */
+  post("/api/v3/orgs/:org/repos")(managersOnly {
+    val groupName = params("org")
+    (for {
+      data <- extractFromJsonBody[CreateARepository] if data.isValid
+    } yield {
+      LockUtil.lock(s"${groupName}/${data.name}") {
+        if(getRepository(groupName, data.name).isEmpty){
+          createRepository(context.loginAccount.get, groupName, data.name, data.description, data.`private`, data.auto_init)
+          val repository = getRepository(groupName, data.name).get
+          JsonFormat(ApiRepository(repository, ApiUser(getAccountByUserName(groupName).get)))
+        } else {
+          ApiError(
+            "A repository with this name already exists for this group",
+            Some("https://developer.github.com/v3/repos/#create")
+          )
+        }
+      }
+    }) getOrElse NotFound
+  })
+
+  /** https://developer.github.com/v3/repos/#enabling-and-disabling-branch-protection */
+  patch("/api/v3/repos/:owner/:repo/branches/:branch")(ownerOnly { repository =>
+    import gitbucket.core.api._
+    (for{
+      branch <- params.get("branch") if repository.branchList.find(_ == branch).isDefined
+      protection <- extractFromJsonBody[ApiBranchProtection.EnablingAndDisabling].map(_.protection)
+    } yield {
+      if(protection.enabled){
+        enableBranchProtection(repository.owner, repository.name, branch, protection.status.enforcement_level == ApiBranchProtection.Everyone, protection.status.contexts)
+      } else {
+        disableBranchProtection(repository.owner, repository.name, branch)
+      }
+      JsonFormat(ApiBranch(branch, protection)(RepositoryName(repository)))
+    }) getOrElse NotFound
+  })
+
+  /**
+   * @see https://developer.github.com/v3/rate_limit/#get-your-current-rate-limit-status
+   * but not enabled.
+   */
+  get("/api/v3/rate_limit"){
+    contentType = formats("json")
+    // this message is same as github enterprise...
+    org.scalatra.NotFound(ApiError("Rate limiting is not enabled."))
+  }
+
+  /**
+   * https://developer.github.com/v3/issues/comments/#list-comments-on-an-issue
+   */
+  get("/api/v3/repos/:owner/:repository/issues/:id/comments")(referrersOnly { repository =>
+    (for{
+      issueId <- params("id").toIntOpt
+      comments = getCommentsForApi(repository.owner, repository.name, issueId.toInt)
+    } yield {
+      JsonFormat(comments.map{ case (issueComment, user, issue) => ApiComment(issueComment, RepositoryName(repository), issueId, ApiUser(user), issue.isPullRequest) })
+    }).getOrElse(NotFound)
+  })
+
+  /**
+   * https://developer.github.com/v3/issues/comments/#create-a-comment
+   */
+  post("/api/v3/repos/:owner/:repository/issues/:id/comments")(readableUsersOnly { repository =>
+    (for{
+      issueId      <- params("id").toIntOpt
+      issue        <- getIssue(repository.owner, repository.name, issueId.toString)
+      body         <- extractFromJsonBody[CreateAComment].map(_.body) if ! body.isEmpty
+      action       =  params.get("action").filter(_ => isEditable(issue.userName, issue.repositoryName, issue.openedUserName))
+      (issue, id)  <- handleComment(issue, Some(body), repository, action)
+      issueComment <- getComment(repository.owner, repository.name, id.toString())
+    } yield {
+      JsonFormat(ApiComment(issueComment, RepositoryName(repository), issueId, ApiUser(context.loginAccount.get), issue.isPullRequest))
+    }) getOrElse NotFound
+  })
+
+  /**
+   * List all labels for this repository
+   * https://developer.github.com/v3/issues/labels/#list-all-labels-for-this-repository
+   */
+  get("/api/v3/repos/:owner/:repository/labels")(referrersOnly { repository =>
+    JsonFormat(getLabels(repository.owner, repository.name).map { label =>
+      ApiLabel(label, RepositoryName(repository))
+    })
+  })
+
+  /**
+   * Get a single label
+   * https://developer.github.com/v3/issues/labels/#get-a-single-label
+   */
+  get("/api/v3/repos/:owner/:repository/labels/:labelName")(referrersOnly { repository =>
+    getLabel(repository.owner, repository.name, params("labelName")).map { label =>
+      JsonFormat(ApiLabel(label, RepositoryName(repository)))
+    } getOrElse NotFound()
+  })
+
+  /**
+   * Create a label
+   * https://developer.github.com/v3/issues/labels/#create-a-label
+   */
+  post("/api/v3/repos/:owner/:repository/labels")(collaboratorsOnly { repository =>
+    (for{
+      data <- extractFromJsonBody[CreateALabel] if data.isValid
+    } yield {
+      LockUtil.lock(RepositoryName(repository).fullName) {
+        if (getLabel(repository.owner, repository.name, data.name).isEmpty) {
+          val labelId = createLabel(repository.owner, repository.name, data.name, data.color)
+          getLabel(repository.owner, repository.name, labelId).map { label =>
+            Created(JsonFormat(ApiLabel(label, RepositoryName(repository))))
+          } getOrElse NotFound()
+        } else {
+          // TODO ApiError should support errors field to enhance compatibility of GitHub API
+          UnprocessableEntity(ApiError(
+            "Validation Failed",
+            Some("https://developer.github.com/v3/issues/labels/#create-a-label")
+          ))
+        }
+      }
+    }) getOrElse NotFound()
+  })
+
+  /**
+   * Update a label
+   * https://developer.github.com/v3/issues/labels/#update-a-label
+   */
+  patch("/api/v3/repos/:owner/:repository/labels/:labelName")(collaboratorsOnly { repository =>
+    (for{
+      data <- extractFromJsonBody[CreateALabel] if data.isValid
+    } yield {
+      LockUtil.lock(RepositoryName(repository).fullName) {
+        getLabel(repository.owner, repository.name, params("labelName")).map { label =>
+          if (getLabel(repository.owner, repository.name, data.name).isEmpty) {
+            updateLabel(repository.owner, repository.name, label.labelId, data.name, data.color)
+            JsonFormat(ApiLabel(
+              getLabel(repository.owner, repository.name, label.labelId).get,
+              RepositoryName(repository)))
+          } else {
+            // TODO ApiError should support errors field to enhance compatibility of GitHub API
+            UnprocessableEntity(ApiError(
+              "Validation Failed",
+              Some("https://developer.github.com/v3/issues/labels/#create-a-label")))
+          }
+        } getOrElse NotFound()
+      }
+    }) getOrElse NotFound()
+  })
+
+  /**
+   * Delete a label
+   * https://developer.github.com/v3/issues/labels/#delete-a-label
+   */
+  delete("/api/v3/repos/:owner/:repository/labels/:labelName")(collaboratorsOnly { repository =>
+    LockUtil.lock(RepositoryName(repository).fullName) {
+      getLabel(repository.owner, repository.name, params("labelName")).map { label =>
+        deleteLabel(repository.owner, repository.name, label.labelId)
+        NoContent()
+      } getOrElse NotFound()
+    }
+  })
+
+  /**
+   * https://developer.github.com/v3/pulls/#list-pull-requests
+   */
+  get("/api/v3/repos/:owner/:repository/pulls")(referrersOnly { repository =>
+    val page       = IssueSearchCondition.page(request)
+    // TODO: more api spec condition
+    val condition = IssueSearchCondition(request)
+    val baseOwner = getAccountByUserName(repository.owner).get
+    val issues:List[(Issue, Account, Int, PullRequest, Repository, Account)] = searchPullRequestByApi(condition, (page - 1) * PullRequestLimit, PullRequestLimit, repository.owner -> repository.name)
+    JsonFormat(issues.map{case (issue, issueUser, commentCount, pullRequest, headRepo, headOwner) =>
+      ApiPullRequest(
+        issue,
+        pullRequest,
+        ApiRepository(headRepo, ApiUser(headOwner)),
+        ApiRepository(repository, ApiUser(baseOwner)),
+        ApiUser(issueUser)) })
+  })
+
+  /**
+   * https://developer.github.com/v3/pulls/#get-a-single-pull-request
+   */
+  get("/api/v3/repos/:owner/:repository/pulls/:id")(referrersOnly { repository =>
+    (for{
+      issueId <- params("id").toIntOpt
+      (issue, pullRequest) <- getPullRequest(repository.owner, repository.name, issueId)
+      users = getAccountsByUserNames(Set(repository.owner, pullRequest.requestUserName, issue.openedUserName), Set())
+      baseOwner <- users.get(repository.owner)
+      headOwner <- users.get(pullRequest.requestUserName)
+      issueUser <- users.get(issue.openedUserName)
+      headRepo  <- getRepository(pullRequest.requestUserName, pullRequest.requestRepositoryName)
+    } yield {
+      JsonFormat(ApiPullRequest(
+        issue,
+        pullRequest,
+        ApiRepository(headRepo, ApiUser(headOwner)),
+        ApiRepository(repository, ApiUser(baseOwner)),
+        ApiUser(issueUser)))
+    }).getOrElse(NotFound)
+  })
+
+  /**
+   * https://developer.github.com/v3/pulls/#list-commits-on-a-pull-request
+   */
+  get("/api/v3/repos/:owner/:repository/pulls/:id/commits")(referrersOnly { repository =>
+    val owner = repository.owner
+    val name = repository.name
+    params("id").toIntOpt.flatMap{ issueId =>
+      getPullRequest(owner, name, issueId) map { case(issue, pullreq) =>
+        using(Git.open(getRepositoryDir(owner, name))){ git =>
+          val oldId = git.getRepository.resolve(pullreq.commitIdFrom)
+          val newId = git.getRepository.resolve(pullreq.commitIdTo)
+          val repoFullName = RepositoryName(repository)
+          val commits = git.log.addRange(oldId, newId).call.iterator.asScala.map(c => ApiCommitListItem(new CommitInfo(c), repoFullName)).toList
+          JsonFormat(commits)
+        }
+      }
+    } getOrElse NotFound
+  })
+
+  /**
+   * https://developer.github.com/v3/repos/#get
+   */
+  get("/api/v3/repos/:owner/:repository")(referrersOnly { repository =>
+    JsonFormat(ApiRepository(repository, ApiUser(getAccountByUserName(repository.owner).get)))
+  })
+
+  /**
+   * https://developer.github.com/v3/repos/statuses/#create-a-status
+   */
+  post("/api/v3/repos/:owner/:repo/statuses/:sha")(collaboratorsOnly { repository =>
+    (for{
+      ref <- params.get("sha")
+      sha <- JGitUtil.getShaByRef(repository.owner, repository.name, ref)
+      data <- extractFromJsonBody[CreateAStatus] if data.isValid
+      creator <- context.loginAccount
+      state <- CommitState.valueOf(data.state)
+      statusId = createCommitStatus(repository.owner, repository.name, sha, data.context.getOrElse("default"),
+        state, data.target_url, data.description, new java.util.Date(), creator)
+      status <- getCommitStatus(repository.owner, repository.name, statusId)
+    } yield {
+      JsonFormat(ApiCommitStatus(status, ApiUser(creator)))
+    }) getOrElse NotFound
+  })
+
+  /**
+   * https://developer.github.com/v3/repos/statuses/#list-statuses-for-a-specific-ref
+   *
+   * ref is Ref to list the statuses from. It can be a SHA, a branch name, or a tag name.
+   */
+  val listStatusesRoute = get("/api/v3/repos/:owner/:repo/commits/:ref/statuses")(referrersOnly { repository =>
+    (for{
+      ref <- params.get("ref")
+      sha <- JGitUtil.getShaByRef(repository.owner, repository.name, ref)
+    } yield {
+      JsonFormat(getCommitStatuesWithCreator(repository.owner, repository.name, sha).map{ case(status, creator) =>
+        ApiCommitStatus(status, ApiUser(creator))
+      })
+    }) getOrElse NotFound
+  })
+
+  /**
+   * https://developer.github.com/v3/repos/statuses/#list-statuses-for-a-specific-ref
+   *
+   * legacy route
+   */
+  get("/api/v3/repos/:owner/:repo/statuses/:ref"){
+    listStatusesRoute.action()
+  }
+
+  /**
+   * https://developer.github.com/v3/repos/statuses/#get-the-combined-status-for-a-specific-ref
+   *
+   * ref is Ref to list the statuses from. It can be a SHA, a branch name, or a tag name.
+   */
+  get("/api/v3/repos/:owner/:repo/commits/:ref/status")(referrersOnly { repository =>
+    (for{
+      ref <- params.get("ref")
+      owner <- getAccountByUserName(repository.owner)
+      sha <- JGitUtil.getShaByRef(repository.owner, repository.name, ref)
+    } yield {
+      val statuses = getCommitStatuesWithCreator(repository.owner, repository.name, sha)
+      JsonFormat(ApiCombinedCommitStatus(sha, statuses, ApiRepository(repository, owner)))
+    }) getOrElse NotFound
+  })
+
+  private def isEditable(owner: String, repository: String, author: String)(implicit context: Context): Boolean =
+    hasWritePermission(owner, repository, context.loginAccount) || author == context.loginAccount.get.userName
+
+}
+

src/main/scala/gitbucket/core/controller/ControllerBase.scala

@@ -50,7 +50,7 @@ abstract class ControllerBase extends ScalatraFilter
       if(account == null){
         // Redirect to login form
         httpResponse.sendRedirect(baseUrl + "/signin?redirect=" + StringUtil.urlEncode(path))
-      } else if(account.isAdmin){
+      } else if(account.administrator){
         // H2 Console (administrators only)
         chain.doFilter(request, response)
       } else {
@@ -180,7 +180,6 @@ abstract class ControllerBase extends ScalatraFilter
  * Context object for the current request.
  */
 case class Context(settings: SystemSettingsService.SystemSettings, loginAccount: Option[Account], request: HttpServletRequest){
-
   val path = settings.baseUrl.getOrElse(request.getContextPath)
   val currentPath = request.getRequestURI.substring(request.getContextPath.length)
   val baseUrl = settings.baseUrl(request)

src/main/scala/gitbucket/core/controller/DashboardController.scala

@@ -94,7 +94,7 @@ trait DashboardControllerBase extends ControllerBase {
 
     val userName  = context.loginAccount.get.userName
     val condition = getOrCreateCondition(Keys.Session.DashboardIssues, filter, userName)
-    val userRepos = getUserRepositories(userName, context.baseUrl, true).map(repo => repo.owner -> repo.name)
+    val userRepos = getUserRepositories(userName, true).map(repo => repo.owner -> repo.name)
     val page      = IssueSearchCondition.page(request)
 
     html.issues(

src/main/scala/gitbucket/core/controller/IndexController.scala

@@ -2,35 +2,46 @@ package gitbucket.core.controller
 
 import gitbucket.core.api._
 import gitbucket.core.helper.xml
-import gitbucket.core.html
 import gitbucket.core.model.Account
-import gitbucket.core.service.{RepositoryService, ActivityService, AccountService}
+import gitbucket.core.service.{RepositoryService, ActivityService, AccountService, RepositorySearchService, IssuesService}
 import gitbucket.core.util.Implicits._
-import gitbucket.core.util.{LDAPUtil, Keys, UsersAuthenticator}
+import gitbucket.core.util.ControlUtil._
+import gitbucket.core.util.{LDAPUtil, Keys, UsersAuthenticator, ReferrerAuthenticator, StringUtil}
 
 import io.github.gitbucket.scalatra.forms._
 
 
 class IndexController extends IndexControllerBase 
-  with RepositoryService with ActivityService with AccountService with UsersAuthenticator
+  with RepositoryService with ActivityService with AccountService with RepositorySearchService with IssuesService
+  with UsersAuthenticator with ReferrerAuthenticator
 
 
 trait IndexControllerBase extends ControllerBase {
-  self: RepositoryService with ActivityService with AccountService with UsersAuthenticator =>
+  self: RepositoryService with ActivityService with AccountService with RepositorySearchService
+    with UsersAuthenticator with ReferrerAuthenticator =>
 
   case class SignInForm(userName: String, password: String)
 
-  val form = mapping(
+  val signinForm = mapping(
     "userName" -> trim(label("Username", text(required))),
     "password" -> trim(label("Password", text(required)))
   )(SignInForm.apply)
 
+  val searchForm = mapping(
+    "query"      -> trim(text(required)),
+    "owner"      -> trim(text(required)),
+    "repository" -> trim(text(required))
+  )(SearchForm.apply)
+
+  case class SearchForm(query: String, owner: String, repository: String)
+
+
   get("/"){
     val loginAccount = context.loginAccount
     if(loginAccount.isEmpty) {
-        html.index(getRecentActivities(),
-            getVisibleRepositories(loginAccount, context.baseUrl, withoutPhysicalInfo = true),
-            loginAccount.map{ account => getUserRepositories(account.userName, context.baseUrl, withoutPhysicalInfo = true) }.getOrElse(Nil)
+        gitbucket.core.html.index(getRecentActivities(),
+            getVisibleRepositories(loginAccount, withoutPhysicalInfo = true),
+            loginAccount.map{ account => getUserRepositories(account.userName, withoutPhysicalInfo = true) }.getOrElse(Nil)
         )
     } else {
         val loginUserName = loginAccount.get.userName
@@ -39,9 +50,9 @@ trait IndexControllerBase extends ControllerBase {
         
         visibleOwnerSet ++= loginUserGroups
 
-        html.index(getRecentActivitiesByOwners(visibleOwnerSet),
-            getVisibleRepositories(loginAccount, context.baseUrl, withoutPhysicalInfo = true),
-            loginAccount.map{ account => getUserRepositories(account.userName, context.baseUrl, withoutPhysicalInfo = true) }.getOrElse(Nil) 
+        gitbucket.core.html.index(getRecentActivitiesByOwners(visibleOwnerSet),
+            getVisibleRepositories(loginAccount, withoutPhysicalInfo = true),
+            loginAccount.map{ account => getUserRepositories(account.userName, withoutPhysicalInfo = true) }.getOrElse(Nil) 
         )
     }
   }
@@ -51,10 +62,10 @@ trait IndexControllerBase extends ControllerBase {
     if(redirect.isDefined && redirect.get.startsWith("/")){
       flash += Keys.Flash.Redirect -> redirect.get
     }
-    html.signin()
+    gitbucket.core.html.signin()
   }
 
-  post("/signin", form){ form =>
+  post("/signin", signinForm){ form =>
     authenticate(context.settings, form.userName, form.password) match {
       case Some(account) => signin(account)
       case None          => redirect("/signin")
@@ -99,7 +110,7 @@ trait IndexControllerBase extends ControllerBase {
   get("/_user/proposals")(usersOnly {
     contentType = formats("json")
     org.json4s.jackson.Serialization.write(
-      Map("options" -> getAllUsers(false).filter(!_.isGroupAccount).map(_.userName).toArray)
+      Map("options" -> getAllUsers(false).filter(!_.groupAccount).map(_.userName).toArray)
     )
   })
 
@@ -110,13 +121,32 @@ trait IndexControllerBase extends ControllerBase {
     getAccountByUserName(params("userName")).isDefined
   })
 
-  /**
-   * @see https://developer.github.com/v3/rate_limit/#get-your-current-rate-limit-status
-   * but not enabled.
-   */
-  get("/api/v3/rate_limit"){
-    contentType = formats("json")
-    // this message is same as github enterprise...
-    org.scalatra.NotFound(ApiError("Rate limiting is not enabled."))
+  // TODO Move to RepositoryViwerController?
+  post("/search", searchForm){ form =>
+    redirect(s"/${form.owner}/${form.repository}/search?q=${StringUtil.urlEncode(form.query)}")
   }
+
+  // TODO Move to RepositoryViwerController?
+  get("/:owner/:repository/search")(referrersOnly { repository =>
+    defining(params("q").trim, params.getOrElse("type", "code")){ case (query, target) =>
+      val page   = try {
+        val i = params.getOrElse("page", "1").toInt
+        if(i <= 0) 1 else i
+      } catch {
+        case e: NumberFormatException => 1
+      }
+
+      target.toLowerCase match {
+        case "issue" => gitbucket.core.search.html.issues(
+          searchIssues(repository.owner, repository.name, query),
+          countFiles(repository.owner, repository.name, query),
+          query, page, repository)
+
+        case _ => gitbucket.core.search.html.code(
+          searchFiles(repository.owner, repository.name, query),
+          countIssues(repository.owner, repository.name, query),
+          query, page, repository)
+      }
+    }
+  })
 }

src/main/scala/gitbucket/core/controller/IssuesController.scala

@@ -1,8 +1,6 @@
 package gitbucket.core.controller
 
-import gitbucket.core.api._
 import gitbucket.core.issues.html
-import gitbucket.core.model.Issue
 import gitbucket.core.service.IssuesService._
 import gitbucket.core.service._
 import gitbucket.core.util.ControlUtil._
@@ -16,11 +14,11 @@ import org.scalatra.Ok
 
 
 class IssuesController extends IssuesControllerBase
-  with IssuesService with RepositoryService with AccountService with LabelsService with MilestonesService with ActivityService
+  with IssuesService with RepositoryService with AccountService with LabelsService with MilestonesService with ActivityService with HandleCommentService
   with ReadableUsersAuthenticator with ReferrerAuthenticator with CollaboratorsAuthenticator with PullRequestService with WebHookIssueCommentService
 
 trait IssuesControllerBase extends ControllerBase {
-  self: IssuesService with RepositoryService with AccountService with LabelsService with MilestonesService with ActivityService
+  self: IssuesService with RepositoryService with AccountService with LabelsService with MilestonesService with ActivityService with HandleCommentService
     with ReadableUsersAuthenticator with ReferrerAuthenticator with CollaboratorsAuthenticator with PullRequestService with WebHookIssueCommentService =>
 
   case class IssueCreateForm(title: String, content: Option[String],
@@ -69,7 +67,7 @@ trait IssuesControllerBase extends ControllerBase {
           _,
           getComments(owner, name, issueId.toInt),
           getIssueLabels(owner, name, issueId.toInt),
-          (getCollaborators(owner, name) ::: (if(getAccountByUserName(owner).get.isGroupAccount) Nil else List(owner))).sorted,
+          (getCollaborators(owner, name) ::: (if(getAccountByUserName(owner).get.groupAccount) Nil else List(owner))).sorted,
           getMilestonesWithIssueCount(owner, name),
           getLabels(owner, name),
           hasWritePermission(owner, name, context.loginAccount),
@@ -78,22 +76,10 @@ trait IssuesControllerBase extends ControllerBase {
     }
   })
 
-  /**
-   * https://developer.github.com/v3/issues/comments/#list-comments-on-an-issue
-   */
-  get("/api/v3/repos/:owner/:repository/issues/:id/comments")(referrersOnly { repository =>
-    (for{
-      issueId <- params("id").toIntOpt
-      comments = getCommentsForApi(repository.owner, repository.name, issueId.toInt)
-    } yield {
-      JsonFormat(comments.map{ case (issueComment, user, issue) => ApiComment(issueComment, RepositoryName(repository), issueId, ApiUser(user), issue.isPullRequest) })
-    }).getOrElse(NotFound)
-  })
-
   get("/:owner/:repository/issues/new")(readableUsersOnly { repository =>
     defining(repository.owner, repository.name){ case (owner, name) =>
       html.create(
-        (getCollaborators(owner, name) ::: (if(getAccountByUserName(owner).get.isGroupAccount) Nil else List(owner))).sorted,
+        (getCollaborators(owner, name) ::: (if(getAccountByUserName(owner).get.groupAccount) Nil else List(owner))).sorted,
           getMilestones(owner, name),
           getLabels(owner, name),
           hasWritePermission(owner, name, context.loginAccount),
@@ -128,7 +114,7 @@ trait IssuesControllerBase extends ControllerBase {
 
       getIssue(owner, name, issueId.toString).foreach { issue =>
         // extract references and create refer comment
-        createReferComment(owner, name, issue, form.title + " " + form.content.getOrElse(""))
+        createReferComment(owner, name, issue, form.title + " " + form.content.getOrElse(""), context.loginAccount.get)
 
         // call web hooks
         callIssuesWebHook("opened", repository, issue, context.baseUrl, context.loginAccount.get)
@@ -150,7 +136,7 @@ trait IssuesControllerBase extends ControllerBase {
           // update issue
           updateIssue(owner, name, issue.issueId, title, issue.content)
           // extract references and create refer comment
-          createReferComment(owner, name, issue.copy(title = title), title)
+          createReferComment(owner, name, issue.copy(title = title), title, context.loginAccount.get)
 
           redirect(s"/${owner}/${name}/issues/_data/${issue.issueId}")
         } else Unauthorized
@@ -165,7 +151,7 @@ trait IssuesControllerBase extends ControllerBase {
           // update issue
           updateIssue(owner, name, issue.issueId, issue.title, content)
           // extract references and create refer comment
-          createReferComment(owner, name, issue, content.getOrElse(""))
+          createReferComment(owner, name, issue, content.getOrElse(""), context.loginAccount.get)
 
           redirect(s"/${owner}/${name}/issues/_data/${issue.issueId}")
         } else Unauthorized
@@ -174,30 +160,22 @@ trait IssuesControllerBase extends ControllerBase {
   })
 
   post("/:owner/:repository/issue_comments/new", commentForm)(readableUsersOnly { (form, repository) =>
-    handleComment(form.issueId, Some(form.content), repository)() map { case (issue, id) =>
-      redirect(s"/${repository.owner}/${repository.name}/${
-        if(issue.isPullRequest) "pull" else "issues"}/${form.issueId}#comment-${id}")
+    getIssue(repository.owner, repository.name, form.issueId.toString).flatMap { issue =>
+      val actionOpt = params.get("action").filter(_ => isEditable(issue.userName, issue.repositoryName, issue.openedUserName))
+      handleComment(issue, Some(form.content), repository, actionOpt) map { case (issue, id) =>
+        redirect(s"/${repository.owner}/${repository.name}/${
+          if(issue.isPullRequest) "pull" else "issues"}/${form.issueId}#comment-${id}")
+      }
     } getOrElse NotFound
   })
 
-  /**
-   * https://developer.github.com/v3/issues/comments/#create-a-comment
-   */
-  post("/api/v3/repos/:owner/:repository/issues/:id/comments")(readableUsersOnly { repository =>
-    (for{
-      issueId <- params("id").toIntOpt
-      body <- extractFromJsonBody[CreateAComment].map(_.body) if ! body.isEmpty
-      (issue, id) <- handleComment(issueId, Some(body), repository)()
-      issueComment <- getComment(repository.owner, repository.name, id.toString())
-    } yield {
-      JsonFormat(ApiComment(issueComment, RepositoryName(repository), issueId, ApiUser(context.loginAccount.get), issue.isPullRequest))
-    }) getOrElse NotFound
-  })
-
   post("/:owner/:repository/issue_comments/state", issueStateForm)(readableUsersOnly { (form, repository) =>
-    handleComment(form.issueId, form.content, repository)() map { case (issue, id) =>
-      redirect(s"/${repository.owner}/${repository.name}/${
-        if(issue.isPullRequest) "pull" else "issues"}/${form.issueId}#comment-${id}")
+    getIssue(repository.owner, repository.name, form.issueId.toString).flatMap { issue =>
+      val actionOpt = params.get("action").filter(_ => isEditable(issue.userName, issue.repositoryName, issue.openedUserName))
+      handleComment(issue, form.content, repository, actionOpt) map { case (issue, id) =>
+        redirect(s"/${repository.owner}/${repository.name}/${
+          if(issue.isPullRequest) "pull" else "issues"}/${form.issueId}#comment-${id}")
+      }
     } getOrElse NotFound
   })
 
@@ -315,8 +293,16 @@ trait IssuesControllerBase extends ControllerBase {
   post("/:owner/:repository/issues/batchedit/state")(collaboratorsOnly { repository =>
     defining(params.get("value")){ action =>
       action match {
-        case Some("open")  => executeBatch(repository) { handleComment(_, None, repository)( _ => Some("reopen")) }
-        case Some("close") => executeBatch(repository) { handleComment(_, None, repository)( _ => Some("close"))  }
+        case Some("open")  => executeBatch(repository) { issueId =>
+          getIssue(repository.owner, repository.name, issueId.toString).foreach { issue =>
+            handleComment(issue, None, repository, Some("reopen"))
+          }
+        }
+        case Some("close") => executeBatch(repository) { issueId =>
+          getIssue(repository.owner, repository.name, issueId.toString).foreach { issue =>
+            handleComment(issue, None, repository, Some("close"))
+          }
+        }
         case _ => // TODO BadRequest
       }
     }
@@ -373,99 +359,6 @@ trait IssuesControllerBase extends ControllerBase {
     }
   }
 
-  // TODO Same method exists in PullRequestController. Should it moved to IssueService?
-  private def createReferComment(owner: String, repository: String, fromIssue: Issue, message: String) = {
-    StringUtil.extractIssueId(message).foreach { issueId =>
-      val content = fromIssue.issueId + ":" + fromIssue.title
-      if(getIssue(owner, repository, issueId).isDefined){
-        // Not add if refer comment already exist.
-        if(!getComments(owner, repository, issueId.toInt).exists { x => x.action == "refer" && x.content == content }) {
-          createComment(owner, repository, context.loginAccount.get.userName, issueId.toInt, content, "refer")
-        }
-      }
-    }
-  }
-
-  /**
-   * @see [[https://github.com/takezoe/gitbucket/wiki/CommentAction]]
-   */
-  private def handleComment(issueId: Int, content: Option[String], repository: RepositoryService.RepositoryInfo)
-      (getAction: Issue => Option[String] =
-           p1 => params.get("action").filter(_ => isEditable(p1.userName, p1.repositoryName, p1.openedUserName))) = {
-
-    defining(repository.owner, repository.name){ case (owner, name) =>
-      val userName = context.loginAccount.get.userName
-
-      getIssue(owner, name, issueId.toString) flatMap { issue =>
-        val (action, recordActivity) =
-          getAction(issue)
-            .collect {
-              case "close" if(!issue.closed) => true  ->
-                (Some("close")  -> Some(if(issue.isPullRequest) recordClosePullRequestActivity _ else recordCloseIssueActivity _))
-              case "reopen" if(issue.closed) => false ->
-                (Some("reopen") -> Some(recordReopenIssueActivity _))
-            }
-            .map { case (closed, t) =>
-              updateClosed(owner, name, issueId, closed)
-              t
-            }
-            .getOrElse(None -> None)
-
-        val commentId = (content, action) match {
-          case (None, None) => None
-          case (None, Some(action)) => Some(createComment(owner, name, userName, issueId, action.capitalize, action))
-          case (Some(content), _) => Some(createComment(owner, name, userName, issueId, content, action.map(_+ "_comment").getOrElse("comment")))
-        }
-
-        // record comment activity if comment is entered
-        content foreach {
-          (if(issue.isPullRequest) recordCommentPullRequestActivity _ else recordCommentIssueActivity _)
-          (owner, name, userName, issueId, _)
-        }
-        recordActivity foreach ( _ (owner, name, userName, issueId, issue.title) )
-
-        // extract references and create refer comment
-        content.map { content =>
-          createReferComment(owner, name, issue, content)
-        }
-
-        // call web hooks
-        action match {
-          case None => commentId.map{ commentIdSome => callIssueCommentWebHook(repository, issue, commentIdSome, context.loginAccount.get) }
-          case Some(act) => val webHookAction = act match {
-            case "open"   => "opened"
-            case "reopen" => "reopened"
-            case "close"  => "closed"
-            case _ => act
-          }
-          if(issue.isPullRequest){
-            callPullRequestWebHook(webHookAction, repository, issue.issueId, context.baseUrl, context.loginAccount.get)
-          } else {
-            callIssuesWebHook(webHookAction, repository, issue, context.baseUrl, context.loginAccount.get)
-          }
-        }
-
-        // notifications
-        Notifier() match {
-          case f =>
-            content foreach {
-              f.toNotify(repository, issue, _){
-                Notifier.msgComment(s"${context.baseUrl}/${owner}/${name}/${
-                  if(issue.isPullRequest) "pull" else "issues"}/${issueId}#comment-${commentId.get}")
-              }
-            }
-            action foreach {
-              f.toNotify(repository, issue, _){
-                Notifier.msgStatus(s"${context.baseUrl}/${owner}/${name}/issues/${issueId}")
-              }
-            }
-        }
-
-        commentId.map( issue -> _ )
-      }
-    }
-  }
-
   private def searchIssues(repository: RepositoryService.RepositoryInfo) = {
     defining(repository.owner, repository.name){ case (owner, repoName) =>
       val page       = IssueSearchCondition.page(request)
@@ -487,7 +380,7 @@ trait IssuesControllerBase extends ControllerBase {
           "issues",
           searchIssue(condition, false, (page - 1) * IssueLimit, IssueLimit, owner -> repoName),
           page,
-          if(!getAccountByUserName(owner).exists(_.isGroupAccount)){
+          if(!getAccountByUserName(owner).exists(_.groupAccount)){
             (getCollaborators(owner, repoName) :+ owner).sorted
           } else {
             getCollaborators(owner, repoName)

src/main/scala/gitbucket/core/controller/LabelsController.scala

@@ -1,13 +1,12 @@
 package gitbucket.core.controller
 
-import gitbucket.core.api.{ApiError, CreateALabel, ApiLabel, JsonFormat}
 import gitbucket.core.issues.labels.html
 import gitbucket.core.service.{RepositoryService, AccountService, IssuesService, LabelsService}
-import gitbucket.core.util.{LockUtil, RepositoryName, ReferrerAuthenticator, CollaboratorsAuthenticator}
+import gitbucket.core.util.{ReferrerAuthenticator, CollaboratorsAuthenticator}
 import gitbucket.core.util.Implicits._
 import io.github.gitbucket.scalatra.forms._
 import org.scalatra.i18n.Messages
-import org.scalatra.{NoContent, UnprocessableEntity, Created, Ok}
+import org.scalatra.Ok
 
 class LabelsController extends LabelsControllerBase
   with LabelsService with IssuesService with RepositoryService with AccountService
@@ -32,26 +31,6 @@ trait LabelsControllerBase extends ControllerBase {
       hasWritePermission(repository.owner, repository.name, context.loginAccount))
   })
 
-  /**
-    * List all labels for this repository
-    * https://developer.github.com/v3/issues/labels/#list-all-labels-for-this-repository
-    */
-  get("/api/v3/repos/:owner/:repository/labels")(referrersOnly { repository =>
-    JsonFormat(getLabels(repository.owner, repository.name).map { label =>
-      ApiLabel(label, RepositoryName(repository))
-    })
-  })
-
-  /**
-    * Get a single label
-    * https://developer.github.com/v3/issues/labels/#get-a-single-label
-    */
-  get("/api/v3/repos/:owner/:repository/labels/:labelName")(referrersOnly { repository =>
-    getLabel(repository.owner, repository.name, params("labelName")).map { label =>
-      JsonFormat(ApiLabel(label, RepositoryName(repository)))
-    } getOrElse NotFound()
-  })
-
   ajaxGet("/:owner/:repository/issues/labels/new")(collaboratorsOnly { repository =>
     html.edit(None, repository)
   })
@@ -66,31 +45,6 @@ trait LabelsControllerBase extends ControllerBase {
       hasWritePermission(repository.owner, repository.name, context.loginAccount))
   })
 
-  /**
-    * Create a label
-    * https://developer.github.com/v3/issues/labels/#create-a-label
-    */
-  post("/api/v3/repos/:owner/:repository/labels")(collaboratorsOnly { repository =>
-    (for{
-      data <- extractFromJsonBody[CreateALabel] if data.isValid
-    } yield {
-      LockUtil.lock(RepositoryName(repository).fullName) {
-        if (getLabel(repository.owner, repository.name, data.name).isEmpty) {
-          val labelId = createLabel(repository.owner, repository.name, data.name, data.color)
-          getLabel(repository.owner, repository.name, labelId).map { label =>
-            Created(JsonFormat(ApiLabel(label, RepositoryName(repository))))
-          } getOrElse NotFound()
-        } else {
-          // TODO ApiError should support errors field to enhance compatibility of GitHub API
-          UnprocessableEntity(ApiError(
-            "Validation Failed",
-            Some("https://developer.github.com/v3/issues/labels/#create-a-label")
-          ))
-        }
-      }
-    }) getOrElse NotFound()
-  })
-
   ajaxGet("/:owner/:repository/issues/labels/:labelId/edit")(collaboratorsOnly { repository =>
     getLabel(repository.owner, repository.name, params("labelId").toInt).map { label =>
       html.edit(Some(label), repository)
@@ -107,50 +61,11 @@ trait LabelsControllerBase extends ControllerBase {
       hasWritePermission(repository.owner, repository.name, context.loginAccount))
   })
 
-  /**
-    * Update a label
-    * https://developer.github.com/v3/issues/labels/#update-a-label
-    */
-  patch("/api/v3/repos/:owner/:repository/labels/:labelName")(collaboratorsOnly { repository =>
-    (for{
-      data <- extractFromJsonBody[CreateALabel] if data.isValid
-    } yield {
-      LockUtil.lock(RepositoryName(repository).fullName) {
-        getLabel(repository.owner, repository.name, params("labelName")).map { label =>
-          if (getLabel(repository.owner, repository.name, data.name).isEmpty) {
-            updateLabel(repository.owner, repository.name, label.labelId, data.name, data.color)
-            JsonFormat(ApiLabel(
-              getLabel(repository.owner, repository.name, label.labelId).get,
-              RepositoryName(repository)))
-          } else {
-            // TODO ApiError should support errors field to enhance compatibility of GitHub API
-            UnprocessableEntity(ApiError(
-              "Validation Failed",
-              Some("https://developer.github.com/v3/issues/labels/#create-a-label")))
-          }
-        } getOrElse NotFound()
-      }
-    }) getOrElse NotFound()
-  })
-
   ajaxPost("/:owner/:repository/issues/labels/:labelId/delete")(collaboratorsOnly { repository =>
     deleteLabel(repository.owner, repository.name, params("labelId").toInt)
     Ok()
   })
 
-  /**
-    * Delete a label
-    * https://developer.github.com/v3/issues/labels/#delete-a-label
-    */
-  delete("/api/v3/repos/:owner/:repository/labels/:labelName")(collaboratorsOnly { repository =>
-    LockUtil.lock(RepositoryName(repository).fullName) {
-      getLabel(repository.owner, repository.name, params("labelName")).map { label =>
-        deleteLabel(repository.owner, repository.name, label.labelId)
-        NoContent()
-      } getOrElse NotFound()
-    }
-  })
-
   /**
    * Constraint for the identifier such as user name, repository name or page name.
    */

src/main/scala/gitbucket/core/controller/PluginsController.scala

@@ -1,11 +0,0 @@
-package gitbucket.core.controller
-
-import gitbucket.core.admin.plugins.html
-import gitbucket.core.plugin.PluginRegistry
-import gitbucket.core.util.AdminAuthenticator
-
-class PluginsController extends ControllerBase with AdminAuthenticator {
-  get("/admin/plugins")(adminOnly {
-    html.plugins(PluginRegistry().getPlugins())
-  })
-}

src/main/scala/gitbucket/core/controller/PullRequestsController.scala

@@ -1,7 +1,6 @@
 package gitbucket.core.controller
 
-import gitbucket.core.api._
-import gitbucket.core.model.{Account, CommitStatus, CommitState, Repository, PullRequest, Issue, WebHook}
+import gitbucket.core.model.WebHook
 import gitbucket.core.pulls.html
 import gitbucket.core.service.CommitStatusService
 import gitbucket.core.service.MergeService
@@ -82,24 +81,6 @@ trait PullRequestsControllerBase extends ControllerBase {
     }
   })
 
-  /**
-   * https://developer.github.com/v3/pulls/#list-pull-requests
-   */
-  get("/api/v3/repos/:owner/:repository/pulls")(referrersOnly { repository =>
-    val page       = IssueSearchCondition.page(request)
-    // TODO: more api spec condition
-    val condition = IssueSearchCondition(request)
-    val baseOwner = getAccountByUserName(repository.owner).get
-    val issues:List[(Issue, Account, Int, PullRequest, Repository, Account)] = searchPullRequestByApi(condition, (page - 1) * PullRequestLimit, PullRequestLimit, repository.owner -> repository.name)
-    JsonFormat(issues.map{case (issue, issueUser, commentCount, pullRequest, headRepo, headOwner) =>
-      ApiPullRequest(
-        issue,
-        pullRequest,
-        ApiRepository(headRepo, ApiUser(headOwner)),
-        ApiRepository(repository, ApiUser(baseOwner)),
-        ApiUser(issueUser)) })
-  })
-
   get("/:owner/:repository/pull/:id")(referrersOnly { repository =>
     params("id").toIntOpt.flatMap{ issueId =>
       val owner = repository.owner
@@ -113,7 +94,7 @@ trait PullRequestsControllerBase extends ControllerBase {
             (commits.flatten.map(commit => getCommitComments(owner, name, commit.id, true)).flatten.toList ::: getComments(owner, name, issueId))
               .sortWith((a, b) => a.registeredDate before b.registeredDate),
             getIssueLabels(owner, name, issueId),
-            (getCollaborators(owner, name) ::: (if(getAccountByUserName(owner).get.isGroupAccount) Nil else List(owner))).sorted,
+            (getCollaborators(owner, name) ::: (if(getAccountByUserName(owner).get.groupAccount) Nil else List(owner))).sorted,
             getMilestonesWithIssueCount(owner, name),
             getLabels(owner, name),
             commits,
@@ -126,47 +107,6 @@ trait PullRequestsControllerBase extends ControllerBase {
     } getOrElse NotFound
   })
 
-  /**
-   * https://developer.github.com/v3/pulls/#get-a-single-pull-request
-   */
-  get("/api/v3/repos/:owner/:repository/pulls/:id")(referrersOnly { repository =>
-    (for{
-      issueId <- params("id").toIntOpt
-      (issue, pullRequest) <- getPullRequest(repository.owner, repository.name, issueId)
-      users = getAccountsByUserNames(Set(repository.owner, pullRequest.requestUserName, issue.openedUserName), Set())
-      baseOwner <- users.get(repository.owner)
-      headOwner <- users.get(pullRequest.requestUserName)
-      issueUser <- users.get(issue.openedUserName)
-      headRepo  <- getRepository(pullRequest.requestUserName, pullRequest.requestRepositoryName, baseUrl)
-    } yield {
-      JsonFormat(ApiPullRequest(
-        issue,
-        pullRequest,
-        ApiRepository(headRepo, ApiUser(headOwner)),
-        ApiRepository(repository, ApiUser(baseOwner)),
-        ApiUser(issueUser)))
-    }).getOrElse(NotFound)
-  })
-
-  /**
-   * https://developer.github.com/v3/pulls/#list-commits-on-a-pull-request
-   */
-  get("/api/v3/repos/:owner/:repository/pulls/:id/commits")(referrersOnly { repository =>
-    val owner = repository.owner
-    val name = repository.name
-    params("id").toIntOpt.flatMap{ issueId =>
-      getPullRequest(owner, name, issueId) map { case(issue, pullreq) =>
-        using(Git.open(getRepositoryDir(owner, name))){ git =>
-          val oldId = git.getRepository.resolve(pullreq.commitIdFrom)
-          val newId = git.getRepository.resolve(pullreq.commitIdTo)
-          val repoFullName = RepositoryName(repository)
-          val commits = git.log.addRange(oldId, newId).call.iterator.asScala.map(c => ApiCommitListItem(new CommitInfo(c), repoFullName)).toList
-          JsonFormat(commits)
-        }
-      }
-    } getOrElse NotFound
-  })
-
   ajaxGet("/:owner/:repository/pull/:id/mergeguide")(referrersOnly { repository =>
     params("id").toIntOpt.flatMap{ issueId =>
       val owner = repository.owner
@@ -196,7 +136,7 @@ trait PullRequestsControllerBase extends ControllerBase {
           issue,
           pullreq,
           repository,
-          getRepository(pullreq.requestUserName, pullreq.requestRepositoryName, context.baseUrl).get)
+          getRepository(pullreq.requestUserName, pullreq.requestRepositoryName).get)
       }
     } getOrElse NotFound
   })
@@ -229,7 +169,7 @@ trait PullRequestsControllerBase extends ControllerBase {
       if(branchProtection.needStatusCheck(loginAccount.userName)){
         flash += "error" -> s"branch ${pullreq.requestBranch} is protected need status check."
       } else {
-        val repository = getRepository(owner, name, context.baseUrl).get
+        val repository = getRepository(owner, name).get
         LockUtil.lock(s"${owner}/${name}"){
           val alias = if(pullreq.repositoryName == pullreq.requestRepositoryName && pullreq.userName == pullreq.requestUserName){
             pullreq.branch
@@ -310,7 +250,7 @@ trait PullRequestsControllerBase extends ControllerBase {
               pullreq.requestUserName, pullreq.requestRepositoryName, pullreq.commitIdTo)
 
             // close issue by content of pull request
-            val defaultBranch = getRepository(owner, name, context.baseUrl).get.repository.defaultBranch
+            val defaultBranch = getRepository(owner, name).get.repository.defaultBranch
             if(pullreq.branch == defaultBranch){
               commits.flatten.foreach { commit =>
                 closeIssuesFromMessage(commit.fullMessage, loginAccount.userName, owner, name)
@@ -343,7 +283,7 @@ trait PullRequestsControllerBase extends ControllerBase {
     val headBranch:Option[String] = params.get("head")
     (forkedRepository.repository.originUserName, forkedRepository.repository.originRepositoryName) match {
       case (Some(originUserName), Some(originRepositoryName)) => {
-        getRepository(originUserName, originRepositoryName, context.baseUrl).map { originRepository =>
+        getRepository(originUserName, originRepositoryName).map { originRepository =>
           using(
             Git.open(getRepositoryDir(originUserName, originRepositoryName)),
             Git.open(getRepositoryDir(forkedRepository.owner, forkedRepository.name))
@@ -384,12 +324,12 @@ trait PullRequestsControllerBase extends ControllerBase {
         forkedRepository.repository.originRepositoryName
       } else {
         // Sibling repository
-        getUserRepositories(originOwner, context.baseUrl).find { x =>
+        getUserRepositories(originOwner).find { x =>
           x.repository.originUserName == forkedRepository.repository.originUserName &&
             x.repository.originRepositoryName == forkedRepository.repository.originRepositoryName
         }.map(_.repository.repositoryName)
       };
-      originRepository <- getRepository(originOwner, originRepositoryName, context.baseUrl)
+      originRepository <- getRepository(originOwner, originRepositoryName)
     ) yield {
       using(
         Git.open(getRepositoryDir(originRepository.owner, originRepository.name)),
@@ -430,7 +370,7 @@ trait PullRequestsControllerBase extends ControllerBase {
               originRepository,
               forkedRepository,
               hasWritePermission(originRepository.owner, originRepository.name, context.loginAccount),
-              (getCollaborators(originRepository.owner, originRepository.name) ::: (if(getAccountByUserName(originRepository.owner).get.isGroupAccount) Nil else List(originRepository.owner))).sorted,
+              (getCollaborators(originRepository.owner, originRepository.name) ::: (if(getAccountByUserName(originRepository.owner).get.groupAccount) Nil else List(originRepository.owner))).sorted,
               getMilestones(originRepository.owner, originRepository.name),
               getLabels(originRepository.owner, originRepository.name)
             )
@@ -457,7 +397,7 @@ trait PullRequestsControllerBase extends ControllerBase {
           getForkedRepositories(forkedRepository.owner, forkedRepository.name).find(_._1 == originOwner).map(_._2)
         }
       };
-      originRepository <- getRepository(originOwner, originRepositoryName, context.baseUrl)
+      originRepository <- getRepository(originOwner, originRepositoryName)
     ) yield {
       using(
         Git.open(getRepositoryDir(originRepository.owner, originRepository.name)),
@@ -523,7 +463,7 @@ trait PullRequestsControllerBase extends ControllerBase {
 
       getIssue(owner, name, issueId.toString) foreach { issue =>
         // extract references and create refer comment
-        createReferComment(owner, name, issue, form.title + " " + form.content.getOrElse(""))
+        createReferComment(owner, name, issue, form.title + " " + form.content.getOrElse(""), context.loginAccount.get)
 
         // notifications
         Notifier().toNotify(repository, issue, form.content.getOrElse("")){
@@ -535,19 +475,6 @@ trait PullRequestsControllerBase extends ControllerBase {
     }
   })
 
-  // TODO Same method exists in IssueController. Should it moved to IssueService?
-  private def createReferComment(owner: String, repository: String, fromIssue: Issue, message: String) = {
-    StringUtil.extractIssueId(message).foreach { issueId =>
-      val content = fromIssue.issueId + ":" + fromIssue.title
-      if(getIssue(owner, repository, issueId).isDefined){
-        // Not add if refer comment already exist.
-        if(!getComments(owner, repository, issueId.toInt).exists { x => x.action == "refer" && x.content == content }) {
-          createComment(owner, repository, context.loginAccount.get.userName, issueId.toInt, content, "refer")
-        }
-      }
-    }
-  }
-
   /**
    * Parses branch identifier and extracts owner and branch name as tuple.
    *
@@ -597,7 +524,7 @@ trait PullRequestsControllerBase extends ControllerBase {
         "pulls",
         searchIssue(condition, true, (page - 1) * PullRequestLimit, PullRequestLimit, owner -> repoName),
         page,
-        if(!getAccountByUserName(owner).exists(_.isGroupAccount)){
+        if(!getAccountByUserName(owner).exists(_.groupAccount)){
           (getCollaborators(owner, repoName) :+ owner).sorted
         } else {
           getCollaborators(owner, repoName)
@@ -611,14 +538,4 @@ trait PullRequestsControllerBase extends ControllerBase {
         hasWritePermission(owner, repoName, context.loginAccount))
     }
 
-  // TODO: same as gitbucket.core.servlet.CommitLogHook ...
-  private def createIssueComment(owner: String, repository: String, commit: CommitInfo) = {
-    StringUtil.extractIssueId(commit.fullMessage).foreach { issueId =>
-      if(getIssue(owner, repository, issueId).isDefined){
-        getAccountByMailAddress(commit.committerEmailAddress).foreach { account =>
-          createComment(owner, repository, account.userName, issueId.toInt, commit.fullMessage + " " + commit.id, "commit")
-        }
-      }
-    }
-  }
 }

src/main/scala/gitbucket/core/controller/RepositorySettingsController.scala

@@ -49,11 +49,12 @@ trait RepositorySettingsControllerBase extends ControllerBase {
   )(CollaboratorForm.apply)
 
   // for web hook url addition
-  case class WebHookForm(url: String, events: Set[WebHook.Event])
+  case class WebHookForm(url: String, events: Set[WebHook.Event], token: Option[String])
 
   def webHookForm(update:Boolean) = mapping(
     "url"    -> trim(label("url", text(required, webHook(update)))),
-    "events" -> webhookEvents
+    "events" -> webhookEvents,
+    "token" -> optional(trim(label("token", text(maxlength(100)))))
   )(WebHookForm.apply)
 
   // for transfer ownership
@@ -86,7 +87,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
       repository.name,
       form.description,
       repository.repository.parentUserName.map { _ =>
-        repository.repository.isPrivate
+        repository.repository.`private`
       } getOrElse form.isPrivate
     )
     // Change repository name
@@ -141,29 +142,13 @@ trait RepositorySettingsControllerBase extends ControllerBase {
     }
   })
 
-  /** https://developer.github.com/v3/repos/#enabling-and-disabling-branch-protection */
-  patch("/api/v3/repos/:owner/:repo/branches/:branch")(ownerOnly { repository =>
-    import gitbucket.core.api._
-    (for{
-      branch <- params.get("branch") if repository.branchList.find(_ == branch).isDefined
-      protection <- extractFromJsonBody[ApiBranchProtection.EnablingAndDisabling].map(_.protection)
-    } yield {
-      if(protection.enabled){
-        enableBranchProtection(repository.owner, repository.name, branch, protection.status.enforcement_level == ApiBranchProtection.Everyone, protection.status.contexts)
-      } else {
-        disableBranchProtection(repository.owner, repository.name, branch)
-      }
-      JsonFormat(ApiBranch(branch, protection)(RepositoryName(repository)))
-    }) getOrElse NotFound
-  })
-
   /**
    * Display the Collaborators page.
    */
   get("/:owner/:repository/settings/collaborators")(ownerOnly { repository =>
     html.collaborators(
       getCollaborators(repository.owner, repository.name),
-      getAccountByUserName(repository.owner).get.isGroupAccount,
+      getAccountByUserName(repository.owner).get.groupAccount,
       repository)
   })
 
@@ -171,7 +156,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
    * Add the collaborator.
    */
   post("/:owner/:repository/settings/collaborators/add", collaboratorForm)(ownerOnly { (form, repository) =>
-    if(!getAccountByUserName(repository.owner).get.isGroupAccount){
+    if(!getAccountByUserName(repository.owner).get.groupAccount){
       addCollaborator(repository.owner, repository.name, form.userName)
     }
     redirect(s"/${repository.owner}/${repository.name}/settings/collaborators")
@@ -181,7 +166,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
    * Add the collaborator.
    */
   get("/:owner/:repository/settings/collaborators/remove")(ownerOnly { repository =>
-    if(!getAccountByUserName(repository.owner).get.isGroupAccount){
+    if(!getAccountByUserName(repository.owner).get.groupAccount){
       removeCollaborator(repository.owner, repository.name, params("name"))
     }
     redirect(s"/${repository.owner}/${repository.name}/settings/collaborators")
@@ -198,7 +183,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
    * Display the web hook edit page.
    */
   get("/:owner/:repository/settings/hooks/new")(ownerOnly { repository =>
-    val webhook = WebHook(repository.owner, repository.name, "")
+    val webhook = WebHook(repository.owner, repository.name, "", None)
     html.edithooks(webhook, Set(WebHook.Push), repository, flash.get("info"), true)
   })
 
@@ -206,7 +191,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
    * Add the web hook URL.
    */
   post("/:owner/:repository/settings/hooks/new", webHookForm(false))(ownerOnly { (form, repository) =>
-    addWebHook(repository.owner, repository.name, form.url, form.events)
+    addWebHook(repository.owner, repository.name, form.url, form.events, form.token)
     flash += "info" -> s"Webhook ${form.url} created"
     redirect(s"/${repository.owner}/${repository.name}/settings/hooks")
   })
@@ -235,7 +220,8 @@ trait RepositorySettingsControllerBase extends ControllerBase {
       import scala.concurrent.ExecutionContext.Implicits.global
 
       val url = params("url")
-      val dummyWebHookInfo = WebHook(repository.owner, repository.name, url)
+      val token = Some(params("token"))
+      val dummyWebHookInfo = WebHook(repository.owner, repository.name, url, token)
       val dummyPayload = {
         val ownerAccount = getAccountByUserName(repository.owner).get
         val commits = if(repository.commitCount == 0) List.empty else git.log
@@ -294,7 +280,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
    * Update web hook settings.
    */
   post("/:owner/:repository/settings/hooks/edit", webHookForm(true))(ownerOnly { (form, repository) =>
-    updateWebHook(repository.owner, repository.name, form.url, form.events)
+    updateWebHook(repository.owner, repository.name, form.url, form.events, form.token)
     flash += "info" -> s"webhook ${form.url} updated"
     redirect(s"/${repository.owner}/${repository.name}/settings/hooks")
   })
@@ -378,7 +364,7 @@ trait RepositorySettingsControllerBase extends ControllerBase {
     override def validate(name: String, value: String, messages: Messages): Option[String] =
       getAccountByUserName(value) match {
         case None => Some("User does not exist.")
-        case Some(x) if(x.isGroupAccount)
+        case Some(x) if(x.groupAccount)
                   => Some("User does not exist.")
         case Some(x) if(x.userName == params("owner") || getCollaborators(params("owner"), params("repository")).contains(x.userName))
                   => Some("User can access this repository already.")

src/main/scala/gitbucket/core/controller/RepositoryViewerController.scala

@@ -2,7 +2,6 @@ package gitbucket.core.controller
 
 import javax.servlet.http.{HttpServletResponse, HttpServletRequest}
 
-import gitbucket.core.api._
 import gitbucket.core.plugin.PluginRegistry
 import gitbucket.core.repo.html
 import gitbucket.core.helper
@@ -13,7 +12,7 @@ import gitbucket.core.util.StringUtil._
 import gitbucket.core.util.ControlUtil._
 import gitbucket.core.util.Implicits._
 import gitbucket.core.util.Directory._
-import gitbucket.core.model.{Account, CommitState, WebHook}
+import gitbucket.core.model.{Account, WebHook}
 import gitbucket.core.service.WebHookService._
 import gitbucket.core.view
 import gitbucket.core.view.helpers
@@ -122,13 +121,6 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     fileList(_)
   })
 
-  /**
-   * https://developer.github.com/v3/repos/#get
-   */
-  get("/api/v3/repos/:owner/:repository")(referrersOnly { repository =>
-    JsonFormat(ApiRepository(repository, ApiUser(getAccountByUserName(repository.owner).get)))
-  })
-
   /**
    * Displays the file list of the specified path and branch.
    */
@@ -160,65 +152,6 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     }
   })
 
-  /**
-   * https://developer.github.com/v3/repos/statuses/#create-a-status
-   */
-  post("/api/v3/repos/:owner/:repo/statuses/:sha")(collaboratorsOnly { repository =>
-    (for{
-      ref <- params.get("sha")
-      sha <- JGitUtil.getShaByRef(repository.owner, repository.name, ref)
-      data <- extractFromJsonBody[CreateAStatus] if data.isValid
-      creator <- context.loginAccount
-      state <- CommitState.valueOf(data.state)
-      statusId = createCommitStatus(repository.owner, repository.name, sha, data.context.getOrElse("default"),
-                                    state, data.target_url, data.description, new java.util.Date(), creator)
-      status <- getCommitStatus(repository.owner, repository.name, statusId)
-    } yield {
-      JsonFormat(ApiCommitStatus(status, ApiUser(creator)))
-    }) getOrElse NotFound
-  })
-
-  /**
-   * https://developer.github.com/v3/repos/statuses/#list-statuses-for-a-specific-ref
-   *
-   * ref is Ref to list the statuses from. It can be a SHA, a branch name, or a tag name.
-   */
-  val listStatusesRoute = get("/api/v3/repos/:owner/:repo/commits/:ref/statuses")(referrersOnly { repository =>
-    (for{
-      ref <- params.get("ref")
-      sha <- JGitUtil.getShaByRef(repository.owner, repository.name, ref)
-    } yield {
-      JsonFormat(getCommitStatuesWithCreator(repository.owner, repository.name, sha).map{ case(status, creator) =>
-        ApiCommitStatus(status, ApiUser(creator))
-      })
-    }) getOrElse NotFound
-  })
-
-  /**
-   * https://developer.github.com/v3/repos/statuses/#list-statuses-for-a-specific-ref
-   *
-   * legacy route
-   */
-  get("/api/v3/repos/:owner/:repo/statuses/:ref"){
-    listStatusesRoute.action()
-  }
-
-  /**
-   * https://developer.github.com/v3/repos/statuses/#get-the-combined-status-for-a-specific-ref
-   *
-   * ref is Ref to list the statuses from. It can be a SHA, a branch name, or a tag name.
-   */
-  get("/api/v3/repos/:owner/:repo/commits/:ref/status")(referrersOnly { repository =>
-    (for{
-      ref <- params.get("ref")
-      owner <- getAccountByUserName(repository.owner)
-      sha <- JGitUtil.getShaByRef(repository.owner, repository.name, ref)
-    } yield {
-      val statuses = getCommitStatuesWithCreator(repository.owner, repository.name, sha)
-      JsonFormat(ApiCombinedCommitStatus(sha, statuses, ApiRepository(repository, owner)))
-    }) getOrElse NotFound
-  })
-
   get("/:owner/:repository/new/*")(collaboratorsOnly { repository =>
     val (branch, path) = splitPath(repository, multiParams("splat").head)
     val protectedBranch = getProtectedBranchInfo(repository.owner, repository.name, branch).needStatusCheck(context.loginAccount.get.userName)
@@ -560,8 +493,7 @@ trait RepositoryViewerControllerBase extends ControllerBase {
     html.forked(
       getRepository(
         repository.repository.originUserName.getOrElse(repository.owner),
-        repository.repository.originRepositoryName.getOrElse(repository.name),
-        context.baseUrl),
+        repository.repository.originRepositoryName.getOrElse(repository.name)),
       getForkedRepositories(
         repository.repository.originUserName.getOrElse(repository.owner),
         repository.repository.originRepositoryName.getOrElse(repository.name)),
@@ -759,8 +691,6 @@ trait RepositoryViewerControllerBase extends ControllerBase {
          .setTree(revCommit.getTree)
          .setOutputStream(response.getOutputStream)
          .call()
-
-      Unit
     }
   }
 

src/main/scala/gitbucket/core/controller/SearchController.scala

@@ -1,51 +0,0 @@
-package gitbucket.core.controller
-
-import gitbucket.core.search.html
-import gitbucket.core.service._
-import gitbucket.core.util.{StringUtil, ControlUtil, ReferrerAuthenticator, Implicits}
-import ControlUtil._
-import Implicits._
-import io.github.gitbucket.scalatra.forms._
-
-class SearchController extends SearchControllerBase
-  with RepositoryService with AccountService with ActivityService with RepositorySearchService with IssuesService with ReferrerAuthenticator
-
-trait SearchControllerBase extends ControllerBase { self: RepositoryService
-  with ActivityService with RepositorySearchService with ReferrerAuthenticator =>
-
-  val searchForm = mapping(
-    "query"      -> trim(text(required)),
-    "owner"      -> trim(text(required)),
-    "repository" -> trim(text(required))
-  )(SearchForm.apply)
-
-  case class SearchForm(query: String, owner: String, repository: String)
-
-  post("/search", searchForm){ form =>
-    redirect(s"/${form.owner}/${form.repository}/search?q=${StringUtil.urlEncode(form.query)}")
-  }
-
-  get("/:owner/:repository/search")(referrersOnly { repository =>
-    defining(params("q").trim, params.getOrElse("type", "code")){ case (query, target) =>
-      val page   = try {
-        val i = params.getOrElse("page", "1").toInt
-        if(i <= 0) 1 else i
-      } catch {
-        case e: NumberFormatException => 1
-      }
-
-      target.toLowerCase match {
-        case "issue" => html.issues(
-          searchIssues(repository.owner, repository.name, query),
-          countFiles(repository.owner, repository.name, query),
-          query, page, repository)
-
-        case _ => html.code(
-          searchFiles(repository.owner, repository.name, query),
-          countIssues(repository.owner, repository.name, query),
-          query, page, repository)
-      }
-    }
-  })
-
-}

src/main/scala/gitbucket/core/controller/SystemSettingsController.scala

@@ -1,17 +1,24 @@
 package gitbucket.core.controller
 
 import gitbucket.core.admin.html
-import gitbucket.core.service.{AccountService, SystemSettingsService}
+import gitbucket.core.service.{AccountService, SystemSettingsService, RepositoryService}
 import gitbucket.core.util.AdminAuthenticator
 import gitbucket.core.ssh.SshServer
+import gitbucket.core.plugin.PluginRegistry
 import SystemSettingsService._
+import gitbucket.core.util.Implicits._
+import gitbucket.core.util.ControlUtil._
+import gitbucket.core.util.Directory._
+import gitbucket.core.util.StringUtil._
 import io.github.gitbucket.scalatra.forms._
+import org.apache.commons.io.FileUtils
+import org.scalatra.i18n.Messages
 
 class SystemSettingsController extends SystemSettingsControllerBase
-  with AccountService with AdminAuthenticator
+  with AccountService with RepositoryService with AdminAuthenticator
 
-trait SystemSettingsControllerBase extends ControllerBase {
-  self: AccountService with AdminAuthenticator =>
+trait SystemSettingsControllerBase extends AccountManagementControllerBase {
+  self: AccountService with RepositoryService with AdminAuthenticator =>
 
   private val form = mapping(
     "baseUrl"                  -> trim(label("Base URL", optional(text()))),
@@ -23,6 +30,7 @@ trait SystemSettingsControllerBase extends ControllerBase {
     "notification"             -> trim(label("Notification", boolean())),
     "activityLogLimit"         -> trim(label("Limit of activity logs", optional(number()))),
     "ssh"                      -> trim(label("SSH access", boolean())),
+    "sshHost"                  -> trim(label("SSH host", optional(text()))),
     "sshPort"                  -> trim(label("SSH port", optional(number()))),
     "useSMTP"                  -> trim(label("SMTP", boolean())),
     "smtp"                     -> optionalIfNotChecked("useSMTP", mapping(
@@ -50,9 +58,14 @@ trait SystemSettingsControllerBase extends ControllerBase {
         "keystore"                 -> trim(label("Keystore", optional(text())))
     )(Ldap.apply))
   )(SystemSettings.apply).verifying { settings =>
-    if(settings.ssh && settings.baseUrl.isEmpty){
-      Seq("baseUrl" -> "Base URL is required if SSH access is enabled.")
-    } else Nil
+    Vector(
+      if(settings.ssh && settings.baseUrl.isEmpty){
+        Some("baseUrl" -> "Base URL is required if SSH access is enabled.")
+      } else None,
+      if(settings.ssh && settings.sshHost.isEmpty){
+        Some("sshHost" -> "SSH host is required if SSH access is enabled.")
+      } else None
+    ).flatten
   }
 
   private val pluginForm = mapping(
@@ -61,6 +74,61 @@ trait SystemSettingsControllerBase extends ControllerBase {
 
   case class PluginForm(pluginIds: List[String])
 
+
+  case class NewUserForm(userName: String, password: String, fullName: String,
+                         mailAddress: String, isAdmin: Boolean,
+                         url: Option[String], fileId: Option[String])
+
+  case class EditUserForm(userName: String, password: Option[String], fullName: String,
+                          mailAddress: String, isAdmin: Boolean, url: Option[String],
+                          fileId: Option[String], clearImage: Boolean, isRemoved: Boolean)
+
+  case class NewGroupForm(groupName: String, url: Option[String], fileId: Option[String],
+                          members: String)
+
+  case class EditGroupForm(groupName: String, url: Option[String], fileId: Option[String],
+                           members: String, clearImage: Boolean, isRemoved: Boolean)
+
+
+  val newUserForm = mapping(
+    "userName"    -> trim(label("Username"     ,text(required, maxlength(100), identifier, uniqueUserName))),
+    "password"    -> trim(label("Password"     ,text(required, maxlength(20)))),
+    "fullName"    -> trim(label("Full Name"    ,text(required, maxlength(100)))),
+    "mailAddress" -> trim(label("Mail Address" ,text(required, maxlength(100), uniqueMailAddress()))),
+    "isAdmin"     -> trim(label("User Type"    ,boolean())),
+    "url"         -> trim(label("URL"          ,optional(text(maxlength(200))))),
+    "fileId"      -> trim(label("File ID"      ,optional(text())))
+  )(NewUserForm.apply)
+
+  val editUserForm = mapping(
+    "userName"    -> trim(label("Username"     ,text(required, maxlength(100), identifier))),
+    "password"    -> trim(label("Password"     ,optional(text(maxlength(20))))),
+    "fullName"    -> trim(label("Full Name"    ,text(required, maxlength(100)))),
+    "mailAddress" -> trim(label("Mail Address" ,text(required, maxlength(100), uniqueMailAddress("userName")))),
+    "isAdmin"     -> trim(label("User Type"    ,boolean())),
+    "url"         -> trim(label("URL"          ,optional(text(maxlength(200))))),
+    "fileId"      -> trim(label("File ID"      ,optional(text()))),
+    "clearImage"  -> trim(label("Clear image"  ,boolean())),
+    "removed"     -> trim(label("Disable"      ,boolean(disableByNotYourself("userName"))))
+  )(EditUserForm.apply)
+
+  val newGroupForm = mapping(
+    "groupName" -> trim(label("Group name" ,text(required, maxlength(100), identifier, uniqueUserName))),
+    "url"       -> trim(label("URL"        ,optional(text(maxlength(200))))),
+    "fileId"    -> trim(label("File ID"    ,optional(text()))),
+    "members"   -> trim(label("Members"    ,text(required, members)))
+  )(NewGroupForm.apply)
+
+  val editGroupForm = mapping(
+    "groupName"  -> trim(label("Group name"  ,text(required, maxlength(100), identifier))),
+    "url"        -> trim(label("URL"         ,optional(text(maxlength(200))))),
+    "fileId"     -> trim(label("File ID"     ,optional(text()))),
+    "members"    -> trim(label("Members"     ,text(required, members))),
+    "clearImage" -> trim(label("Clear image" ,boolean())),
+    "removed"    -> trim(label("Disable"     ,boolean()))
+  )(EditGroupForm.apply)
+
+
   get("/admin/system")(adminOnly {
     html.system(flash.get("info"))
   })
@@ -68,20 +136,155 @@ trait SystemSettingsControllerBase extends ControllerBase {
   post("/admin/system", form)(adminOnly { form =>
     saveSystemSettings(form)
 
-    if(form.ssh && SshServer.isActive && context.settings.sshPort != form.sshPort){
-      SshServer.stop()
-    }
-
-    if(form.ssh && !SshServer.isActive && form.baseUrl.isDefined){
-      SshServer.start(
-        form.sshPort.getOrElse(SystemSettingsService.DefaultSshPort),
-        form.baseUrl.get)
-    } else if(!form.ssh && SshServer.isActive){
+    if (form.sshAddress != context.settings.sshAddress) {
       SshServer.stop()
+       for {
+         sshAddress <- form.sshAddress
+         baseUrl    <- form.baseUrl
+       }
+       SshServer.start(sshAddress, baseUrl)
     }
 
     flash += "info" -> "System settings has been updated."
     redirect("/admin/system")
   })
 
+  get("/admin/plugins")(adminOnly {
+    html.plugins(PluginRegistry().getPlugins())
+  })
+
+
+  get("/admin/users")(adminOnly {
+    val includeRemoved = params.get("includeRemoved").map(_.toBoolean).getOrElse(false)
+    val users          = getAllUsers(includeRemoved)
+    val members        = users.collect { case account if(account.groupAccount) =>
+      account.userName -> getGroupMembers(account.userName).map(_.userName)
+    }.toMap
+
+    html.userlist(users, members, includeRemoved)
+  })
+
+  get("/admin/users/_newuser")(adminOnly {
+    html.user(None)
+  })
+
+  post("/admin/users/_newuser", newUserForm)(adminOnly { form =>
+    createAccount(form.userName, sha1(form.password), form.fullName, form.mailAddress, form.isAdmin, form.url)
+    updateImage(form.userName, form.fileId, false)
+    redirect("/admin/users")
+  })
+
+  get("/admin/users/:userName/_edituser")(adminOnly {
+    val userName = params("userName")
+    html.user(getAccountByUserName(userName, true))
+  })
+
+  post("/admin/users/:name/_edituser", editUserForm)(adminOnly { form =>
+    val userName = params("userName")
+    getAccountByUserName(userName, true).map { account =>
+
+      if(form.isRemoved){
+        // Remove repositories
+        //        getRepositoryNamesOfUser(userName).foreach { repositoryName =>
+        //          deleteRepository(userName, repositoryName)
+        //          FileUtils.deleteDirectory(getRepositoryDir(userName, repositoryName))
+        //          FileUtils.deleteDirectory(getWikiRepositoryDir(userName, repositoryName))
+        //          FileUtils.deleteDirectory(getTemporaryDir(userName, repositoryName))
+        //        }
+        // Remove from GROUP_MEMBER, COLLABORATOR and REPOSITORY
+        removeUserRelatedData(userName)
+      }
+
+      updateAccount(account.copy(
+        password      = form.password.map(sha1).getOrElse(account.password),
+        fullName      = form.fullName,
+        mailAddress   = form.mailAddress,
+        administrator = form.isAdmin,
+        url           = form.url,
+        removed       = form.isRemoved))
+
+      updateImage(userName, form.fileId, form.clearImage)
+      redirect("/admin/users")
+
+    } getOrElse NotFound
+  })
+
+  get("/admin/users/_newgroup")(adminOnly {
+    html.usergroup(None, Nil)
+  })
+
+  post("/admin/users/_newgroup", newGroupForm)(adminOnly { form =>
+    createGroup(form.groupName, form.url)
+    updateGroupMembers(form.groupName, form.members.split(",").map {
+      _.split(":") match {
+        case Array(userName, isManager) => (userName, isManager.toBoolean)
+      }
+    }.toList)
+    updateImage(form.groupName, form.fileId, false)
+    redirect("/admin/users")
+  })
+
+  get("/admin/users/:groupName/_editgroup")(adminOnly {
+    defining(params("groupName")){ groupName =>
+      html.usergroup(getAccountByUserName(groupName, true), getGroupMembers(groupName))
+    }
+  })
+
+  post("/admin/users/:groupName/_editgroup", editGroupForm)(adminOnly { form =>
+    defining(params("groupName"), form.members.split(",").map {
+      _.split(":") match {
+        case Array(userName, isManager) => (userName, isManager.toBoolean)
+      }
+    }.toList){ case (groupName, members) =>
+      getAccountByUserName(groupName, true).map { account =>
+        updateGroup(groupName, form.url, form.isRemoved)
+
+        if(form.isRemoved){
+          // Remove from GROUP_MEMBER
+          updateGroupMembers(form.groupName, Nil)
+          // Remove repositories
+          getRepositoryNamesOfUser(form.groupName).foreach { repositoryName =>
+            deleteRepository(groupName, repositoryName)
+            FileUtils.deleteDirectory(getRepositoryDir(groupName, repositoryName))
+            FileUtils.deleteDirectory(getWikiRepositoryDir(groupName, repositoryName))
+            FileUtils.deleteDirectory(getTemporaryDir(groupName, repositoryName))
+          }
+        } else {
+          // Update GROUP_MEMBER
+          updateGroupMembers(form.groupName, members)
+          // Update COLLABORATOR for group repositories
+          getRepositoryNamesOfUser(form.groupName).foreach { repositoryName =>
+            removeCollaborators(form.groupName, repositoryName)
+            members.foreach { case (userName, isManager) =>
+              addCollaborator(form.groupName, repositoryName, userName)
+            }
+          }
+        }
+
+        updateImage(form.groupName, form.fileId, form.clearImage)
+        redirect("/admin/users")
+
+      } getOrElse NotFound
+    }
+  })
+
+  private def members: Constraint = new Constraint(){
+    override def validate(name: String, value: String, messages: Messages): Option[String] = {
+      if(value.split(",").exists {
+        _.split(":") match { case Array(userName, isManager) => isManager.toBoolean }
+      }) None else Some("Must select one manager at least.")
+    }
+  }
+
+  protected def disableByNotYourself(paramName: String): Constraint = new Constraint() {
+    override def validate(name: String, value: String, messages: Messages): Option[String] = {
+      params.get(paramName).flatMap { userName =>
+        if(userName == context.loginAccount.get.userName && params.get("removed") == Some("true"))
+          Some("You can't disable your account yourself")
+        else
+          None
+      }
+    }
+  }
+
 }

src/main/scala/gitbucket/core/controller/UserManagementController.scala

@@ -1,204 +0,0 @@
-package gitbucket.core.controller
-
-import gitbucket.core.service.{RepositoryService, AccountService}
-import gitbucket.core.admin.users.html
-import gitbucket.core.util._
-import gitbucket.core.util.ControlUtil._
-import gitbucket.core.util.StringUtil._
-import gitbucket.core.util.Implicits._
-import gitbucket.core.util.Directory._
-import io.github.gitbucket.scalatra.forms._
-import org.scalatra.i18n.Messages
-import org.apache.commons.io.FileUtils
-
-class UserManagementController extends UserManagementControllerBase
-  with AccountService with RepositoryService with AdminAuthenticator
-
-trait UserManagementControllerBase extends AccountManagementControllerBase {
-  self: AccountService with RepositoryService with AdminAuthenticator =>
-  
-  case class NewUserForm(userName: String, password: String, fullName: String,
-                         mailAddress: String, isAdmin: Boolean,
-                         url: Option[String], fileId: Option[String])
-
-  case class EditUserForm(userName: String, password: Option[String], fullName: String,
-                          mailAddress: String, isAdmin: Boolean, url: Option[String],
-                          fileId: Option[String], clearImage: Boolean, isRemoved: Boolean)
-
-  case class NewGroupForm(groupName: String, url: Option[String], fileId: Option[String],
-                          members: String)
-
-  case class EditGroupForm(groupName: String, url: Option[String], fileId: Option[String],
-                           members: String, clearImage: Boolean, isRemoved: Boolean)
-
-  val newUserForm = mapping(
-    "userName"    -> trim(label("Username"     ,text(required, maxlength(100), identifier, uniqueUserName))),
-    "password"    -> trim(label("Password"     ,text(required, maxlength(20)))),
-    "fullName"    -> trim(label("Full Name"    ,text(required, maxlength(100)))),
-    "mailAddress" -> trim(label("Mail Address" ,text(required, maxlength(100), uniqueMailAddress()))),
-    "isAdmin"     -> trim(label("User Type"    ,boolean())),
-    "url"         -> trim(label("URL"          ,optional(text(maxlength(200))))),
-    "fileId"      -> trim(label("File ID"      ,optional(text())))
-  )(NewUserForm.apply)
-
-  val editUserForm = mapping(
-    "userName"    -> trim(label("Username"     ,text(required, maxlength(100), identifier))),
-    "password"    -> trim(label("Password"     ,optional(text(maxlength(20))))),
-    "fullName"    -> trim(label("Full Name"    ,text(required, maxlength(100)))),
-    "mailAddress" -> trim(label("Mail Address" ,text(required, maxlength(100), uniqueMailAddress("userName")))),
-    "isAdmin"     -> trim(label("User Type"    ,boolean())),
-    "url"         -> trim(label("URL"          ,optional(text(maxlength(200))))),
-    "fileId"      -> trim(label("File ID"      ,optional(text()))),
-    "clearImage"  -> trim(label("Clear image"  ,boolean())),
-    "removed"     -> trim(label("Disable"      ,boolean(disableByNotYourself("userName"))))
-  )(EditUserForm.apply)
-
-  val newGroupForm = mapping(
-    "groupName" -> trim(label("Group name" ,text(required, maxlength(100), identifier, uniqueUserName))),
-    "url"       -> trim(label("URL"        ,optional(text(maxlength(200))))),
-    "fileId"    -> trim(label("File ID"    ,optional(text()))),
-    "members"   -> trim(label("Members"    ,text(required, members)))
-  )(NewGroupForm.apply)
-
-  val editGroupForm = mapping(
-    "groupName"  -> trim(label("Group name"  ,text(required, maxlength(100), identifier))),
-    "url"        -> trim(label("URL"         ,optional(text(maxlength(200))))),
-    "fileId"     -> trim(label("File ID"     ,optional(text()))),
-    "members"    -> trim(label("Members"     ,text(required, members))),
-    "clearImage" -> trim(label("Clear image" ,boolean())),
-    "removed"    -> trim(label("Disable"     ,boolean()))
-  )(EditGroupForm.apply)
-
-  get("/admin/users")(adminOnly {
-    val includeRemoved = params.get("includeRemoved").map(_.toBoolean).getOrElse(false)
-    val users          = getAllUsers(includeRemoved)
-    val members        = users.collect { case account if(account.isGroupAccount) =>
-      account.userName -> getGroupMembers(account.userName).map(_.userName)
-    }.toMap
-
-    html.list(users, members, includeRemoved)
-  })
-  
-  get("/admin/users/_newuser")(adminOnly {
-    html.user(None)
-  })
-  
-  post("/admin/users/_newuser", newUserForm)(adminOnly { form =>
-    createAccount(form.userName, sha1(form.password), form.fullName, form.mailAddress, form.isAdmin, form.url)
-    updateImage(form.userName, form.fileId, false)
-    redirect("/admin/users")
-  })
-  
-  get("/admin/users/:userName/_edituser")(adminOnly {
-    val userName = params("userName")
-    html.user(getAccountByUserName(userName, true))
-  })
-  
-  post("/admin/users/:name/_edituser", editUserForm)(adminOnly { form =>
-    val userName = params("userName")
-    getAccountByUserName(userName, true).map { account =>
-
-      if(form.isRemoved){
-        // Remove repositories
-//        getRepositoryNamesOfUser(userName).foreach { repositoryName =>
-//          deleteRepository(userName, repositoryName)
-//          FileUtils.deleteDirectory(getRepositoryDir(userName, repositoryName))
-//          FileUtils.deleteDirectory(getWikiRepositoryDir(userName, repositoryName))
-//          FileUtils.deleteDirectory(getTemporaryDir(userName, repositoryName))
-//        }
-        // Remove from GROUP_MEMBER, COLLABORATOR and REPOSITORY
-        removeUserRelatedData(userName)
-      }
-
-      updateAccount(account.copy(
-        password     = form.password.map(sha1).getOrElse(account.password),
-        fullName     = form.fullName,
-        mailAddress  = form.mailAddress,
-        isAdmin      = form.isAdmin,
-        url          = form.url,
-        isRemoved    = form.isRemoved))
-
-      updateImage(userName, form.fileId, form.clearImage)
-      redirect("/admin/users")
-
-    } getOrElse NotFound
-  })
-
-  get("/admin/users/_newgroup")(adminOnly {
-    html.group(None, Nil)
-  })
-
-  post("/admin/users/_newgroup", newGroupForm)(adminOnly { form =>
-    createGroup(form.groupName, form.url)
-    updateGroupMembers(form.groupName, form.members.split(",").map {
-      _.split(":") match {
-        case Array(userName, isManager) => (userName, isManager.toBoolean)
-      }
-    }.toList)
-    updateImage(form.groupName, form.fileId, false)
-    redirect("/admin/users")
-  })
-
-  get("/admin/users/:groupName/_editgroup")(adminOnly {
-    defining(params("groupName")){ groupName =>
-      html.group(getAccountByUserName(groupName, true), getGroupMembers(groupName))
-    }
-  })
-
-  post("/admin/users/:groupName/_editgroup", editGroupForm)(adminOnly { form =>
-    defining(params("groupName"), form.members.split(",").map {
-      _.split(":") match {
-        case Array(userName, isManager) => (userName, isManager.toBoolean)
-      }
-    }.toList){ case (groupName, members) =>
-      getAccountByUserName(groupName, true).map { account =>
-        updateGroup(groupName, form.url, form.isRemoved)
-
-        if(form.isRemoved){
-          // Remove from GROUP_MEMBER
-          updateGroupMembers(form.groupName, Nil)
-          // Remove repositories
-          getRepositoryNamesOfUser(form.groupName).foreach { repositoryName =>
-            deleteRepository(groupName, repositoryName)
-            FileUtils.deleteDirectory(getRepositoryDir(groupName, repositoryName))
-            FileUtils.deleteDirectory(getWikiRepositoryDir(groupName, repositoryName))
-            FileUtils.deleteDirectory(getTemporaryDir(groupName, repositoryName))
-          }
-        } else {
-          // Update GROUP_MEMBER
-          updateGroupMembers(form.groupName, members)
-          // Update COLLABORATOR for group repositories
-          getRepositoryNamesOfUser(form.groupName).foreach { repositoryName =>
-            removeCollaborators(form.groupName, repositoryName)
-            members.foreach { case (userName, isManager) =>
-              addCollaborator(form.groupName, repositoryName, userName)
-            }
-          }
-        }
-
-        updateImage(form.groupName, form.fileId, form.clearImage)
-        redirect("/admin/users")
-
-      } getOrElse NotFound
-    }
-  })
-
-  private def members: Constraint = new Constraint(){
-    override def validate(name: String, value: String, messages: Messages): Option[String] = {
-      if(value.split(",").exists {
-        _.split(":") match { case Array(userName, isManager) => isManager.toBoolean }
-      }) None else Some("Must select one manager at least.")
-    }
-  }
-
-  protected def disableByNotYourself(paramName: String): Constraint = new Constraint() {
-    override def validate(name: String, value: String, messages: Messages): Option[String] = {
-      params.get(paramName).flatMap { userName =>
-        if(userName == context.loginAccount.get.userName && params.get("removed") == Some("true"))
-          Some("You can't disable your account yourself")
-        else
-          None
-      }
-    }
-  }
-}

src/main/scala/gitbucket/core/model/Account.scala

@@ -11,7 +11,7 @@ trait AccountComponent { self: Profile =>
     val fullName = column[String]("FULL_NAME")
     val mailAddress = column[String]("MAIL_ADDRESS")
     val password = column[String]("PASSWORD")
-    val isAdmin = column[Boolean]("ADMINISTRATOR")
+    val administrator = column[Boolean]("ADMINISTRATOR")
     val url = column[String]("URL")
     val registeredDate = column[java.util.Date]("REGISTERED_DATE")
     val updatedDate = column[java.util.Date]("UPDATED_DATE")
@@ -19,7 +19,7 @@ trait AccountComponent { self: Profile =>
     val image = column[String]("IMAGE")
     val groupAccount = column[Boolean]("GROUP_ACCOUNT")
     val removed = column[Boolean]("REMOVED")
-    def * = (userName, fullName, mailAddress, password, isAdmin, url.?, registeredDate, updatedDate, lastLoginDate.?, image.?, groupAccount, removed) <> (Account.tupled, Account.unapply)
+    def * = (userName, fullName, mailAddress, password, administrator, url.?, registeredDate, updatedDate, lastLoginDate.?, image.?, groupAccount, removed) <> (Account.tupled, Account.unapply)
   }
 }
 
@@ -28,12 +28,12 @@ case class Account(
   fullName: String,
   mailAddress: String,
   password: String,
-  isAdmin: Boolean,
+  administrator: Boolean,
   url: Option[String],
   registeredDate: java.util.Date,
   updatedDate: java.util.Date,
   lastLoginDate: Option[java.util.Date],
   image: Option[String],
-  isGroupAccount: Boolean,
-  isRemoved: Boolean
+  groupAccount: Boolean,
+  removed: Boolean
 )

src/main/scala/gitbucket/core/model/BasicTemplate.scala

@@ -35,7 +35,7 @@ protected[model] trait TemplateComponent { self: Profile =>
       byRepository(userName, repositoryName) && (this.labelId === labelId)
 
     def byLabel(owner: String, repository: String, labelName: String) =
-      byRepository(userName, repositoryName) && (this.labelName === labelName.bind)
+      byRepository(owner, repository) && (this.labelName === labelName.bind)
   }
 
   trait MilestoneTemplate extends BasicTemplate { self: Table[_] =>

src/main/scala/gitbucket/core/model/GroupMembers.scala

@@ -8,13 +8,13 @@ trait GroupMemberComponent { self: Profile =>
   class GroupMembers(tag: Tag) extends Table[GroupMember](tag, "GROUP_MEMBER") {
     val groupName = column[String]("GROUP_NAME", O PrimaryKey)
     val userName = column[String]("USER_NAME", O PrimaryKey)
-    val isManager = column[Boolean]("MANAGER")
-    def * = (groupName, userName, isManager) <> (GroupMember.tupled, GroupMember.unapply)
+    val manager = column[Boolean]("MANAGER")
+    def * = (groupName, userName, manager) <> (GroupMember.tupled, GroupMember.unapply)
   }
 }
 
 case class GroupMember(
   groupName: String,
   userName: String,
-  isManager: Boolean
+  manager: Boolean
 )

src/main/scala/gitbucket/core/model/Repository.scala

@@ -26,7 +26,7 @@ trait RepositoryComponent extends TemplateComponent { self: Profile =>
 case class Repository(
   userName: String,
   repositoryName: String,
-  isPrivate: Boolean,
+  `private`: Boolean,
   description: Option[String],
   defaultBranch: String,
   registeredDate: java.util.Date,

src/main/scala/gitbucket/core/model/WebHook.scala

@@ -7,7 +7,8 @@ trait WebHookComponent extends TemplateComponent { self: Profile =>
 
   class WebHooks(tag: Tag) extends Table[WebHook](tag, "WEB_HOOK") with BasicTemplate {
     val url = column[String]("URL")
-    def * = (userName, repositoryName, url) <> ((WebHook.apply _).tupled, WebHook.unapply)
+    val token = column[Option[String]]("TOKEN", O.Nullable)
+    def * = (userName, repositoryName, url, token) <> ((WebHook.apply _).tupled, WebHook.unapply)
 
     def byPrimaryKey(owner: String, repository: String, url: String) = byRepository(owner, repository) && (this.url === url.bind)
   }
@@ -16,7 +17,8 @@ trait WebHookComponent extends TemplateComponent { self: Profile =>
 case class WebHook(
   userName: String,
   repositoryName: String,
-  url: String
+  url: String,
+  token: Option[String]
 )
 
 object WebHook {

src/main/scala/gitbucket/core/service/AccesTokenService.scala

@@ -1,55 +0,0 @@
-package gitbucket.core.service
-
-import gitbucket.core.model.Profile._
-import profile.simple._
-
-import gitbucket.core.model.{Account, AccessToken}
-import gitbucket.core.util.StringUtil
-
-import scala.util.Random
-
-
-trait AccessTokenService {
-
-  def makeAccessTokenString: String = {
-    val bytes = new Array[Byte](20)
-    Random.nextBytes(bytes)
-    bytes.map("%02x".format(_)).mkString
-  }
-
-  def tokenToHash(token: String): String = StringUtil.sha1(token)
-
-  /**
-   * @retuen (TokenId, Token)
-   */
-  def generateAccessToken(userName: String, note: String)(implicit s: Session): (Int, String) = {
-    var token: String = null
-    var hash: String = null
-    do{
-      token = makeAccessTokenString
-      hash = tokenToHash(token)
-    }while(AccessTokens.filter(_.tokenHash === hash.bind).exists.run)
-    val newToken = AccessToken(
-        userName = userName,
-        note = note,
-        tokenHash = hash)
-    val tokenId = (AccessTokens returning AccessTokens.map(_.accessTokenId)) += newToken
-    (tokenId, token)
-  }
-
-  def getAccountByAccessToken(token: String)(implicit s: Session): Option[Account] =
-    Accounts
-      .innerJoin(AccessTokens)
-      .filter{ case (ac, t) => (ac.userName === t.userName) && (t.tokenHash === tokenToHash(token).bind) && (ac.removed === false.bind) }
-      .map{ case (ac, t) => ac }
-      .firstOption
-
-  def getAccessTokens(userName: String)(implicit s: Session): List[AccessToken] =
-    AccessTokens.filter(_.userName === userName.bind).sortBy(_.accessTokenId.desc).list
-
-  def deleteAccessToken(userName: String, accessTokenId: Int)(implicit s: Session): Unit =
-    AccessTokens filter (t => t.userName === userName.bind && t.accessTokenId === accessTokenId) delete
-
-}
-
-object AccessTokenService extends AccessTokenService

src/main/scala/gitbucket/core/service/AccessTokenService.scala

@@ -0,0 +1,65 @@
+package gitbucket.core.service
+
+import gitbucket.core.model.Profile._
+import profile.simple._
+
+import gitbucket.core.model.{Account, AccessToken}
+import gitbucket.core.util.StringUtil
+import gitbucket.core.servlet.Database._
+import io.getquill._
+
+import scala.util.Random
+
+
+trait AccessTokenService {
+
+  def makeAccessTokenString: String = {
+    val bytes = new Array[Byte](20)
+    Random.nextBytes(bytes)
+    bytes.map("%02x".format(_)).mkString
+  }
+
+  def tokenToHash(token: String): String = StringUtil.sha1(token)
+
+  /**
+   * @retuen (TokenId, Token)
+   */
+  def generateAccessToken(userName: String, note: String)(implicit s: Session): (Int, String) = {
+    var token: String = null
+    var hash: String = null
+    do{
+      token = makeAccessTokenString
+      hash  = tokenToHash(token)
+    } while (
+      db.run(quote { (hash: String) => query[AccessToken].filter(_.tokenHash == hash).nonEmpty })(hash).head
+    )
+    val newToken = AccessToken(
+        userName = userName,
+        note = note,
+        tokenHash = hash)
+
+    // TODO Remain Slick code
+    val tokenId = (AccessTokens returning AccessTokens.map(_.accessTokenId)) += newToken
+    (tokenId, token)
+  }
+
+  def getAccountByAccessToken(token: String): Option[Account] =
+    db.run(quote { (tokenHash: String) =>
+        query[AccessToken].filter(_.tokenHash == tokenHash)
+          .join(query[Account]).on { (t, a) => t.userName == a.userName && a.registeredDate == false }
+          .map { case (t, a) => a }
+    })(tokenToHash(token)).headOption
+
+  def getAccessTokens(userName: String): List[AccessToken] =
+    db.run(quote { (userName: String) =>
+      query[AccessToken].filter(_.userName == userName).sortBy(_.accessTokenId)(Ord.desc)
+    })(userName)
+
+  def deleteAccessToken(userName: String, accessTokenId: Int): Unit =
+    db.run(quote { (userName: String, accessTokenId: Int) =>
+      query[AccessToken].filter { t => t.userName == userName && t.accessTokenId == accessTokenId }.delete
+    })(List((userName, accessTokenId)))
+
+}
+
+object AccessTokenService extends AccessTokenService

src/main/scala/gitbucket/core/service/AccountService.scala

@@ -1,20 +1,23 @@
 package gitbucket.core.service
 
-import gitbucket.core.model.{GroupMember, Account}
+import java.util.Date
+
+import gitbucket.core.model.{GroupMember, Account, Collaborator, Repository}
 import gitbucket.core.model.Profile._
 import gitbucket.core.util.{StringUtil, LDAPUtil}
 import gitbucket.core.service.SystemSettingsService.SystemSettings
 import profile.simple._
 import StringUtil._
 import org.slf4j.LoggerFactory
-// TODO Why is direct import required?
-import gitbucket.core.model.Profile.dateColumnType
+
+import gitbucket.core.servlet.Database._
+import io.getquill._
 
 trait AccountService {
 
   private val logger = LoggerFactory.getLogger(classOf[AccountService])
 
-  def authenticate(settings: SystemSettings, userName: String, password: String)(implicit s: Session): Option[Account] =
+  def authenticate(settings: SystemSettings, userName: String, password: String): Option[Account] =
     if(settings.ldapAuthentication){
       ldapAuthentication(settings, userName, password)
     } else {
@@ -24,22 +27,21 @@ trait AccountService {
   /**
    * Authenticate by internal database.
    */
-  private def defaultAuthentication(userName: String, password: String)(implicit s: Session) = {
+  private def defaultAuthentication(userName: String, password: String) = {
     getAccountByUserName(userName).collect {
-      case account if(!account.isGroupAccount && account.password == sha1(password)) => Some(account)
+      case account if(!account.groupAccount && account.password == sha1(password)) => Some(account)
     } getOrElse None
   }
 
   /**
    * Authenticate by LDAP.
    */
-  private def ldapAuthentication(settings: SystemSettings, userName: String, password: String)
-                                (implicit s: Session): Option[Account] = {
+  private def ldapAuthentication(settings: SystemSettings, userName: String, password: String): Option[Account] = {
     LDAPUtil.authenticate(settings.ldap.get, userName, password) match {
       case Right(ldapUserInfo) => {
         // Create or update account by LDAP information
         getAccountByUserName(ldapUserInfo.userName, true) match {
-          case Some(x) if(!x.isRemoved) => {
+          case Some(x) if(!x.removed) => {
             if(settings.ldap.get.mailAttribute.getOrElse("").isEmpty) {
               updateAccount(x.copy(fullName = ldapUserInfo.fullName))
             } else {
@@ -47,16 +49,16 @@ trait AccountService {
             }
             getAccountByUserName(ldapUserInfo.userName)
           }
-          case Some(x) if(x.isRemoved)  => {
+          case Some(x) if(x.removed)  => {
             logger.info("LDAP Authentication Failed: Account is already registered but disabled.")
             defaultAuthentication(userName, password)
           }
           case None => getAccountByMailAddress(ldapUserInfo.mailAddress, true) match {
-            case Some(x) if(!x.isRemoved) => {
+            case Some(x) if(!x.removed) => {
               updateAccount(x.copy(fullName = ldapUserInfo.fullName))
               getAccountByUserName(ldapUserInfo.userName)
             }
-            case Some(x) if(x.isRemoved)  => {
+            case Some(x) if(x.removed)  => {
               logger.info("LDAP Authentication Failed: Account is already registered but disabled.")
               defaultAuthentication(userName, password)
             }
@@ -74,113 +76,163 @@ trait AccountService {
     }
   }
 
-  def getAccountByUserName(userName: String, includeRemoved: Boolean = false)(implicit s: Session): Option[Account] =
-    Accounts filter(t => (t.userName === userName.bind) && (t.removed === false.bind, !includeRemoved)) firstOption
+  def getAccountByUserName(userName: String, includeRemoved: Boolean = false): Option[Account] = {
+    db.run(quote { (userName: String, includeRemoved: Boolean) =>
+      query[Account].filter { t =>
+        if(includeRemoved){
+          t.userName == userName
+        } else {
+          t.userName == userName && t.removed == false
+        }
+      }
+    })(userName, includeRemoved).headOption
+  }
 
-  def getAccountsByUserNames(userNames: Set[String], knowns:Set[Account], includeRemoved: Boolean = false)(implicit s: Session): Map[String, Account] = {
+
+  def getAccountsByUserNames(userNames: Set[String], knowns:Set[Account], includeRemoved: Boolean = false): Map[String, Account] = {
     val map = knowns.map(a => a.userName -> a).toMap
     val needs = userNames -- map.keySet
     if(needs.isEmpty){
       map
-    }else{
-      map ++ Accounts.filter(t => (t.userName inSetBind needs) && (t.removed === false.bind, !includeRemoved)).list.map(a => a.userName -> a).toMap
+    } else {
+      map ++ db.run(quote { (userNames: Set[String]) =>
+          query[Account].filter { t => userNames.contains(t.userName) && t.removed == false }
+      })(userNames.toSet).map { a => a.userName -> a }.toMap
     }
   }
 
-  def getAccountByMailAddress(mailAddress: String, includeRemoved: Boolean = false)(implicit s: Session): Option[Account] =
-    Accounts filter(t => (t.mailAddress.toLowerCase === mailAddress.toLowerCase.bind) && (t.removed === false.bind, !includeRemoved)) firstOption
+  def getAccountByMailAddress(mailAddress: String, includeRemoved: Boolean = false): Option[Account] = {
+    db.run(quote { (mailAddress: String, includeRemoved: Boolean) =>
+      query[Account].filter { t =>
+        if(includeRemoved){
+          t.mailAddress.toLowerCase == mailAddress.toLowerCase
+        } else {
+          t.mailAddress.toLowerCase == mailAddress.toLowerCase && t.removed == false
+        }
+      }
+    })(mailAddress, includeRemoved).headOption
+  }
 
-  def getAllUsers(includeRemoved: Boolean = true)(implicit s: Session): List[Account] =
-    if(includeRemoved){
-      Accounts sortBy(_.userName) list
-    } else {
-      Accounts filter (_.removed === false.bind) sortBy(_.userName) list
-    }
+  def getAllUsers(includeRemoved: Boolean = true): List[Account] = {
+    db.run(
+      if(includeRemoved){
+        quote { query[Account].sortBy(_.userName) }
+      } else {
+        quote { query[Account].filter(_.removed == false).sortBy(_.userName) }
+      }
+    )
+  }
 
-  def createAccount(userName: String, password: String, fullName: String, mailAddress: String, isAdmin: Boolean, url: Option[String])
-                   (implicit s: Session): Unit =
-    Accounts insert Account(
+  def createAccount(userName: String, password: String, fullName: String, mailAddress: String, isAdmin: Boolean, url: Option[String]): Unit = {
+    db.run(quote { query[Account].insert })(Account(
       userName       = userName,
       password       = password,
       fullName       = fullName,
       mailAddress    = mailAddress,
-      isAdmin        = isAdmin,
+      administrator  = isAdmin,
       url            = url,
       registeredDate = currentDate,
       updatedDate    = currentDate,
       lastLoginDate  = None,
       image          = None,
-      isGroupAccount = false,
-      isRemoved      = false)
+      groupAccount   = false,
+      removed        = false
+    ))
+  }
 
-  def updateAccount(account: Account)(implicit s: Session): Unit =
-    Accounts
-      .filter { a =>  a.userName === account.userName.bind }
-      .map    { a => (a.password, a.fullName, a.mailAddress, a.isAdmin, a.url.?, a.registeredDate, a.updatedDate, a.lastLoginDate.?, a.removed) }
-      .update (
-        account.password,
-        account.fullName,
-        account.mailAddress,
-        account.isAdmin,
-        account.url,
-        account.registeredDate,
-        currentDate,
-        account.lastLoginDate,
-        account.isRemoved)
+  def updateAccount(account: Account): Unit = {
+    db.run(quote { (userName: String, password: String, fullName: String, mailAddress: String, administrator: Boolean,
+                    url: Option[String], registeredDate: Date, updatedDate: Date, lastLoginDate: Option[Date], removed: Boolean) =>
+      query[Account].filter(_.userName == userName).update(
+        _.password       -> password,
+        _.fullName       -> fullName,
+        _.mailAddress    -> mailAddress,
+        _.administrator  -> administrator,
+        _.url            -> url,
+        _.registeredDate -> registeredDate,
+        _.updatedDate    -> updatedDate,
+        _.lastLoginDate  -> lastLoginDate,
+        _.removed        -> removed
+      )
+    })((
+      account.userName,
+      account.password,
+      account.fullName,
+      account.mailAddress,
+      account.administrator,
+      account.url,
+      account.registeredDate,
+      currentDate,
+      account.lastLoginDate,
+      account.removed
+    ))
+  }
 
-  def updateAvatarImage(userName: String, image: Option[String])(implicit s: Session): Unit =
-    Accounts.filter(_.userName === userName.bind).map(_.image.?).update(image)
+  def updateAvatarImage(userName: String, image: Option[String]): Unit = {
+    db.run(quote { (userName: String, image: Option[String]) =>
+      query[Account].filter(_.userName == userName).update(_.image -> image)
+    })((userName, image))
+  }
 
-  def updateLastLoginDate(userName: String)(implicit s: Session): Unit =
-    Accounts.filter(_.userName === userName.bind).map(_.lastLoginDate).update(currentDate)
+  def updateLastLoginDate(userName: String): Unit = {
+    db.run(quote { (userName: String, lastLoginDate: Option[Date]) =>
+      query[Account].filter(_.userName == userName).update(_.lastLoginDate -> lastLoginDate)
+    })((userName, Some(currentDate)))
+  }
 
-  def createGroup(groupName: String, url: Option[String])(implicit s: Session): Unit =
-    Accounts insert Account(
+  def createGroup(groupName: String, url: Option[String]): Unit = {
+    db.run( quote { query[Account].insert })(List(Account(
       userName       = groupName,
       password       = "",
       fullName       = groupName,
       mailAddress    = groupName + "@devnull",
-      isAdmin        = false,
+      administrator  = false,
       url            = url,
       registeredDate = currentDate,
       updatedDate    = currentDate,
       lastLoginDate  = None,
       image          = None,
-      isGroupAccount = true,
-      isRemoved      = false)
+      groupAccount  = true,
+      removed       = false
+    )))
+  }
 
-  def updateGroup(groupName: String, url: Option[String], removed: Boolean)(implicit s: Session): Unit =
-    Accounts.filter(_.userName === groupName.bind).map(t => t.url.? -> t.removed).update(url, removed)
+  def updateGroup(groupName: String, url: Option[String], removed: Boolean): Unit = {
+    db.run(quote { (groupName: String, url: Option[String], removed: Boolean) =>
+      query[Account].filter(_.userName == groupName).update(_.url -> url, _.removed -> removed)
+    })(List((groupName, url, removed)))
+  }
+
+  def updateGroupMembers(groupName: String, members: List[(String, Boolean)]): Unit = {
+    db.run(quote { (groupName: String) => query[GroupMember].filter(_.groupName == groupName).delete })(groupName)
 
-  def updateGroupMembers(groupName: String, members: List[(String, Boolean)])(implicit s: Session): Unit = {
-    GroupMembers.filter(_.groupName === groupName.bind).delete
     members.foreach { case (userName, isManager) =>
-      GroupMembers insert GroupMember (groupName, userName, isManager)
+      db.run(quote { query[GroupMember].insert })(GroupMember(groupName, userName, isManager))
     }
   }
 
-  def getGroupMembers(groupName: String)(implicit s: Session): List[GroupMember] =
-    GroupMembers
-      .filter(_.groupName === groupName.bind)
-      .sortBy(_.userName)
-      .list
-
-  def getGroupsByUserName(userName: String)(implicit s: Session): List[String] =
-    GroupMembers
-      .filter(_.userName === userName.bind)
-      .sortBy(_.groupName)
-      .map(_.groupName)
-      .list
-
-  def removeUserRelatedData(userName: String)(implicit s: Session): Unit = {
-    GroupMembers.filter(_.userName === userName.bind).delete
-    Collaborators.filter(_.collaboratorName === userName.bind).delete
-    Repositories.filter(_.userName === userName.bind).delete
+  def getGroupMembers(groupName: String): List[GroupMember] = {
+    db.run(quote { (groupName: String) =>
+      query[GroupMember].filter(_.groupName == groupName).sortBy(_.userName)
+    })(groupName)
   }
 
-  def getGroupNames(userName: String)(implicit s: Session): List[String] = {
-    List(userName) ++
-      Collaborators.filter(_.collaboratorName === userName.bind).sortBy(_.userName).map(_.userName).list
+  def getGroupsByUserName(userName: String): List[String] = {
+    db.run(quote { (userName: String) =>
+      query[GroupMember].filter(_.userName == userName).sortBy(_.groupName).map(_.groupName)
+    })(userName)
+  }
+
+  def removeUserRelatedData(userName: String): Unit = {
+    db.run(quote { (userName: String) => query[GroupMember].filter(_.userName == userName).delete })(userName)
+    db.run(quote { (userName: String) => query[Collaborator].filter(_.collaboratorName == userName).delete })(userName)
+    db.run(quote { (userName: String) => query[Repository].filter(_.userName == userName).delete })(userName)
+  }
+
+  def getGroupNames(userName: String): List[String] = {
+    List(userName) ++ db.run(quote { (userName: String) =>
+      query[Collaborator].filter(_.collaboratorName == userName).sortBy(_.userName).map(_.userName)
+    })(userName)
   }
 
 }

src/main/scala/gitbucket/core/service/ActivityService.scala

@@ -1,194 +1,180 @@
 package gitbucket.core.service
 
-import gitbucket.core.model.Activity
+import gitbucket.core.model._
 import gitbucket.core.model.Profile._
 import gitbucket.core.util.JGitUtil
 import profile.simple._
 
+import gitbucket.core.servlet.Database._
+import io.getquill._
+
 trait ActivityService {
 
-  def deleteOldActivities(limit: Int)(implicit s: Session): Int = {
-    Activities.map(_.activityId).sortBy(_ desc).drop(limit).firstOption.map { id =>
-      Activities.filter(_.activityId <= id.bind).delete
+  def deleteOldActivities(limit: Int): Int =
+    db.run (quote { (limit: Int) =>
+      query[Activity].map(_.activityId).sortBy(x => x)(Ord.desc).drop(limit)
+    })(limit).headOption.map { activityId =>
+      db.run (
+        quote { (activityId: Int) => query[Activity].filter(_.activityId <= activityId).delete }
+      )(activityId)
     } getOrElse 0
-  }
 
-  def getActivitiesByUser(activityUserName: String, isPublic: Boolean)(implicit s: Session): List[Activity] =
-    Activities
-      .innerJoin(Repositories).on((t1, t2) => t1.byRepository(t2.userName, t2.repositoryName))
-      .filter { case (t1, t2) =>
-        if(isPublic){
-          (t1.activityUserName === activityUserName.bind) && (t2.isPrivate === false.bind)
-        } else {
-          (t1.activityUserName === activityUserName.bind)
+  def getActivitiesByUser(activityUserName: String, isPublic: Boolean): List[Activity] =
+    db.run(quote { (activityUserName: String, isPublic: Boolean) =>
+      query[Activity].join(query[Repository]).on((a, r) => a.userName == r.userName && a.repositoryName == r.repositoryName)
+        .filter { case (a, r) =>
+          if(isPublic){
+            a.activityUserName == activityUserName
+          } else {
+            a.activityUserName == activityUserName && r.`private` == false
+          }
         }
-      }
-      .sortBy { case (t1, t2) => t1.activityId desc }
-      .map    { case (t1, t2) => t1 }
-      .take(30)
-      .list
+        .sortBy { case (a, r) => a.activityId }(Ord.desc)
+        .map    { case (a, r) => a }
+        .take(30)
+    })(activityUserName, isPublic)
 
-  def getRecentActivities()(implicit s: Session): List[Activity] =
-    Activities
-      .innerJoin(Repositories).on((t1, t2) => t1.byRepository(t2.userName, t2.repositoryName))
-      .filter { case (t1, t2) =>  t2.isPrivate === false.bind }
-      .sortBy { case (t1, t2) => t1.activityId desc }
-      .map    { case (t1, t2) => t1 }
-      .take(30)
-      .list
+  def getRecentActivities(): List[Activity] =
+    db.run(quote {
+      query[Activity].join(query[Repository]).on((a, r) => a.userName == r.userName && a.repositoryName == r.repositoryName)
+        .filter { case (a, r) => r.`private` == false}
+        .sortBy { case (a, r) => a.activityId }(Ord.desc)
+        .map    { case (a, r) => a }
+        .take(30)
+    })
 
-  def getRecentActivitiesByOwners(owners : Set[String])(implicit s: Session): List[Activity] =
-    Activities
-      .innerJoin(Repositories).on((t1, t2) => t1.byRepository(t2.userName, t2.repositoryName))
-      .filter { case (t1, t2) => (t2.isPrivate === false.bind) || (t2.userName inSetBind owners) }
-      .sortBy { case (t1, t2) => t1.activityId desc }
-      .map    { case (t1, t2) => t1 }
-      .take(30)
-      .list
+  def getRecentActivitiesByOwners(owners : Set[String]): List[Activity] =
+    db.run(quote { (owners: Set[String]) =>
+      query[Activity].join(query[Repository]).on((a, r) => a.userName == r.userName && a.repositoryName == r.repositoryName)
+        .filter { case (a, r) => r.`private` == false || owners.contains(r.userName) }
+        .sortBy { case (a, r) => a.activityId }(Ord.desc)
+        .map    { case (a, r) => a }
+        .take(30)
+    })(owners)
 
-  def recordCreateRepositoryActivity(userName: String, repositoryName: String, activityUserName: String)
-                                    (implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordCreateRepositoryActivity(userName: String, repositoryName: String, activityUserName: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "create_repository",
       s"[user:${activityUserName}] created [repo:${userName}/${repositoryName}]",
-      None,
-      currentDate)
+      None)
 
-  def recordCreateIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String)
-                               (implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordCreateIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "open_issue",
       s"[user:${activityUserName}] opened issue [issue:${userName}/${repositoryName}#${issueId}]",
-      Some(title), 
-      currentDate)
+      Some(title))
 
-  def recordCloseIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String)
-                              (implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordCloseIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "close_issue",
       s"[user:${activityUserName}] closed issue [issue:${userName}/${repositoryName}#${issueId}]",
-      Some(title),
-      currentDate)
+      Some(title))
 
-  def recordClosePullRequestActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String)
-                                    (implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordClosePullRequestActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "close_issue",
       s"[user:${activityUserName}] closed pull request [pullreq:${userName}/${repositoryName}#${issueId}]",
-      Some(title),
-      currentDate)
+      Some(title))
 
-  def recordReopenIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String)
-                               (implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordReopenIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "reopen_issue",
       s"[user:${activityUserName}] reopened issue [issue:${userName}/${repositoryName}#${issueId}]",
-      Some(title),
-      currentDate)
+      Some(title))
 
-  def recordCommentIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, comment: String)
-                                (implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordCommentIssueActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, comment: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "comment_issue",
       s"[user:${activityUserName}] commented on issue [issue:${userName}/${repositoryName}#${issueId}]",
-      Some(cut(comment, 200)),
-      currentDate)
+      Some(cut(comment, 200)))
 
-  def recordCommentPullRequestActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, comment: String)
-                                      (implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordCommentPullRequestActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, comment: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "comment_issue",
       s"[user:${activityUserName}] commented on pull request [pullreq:${userName}/${repositoryName}#${issueId}]",
-      Some(cut(comment, 200)),
-      currentDate)
+      Some(cut(comment, 200)))
 
-  def recordCommentCommitActivity(userName: String, repositoryName: String, activityUserName: String, commitId: String, comment: String)
-                                 (implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordCommentCommitActivity(userName: String, repositoryName: String, activityUserName: String, commitId: String, comment: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "comment_commit",
       s"[user:${activityUserName}] commented on commit [commit:${userName}/${repositoryName}@${commitId}]",
-      Some(cut(comment, 200)),
-      currentDate
-    )
+      Some(cut(comment, 200)))
 
-  def recordCreateWikiPageActivity(userName: String, repositoryName: String, activityUserName: String, pageName: String)
-                                  (implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordCreateWikiPageActivity(userName: String, repositoryName: String, activityUserName: String, pageName: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "create_wiki",
       s"[user:${activityUserName}] created the [repo:${userName}/${repositoryName}] wiki",
-      Some(pageName),
-      currentDate)
+      Some(pageName))
 
-  def recordEditWikiPageActivity(userName: String, repositoryName: String, activityUserName: String, pageName: String, commitId: String)
-                                (implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordEditWikiPageActivity(userName: String, repositoryName: String, activityUserName: String, pageName: String, commitId: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "edit_wiki",
       s"[user:${activityUserName}] edited the [repo:${userName}/${repositoryName}] wiki",
-      Some(pageName + ":" + commitId),
-      currentDate)
+      Some(pageName + ":" + commitId))
 
   def recordPushActivity(userName: String, repositoryName: String, activityUserName: String,
-      branchName: String, commits: List[JGitUtil.CommitInfo])(implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+      branchName: String, commits: List[JGitUtil.CommitInfo]): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "push",
       s"[user:${activityUserName}] pushed to [branch:${userName}/${repositoryName}#${branchName}] at [repo:${userName}/${repositoryName}]",
-      Some(commits.map { commit => commit.id + ":" + commit.shortMessage }.mkString("\n")),
-      currentDate)
+      Some(commits.map { commit => commit.id + ":" + commit.shortMessage }.mkString("\n")))
 
   def recordCreateTagActivity(userName: String, repositoryName: String, activityUserName: String, 
-      tagName: String, commits: List[JGitUtil.CommitInfo])(implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+      tagName: String, commits: List[JGitUtil.CommitInfo]): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "create_tag",
       s"[user:${activityUserName}] created tag [tag:${userName}/${repositoryName}#${tagName}] at [repo:${userName}/${repositoryName}]",
-      None,
-      currentDate)
+      None)
 
   def recordDeleteTagActivity(userName: String, repositoryName: String, activityUserName: String,
-                              tagName: String, commits: List[JGitUtil.CommitInfo])(implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+                              tagName: String, commits: List[JGitUtil.CommitInfo]): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "delete_tag",
       s"[user:${activityUserName}] deleted tag ${tagName} at [repo:${userName}/${repositoryName}]",
-      None,
-      currentDate)
+      None)
 
-  def recordCreateBranchActivity(userName: String, repositoryName: String, activityUserName: String, branchName: String)
-                                (implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordCreateBranchActivity(userName: String, repositoryName: String, activityUserName: String, branchName: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "create_branch",
       s"[user:${activityUserName}] created branch [branch:${userName}/${repositoryName}#${branchName}] at [repo:${userName}/${repositoryName}]",
-      None,
-      currentDate)
+      None)
 
-  def recordDeleteBranchActivity(userName: String, repositoryName: String, activityUserName: String, branchName: String)
-                                (implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordDeleteBranchActivity(userName: String, repositoryName: String, activityUserName: String, branchName: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "delete_branch",
       s"[user:${activityUserName}] deleted branch ${branchName} at [repo:${userName}/${repositoryName}]",
-      None,
-      currentDate)
+      None)
 
-  def recordForkActivity(userName: String, repositoryName: String, activityUserName: String, forkedUserName: String)(implicit s: Session): Unit = 
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordForkActivity(userName: String, repositoryName: String, activityUserName: String, forkedUserName: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "fork",
       s"[user:${activityUserName}] forked [repo:${userName}/${repositoryName}] to [repo:${forkedUserName}/${repositoryName}]",
-      None,
-      currentDate)
+      None)
 
-  def recordPullRequestActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String)
-                               (implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordPullRequestActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, title: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "open_pullreq",
       s"[user:${activityUserName}] opened pull request [pullreq:${userName}/${repositoryName}#${issueId}]",
-      Some(title),
-      currentDate)
+      Some(title))
 
-  def recordMergeActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, message: String)
-                         (implicit s: Session): Unit =
-    Activities insert Activity(userName, repositoryName, activityUserName,
+  def recordMergeActivity(userName: String, repositoryName: String, activityUserName: String, issueId: Int, message: String): Unit =
+    insertActivity(userName, repositoryName, activityUserName,
       "merge_pullreq",
       s"[user:${activityUserName}] merged pull request [pullreq:${userName}/${repositoryName}#${issueId}]",
-      Some(message),
-      currentDate)
+      Some(message))
+
+  private def insertActivity(userName: String, repositoryName: String, activityUserName: String, activityType: String,
+                             message: String, additionalInfo: Option[String]): Unit = {
+    db.run(quote { query[Activity].insert })(Activity(
+      userName         = userName,
+      repositoryName   = repositoryName,
+      activityUserName = activityUserName,
+      activityType     = activityType,
+      message          = message,
+      additionalInfo   = additionalInfo,
+      activityDate     = currentDate
+    ))
+  }
 
   private def cut(value: String, length: Int): String =
     if(value.length > length) value.substring(0, length) + "..." else value

src/main/scala/gitbucket/core/service/CommitsService.scala

@@ -1,35 +1,34 @@
 package gitbucket.core.service
 
 import gitbucket.core.model.CommitComment
-import gitbucket.core.util.{StringUtil, Implicits}
-
-import scala.slick.jdbc.{StaticQuery => Q}
-import Q.interpolation
 import gitbucket.core.model.Profile._
 import profile.simple._
-import Implicits._
-import StringUtil._
+
+import gitbucket.core.servlet.Database._
+import io.getquill._
 
 
 trait CommitsService {
 
-  def getCommitComments(owner: String, repository: String, commitId: String, includePullRequest: Boolean)(implicit s: Session) =
-    CommitComments filter {
-      t => t.byCommit(owner, repository, commitId) && (t.issueId.isEmpty || includePullRequest)
-    } list
+  def getCommitComments(owner: String, repository: String, commitId: String, includePullRequest: Boolean) =
+    db.run(quote { (owner: String, repository: String, commitId: String, includePullRequest: Boolean) =>
+      query[CommitComment].filter { t =>
+        t.userName == owner && t.repositoryName == repository && t.commitId == commitId && (t.issueId.isEmpty || includePullRequest)
+      }
+    })(owner, repository, commitId, includePullRequest)
 
-  def getCommitComment(owner: String, repository: String, commentId: String)(implicit s: Session) =
+  def getCommitComment(owner: String, repository: String, commentId: String) =
     if (commentId forall (_.isDigit))
-      CommitComments filter { t =>
-        t.byPrimaryKey(commentId.toInt) && t.byRepository(owner, repository)
-      } firstOption
+      db.run(quote { (owner: String, repository: String, commentId: Int) =>
+        query[CommitComment].filter(t => t.userName == owner && t.repositoryName == repository && t.commentId == commentId)
+      })(owner, repository, commentId.toInt).headOption
     else
       None
 
   def createCommitComment(owner: String, repository: String, commitId: String, loginUser: String,
                           content: String, fileName: Option[String], oldLine: Option[Int], newLine: Option[Int],
                           issueId: Option[Int])(implicit s: Session): Int =
-    CommitComments.autoInc insert CommitComment(
+    CommitComments.autoInc insert CommitComment( // TODO Remain Slick code
       userName          = owner,
       repositoryName    = repository,
       commitId          = commitId,
@@ -42,13 +41,12 @@ trait CommitsService {
       updatedDate       = currentDate,
       issueId           = issueId)
 
-  def updateCommitComment(commentId: Int, content: String)(implicit s: Session) =
-    CommitComments
-      .filter (_.byPrimaryKey(commentId))
-      .map { t =>
-      t.content -> t.updatedDate
-    }.update (content, currentDate)
+  def updateCommitComment(commentId: Int, content: String) =
+    db.run(quote { (commentId: Int, content: String, updatedDate: java.util.Date) =>
+      query[CommitComment].filter(_.commentId == commentId).update(_.content -> content, _.updatedDate -> updatedDate)
+    })(commentId, content, currentDate)
+
+  def deleteCommitComment(commentId: Int) =
+    db.run(quote { (commentId: Int) => query[CommitComment].filter(_.commentId == commentId).delete })(commentId)
 
-  def deleteCommitComment(commentId: Int)(implicit s: Session) =
-    CommitComments filter (_.byPrimaryKey(commentId)) delete
 }

src/main/scala/gitbucket/core/service/HandleCommentService.scala

@@ -0,0 +1,91 @@
+package gitbucket.core.service
+
+import gitbucket.core.controller.Context
+import gitbucket.core.model.Issue
+import gitbucket.core.model.Profile._
+import gitbucket.core.util.ControlUtil._
+import gitbucket.core.util.Implicits._
+import gitbucket.core.util.Notifier
+import profile.simple._
+
+trait HandleCommentService {
+  self: RepositoryService with IssuesService with ActivityService
+    with WebHookService with WebHookIssueCommentService with WebHookPullRequestService =>
+
+  /**
+   * @see [[https://github.com/takezoe/gitbucket/wiki/CommentAction]]
+   */
+  def handleComment(issue: Issue, content: Option[String], repository: RepositoryService.RepositoryInfo, actionOpt: Option[String])
+                   (implicit context: Context, s: Session) = {
+
+    defining(repository.owner, repository.name){ case (owner, name) =>
+      val userName = context.loginAccount.get.userName
+
+      val (action, recordActivity) = actionOpt
+        .collect {
+          case "close" if(!issue.closed) => true  ->
+            (Some("close")  -> Some(if(issue.isPullRequest) recordClosePullRequestActivity _ else recordCloseIssueActivity _))
+          case "reopen" if(issue.closed) => false ->
+            (Some("reopen") -> Some(recordReopenIssueActivity _))
+        }
+        .map { case (closed, t) =>
+          updateClosed(owner, name, issue.issueId, closed)
+          t
+        }
+        .getOrElse(None -> None)
+
+      val commentId = (content, action) match {
+        case (None, None) => None
+        case (None, Some(action)) => Some(createComment(owner, name, userName, issue.issueId, action.capitalize, action))
+        case (Some(content), _) => Some(createComment(owner, name, userName, issue.issueId, content, action.map(_+ "_comment").getOrElse("comment")))
+      }
+
+      // record comment activity if comment is entered
+      content foreach {
+        (if(issue.isPullRequest) recordCommentPullRequestActivity _ else recordCommentIssueActivity _)
+        (owner, name, userName, issue.issueId, _)
+      }
+      recordActivity foreach ( _ (owner, name, userName, issue.issueId, issue.title) )
+
+      // extract references and create refer comment
+      content.map { content =>
+        createReferComment(owner, name, issue, content, context.loginAccount.get)
+      }
+
+      // call web hooks
+      action match {
+        case None => commentId.map{ commentIdSome => callIssueCommentWebHook(repository, issue, commentIdSome, context.loginAccount.get) }
+        case Some(act) => val webHookAction = act match {
+          case "open"   => "opened"
+          case "reopen" => "reopened"
+          case "close"  => "closed"
+          case _ => act
+        }
+          if(issue.isPullRequest){
+            callPullRequestWebHook(webHookAction, repository, issue.issueId, context.baseUrl, context.loginAccount.get)
+          } else {
+            callIssuesWebHook(webHookAction, repository, issue, context.baseUrl, context.loginAccount.get)
+          }
+      }
+
+      // notifications
+      Notifier() match {
+        case f =>
+          content foreach {
+            f.toNotify(repository, issue, _){
+              Notifier.msgComment(s"${context.baseUrl}/${owner}/${name}/${
+                if(issue.isPullRequest) "pull" else "issues"}/${issue.issueId}#comment-${commentId.get}")
+            }
+          }
+          action foreach {
+            f.toNotify(repository, issue, _){
+              Notifier.msgStatus(s"${context.baseUrl}/${owner}/${name}/issues/${issue.issueId}")
+            }
+          }
+      }
+
+      commentId.map( issue -> _ )
+    }
+  }
+
+}

src/main/scala/gitbucket/core/service/IssuesService.scala

@@ -1,6 +1,8 @@
 package gitbucket.core.service
 
 import gitbucket.core.model.Profile._
+import gitbucket.core.util.JGitUtil.CommitInfo
+import gitbucket.core.util.StringUtil
 import profile.simple._
 
 import gitbucket.core.util.StringUtil._
@@ -12,6 +14,7 @@ import Q.interpolation
 
 
 trait IssuesService {
+  self: AccountService =>
   import IssuesService._
 
   def getIssue(owner: String, repository: String, issueId: String)(implicit s: Session) =
@@ -394,12 +397,35 @@ trait IssuesService {
       }
     }
   }
+
+  def createReferComment(owner: String, repository: String, fromIssue: Issue, message: String, loginAccount: Account)(implicit s: Session) = {
+    StringUtil.extractIssueId(message).foreach { issueId =>
+      val content = fromIssue.issueId + ":" + fromIssue.title
+      if(getIssue(owner, repository, issueId).isDefined){
+        // Not add if refer comment already exist.
+        if(!getComments(owner, repository, issueId.toInt).exists { x => x.action == "refer" && x.content == content }) {
+          createComment(owner, repository, loginAccount.userName, issueId.toInt, content, "refer")
+        }
+      }
+    }
+  }
+
+  def createIssueComment(owner: String, repository: String, commit: CommitInfo)(implicit s: Session) = {
+    StringUtil.extractIssueId(commit.fullMessage).foreach { issueId =>
+      if(getIssue(owner, repository, issueId).isDefined){
+        getAccountByMailAddress(commit.committerEmailAddress).foreach { account =>
+          createComment(owner, repository, account.userName, issueId.toInt, commit.fullMessage + " " + commit.id, "commit")
+        }
+      }
+    }
+  }
+
 }
 
 object IssuesService {
   import javax.servlet.http.HttpServletRequest
 
-  val IssueLimit = 30
+  val IssueLimit = 25
 
   case class IssueSearchCondition(
       labels: Set[String] = Set.empty,

src/main/scala/gitbucket/core/service/ProtectedBranchService.scala

@@ -76,7 +76,7 @@ object ProtectedBranchService {
     includeAdministrators: Boolean) extends AccountService with CommitStatusService {
 
     def isAdministrator(pusher: String)(implicit session: Session): Boolean =
-      pusher == owner || getGroupMembers(owner).filter(gm => gm.userName == pusher && gm.isManager).nonEmpty
+      pusher == owner || getGroupMembers(owner).filter(gm => gm.userName == pusher && gm.manager).nonEmpty
 
     /**
      * Can't be force pushed

src/main/scala/gitbucket/core/service/RepositoryCreationService.scala

@@ -0,0 +1,79 @@
+package gitbucket.core.service
+
+import gitbucket.core.model.Profile._
+import gitbucket.core.util.ControlUtil._
+import gitbucket.core.util.Directory._
+import gitbucket.core.util.JGitUtil
+import gitbucket.core.model.Account
+import org.eclipse.jgit.api.Git
+import org.eclipse.jgit.dircache.DirCache
+import org.eclipse.jgit.lib.{FileMode, Constants}
+import profile.simple._
+
+trait RepositoryCreationService {
+  self: AccountService with RepositoryService with LabelsService with WikiService with ActivityService =>
+
+  def createRepository(loginAccount: Account, owner: String, name: String, description: Option[String], isPrivate: Boolean, createReadme: Boolean)
+                      (implicit s: Session) {
+    val ownerAccount  = getAccountByUserName(owner).get
+    val loginUserName = loginAccount.userName
+
+    // Insert to the database at first
+    insertRepository(name, owner, description, isPrivate)
+
+    // Add collaborators for group repository
+    if(ownerAccount.groupAccount){
+      getGroupMembers(owner).foreach { member =>
+        addCollaborator(owner, name, member.userName)
+      }
+    }
+
+    // Insert default labels
+    insertDefaultLabels(owner, name)
+
+    // Create the actual repository
+    val gitdir = getRepositoryDir(owner, name)
+    JGitUtil.initRepository(gitdir)
+
+    if(createReadme){
+      using(Git.open(gitdir)){ git =>
+        val builder  = DirCache.newInCore.builder()
+        val inserter = git.getRepository.newObjectInserter()
+        val headId   = git.getRepository.resolve(Constants.HEAD + "^{commit}")
+        val content  = if(description.nonEmpty){
+          name + "\n" +
+            "===============\n" +
+            "\n" +
+            description.get
+        } else {
+          name + "\n" +
+            "===============\n"
+        }
+
+        builder.add(JGitUtil.createDirCacheEntry("README.md", FileMode.REGULAR_FILE,
+          inserter.insert(Constants.OBJ_BLOB, content.getBytes("UTF-8"))))
+        builder.finish()
+
+        JGitUtil.createNewCommit(git, inserter, headId, builder.getDirCache.writeTree(inserter),
+          Constants.HEAD, loginAccount.fullName, loginAccount.mailAddress, "Initial commit")
+      }
+    }
+
+    // Create Wiki repository
+    createWikiRepository(loginAccount, owner, name)
+
+    // Record activity
+    recordCreateRepositoryActivity(owner, name, loginUserName)
+  }
+
+  def insertDefaultLabels(userName: String, repositoryName: String)(implicit s: Session): Unit = {
+    createLabel(userName, repositoryName, "bug", "fc2929")
+    createLabel(userName, repositoryName, "duplicate", "cccccc")
+    createLabel(userName, repositoryName, "enhancement", "84b6eb")
+    createLabel(userName, repositoryName, "invalid", "e6e6e6")
+    createLabel(userName, repositoryName, "question", "cc317c")
+    createLabel(userName, repositoryName, "wontfix", "ffffff")
+  }
+
+
+}

src/main/scala/gitbucket/core/service/RepositoryService.scala

@@ -1,5 +1,6 @@
 package gitbucket.core.service
 
+import gitbucket.core.controller.Context
 import gitbucket.core.model.{Collaborator, Repository, Account}
 import gitbucket.core.model.Profile._
 import gitbucket.core.util.JGitUtil
@@ -18,7 +19,7 @@ trait RepositoryService { self: AccountService =>
    * @param originRepositoryName specify for the forked repository. (default is None)
    * @param originUserName specify for the forked repository. (default is None)
    */
-  def createRepository(repositoryName: String, userName: String, description: Option[String], isPrivate: Boolean,
+  def insertRepository(repositoryName: String, userName: String, description: Option[String], isPrivate: Boolean,
                        originRepositoryName: Option[String] = None, originUserName: Option[String] = None,
                        parentRepositoryName: Option[String] = None, parentUserName: Option[String] = None)
                       (implicit s: Session): Unit = {
@@ -26,7 +27,7 @@ trait RepositoryService { self: AccountService =>
       Repository(
         userName             = userName,
         repositoryName       = repositoryName,
-        isPrivate            = isPrivate,
+        `private`            = isPrivate,
         description          = description,
         defaultBranch        = "master",
         registeredDate       = currentDate,
@@ -114,7 +115,7 @@ trait RepositoryService { self: AccountService =>
           repositoryName = newRepositoryName
         )) :_*)
 
-        if(account.isGroupAccount){
+        if(account.groupAccount){
           Collaborators.insertAll(getGroupMembers(newUserName).map(m => Collaborator(newUserName, newRepositoryName, m.userName)) :_*)
         } else {
           Collaborators.insertAll(collaborators.map(_.copy(userName = newUserName, repositoryName = newRepositoryName)) :_*)
@@ -194,10 +195,9 @@ trait RepositoryService { self: AccountService =>
    * 
    * @param userName the user name of the repository owner
    * @param repositoryName the repository name
-   * @param baseUrl the base url of this application
    * @return the repository information
    */
-  def getRepository(userName: String, repositoryName: String, baseUrl: String)(implicit s: Session): Option[RepositoryInfo] = {
+  def getRepository(userName: String, repositoryName: String)(implicit s: Session): Option[RepositoryInfo] = {
     (Repositories filter { t => t.byRepository(userName, repositoryName) } firstOption) map { repository =>
       // for getting issue count and pull request count
       val issues = Issues.filter { t =>
@@ -205,7 +205,7 @@ trait RepositoryService { self: AccountService =>
       }.map(_.pullRequest).list
 
       new RepositoryInfo(
-        JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName, baseUrl),
+        JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName),
         repository,
         issues.count(_ == false),
         issues.count(_ == true),
@@ -234,7 +234,7 @@ trait RepositoryService { self: AccountService =>
     }.list
   }
 
-  def getUserRepositories(userName: String, baseUrl: String, withoutPhysicalInfo: Boolean = false)
+  def getUserRepositories(userName: String, withoutPhysicalInfo: Boolean = false)
                          (implicit s: Session): List[RepositoryInfo] = {
     Repositories.filter { t1 =>
       (t1.userName === userName.bind) ||
@@ -242,9 +242,9 @@ trait RepositoryService { self: AccountService =>
     }.sortBy(_.lastActivityDate desc).list.map{ repository =>
       new RepositoryInfo(
         if(withoutPhysicalInfo){
-          new JGitUtil.RepositoryInfo(repository.userName, repository.repositoryName, baseUrl)
+          new JGitUtil.RepositoryInfo(repository.userName, repository.repositoryName)
         } else {
-          JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName, baseUrl)
+          JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName)
         },
         repository,
         getForkedCount(
@@ -260,20 +260,19 @@ trait RepositoryService { self: AccountService =>
    * If repositoryUserName is given then filters results by repository owner.
    *
    * @param loginAccount the logged in account
-   * @param baseUrl the base url of this application
    * @param repositoryUserName the repository owner (if None then returns all repositories which are visible for logged in user)
    * @param withoutPhysicalInfo if true then the result does not include physical repository information such as commit count,
    *                            branches and tags
    * @return the repository information which is sorted in descending order of lastActivityDate.
    */
-  def getVisibleRepositories(loginAccount: Option[Account], baseUrl: String, repositoryUserName: Option[String] = None,
+  def getVisibleRepositories(loginAccount: Option[Account], repositoryUserName: Option[String] = None,
                              withoutPhysicalInfo: Boolean = false)
                             (implicit s: Session): List[RepositoryInfo] = {
     (loginAccount match {
       // for Administrators
-      case Some(x) if(x.isAdmin) => Repositories
+      case Some(x) if(x.administrator) => Repositories
       // for Normal Users
-      case Some(x) if(!x.isAdmin) =>
+      case Some(x) if(!x.administrator) =>
         Repositories filter { t => (t.isPrivate === false.bind) || (t.userName === x.userName) ||
           (Collaborators.filter { t2 => t2.byRepository(t.userName, t.repositoryName) && (t2.collaboratorName === x.userName.bind)} exists)
         }
@@ -284,9 +283,9 @@ trait RepositoryService { self: AccountService =>
     }.sortBy(_.lastActivityDate desc).list.map{ repository =>
       new RepositoryInfo(
         if(withoutPhysicalInfo){
-          new JGitUtil.RepositoryInfo(repository.userName, repository.repositoryName, baseUrl)
+          new JGitUtil.RepositoryInfo(repository.userName, repository.repositoryName)
         } else {
-          JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName, baseUrl)
+          JGitUtil.getRepositoryInfo(repository.userName, repository.repositoryName)
         },
         repository,
         getForkedCount(
@@ -298,8 +297,8 @@ trait RepositoryService { self: AccountService =>
   }
 
   private def getRepositoryManagers(userName: String)(implicit s: Session): Seq[String] =
-    if(getAccountByUserName(userName).exists(_.isGroupAccount)){
-      getGroupMembers(userName).collect { case x if(x.isManager) => x.userName }
+    if(getAccountByUserName(userName).exists(_.groupAccount)){
+      getGroupMembers(userName).collect { case x if(x.manager) => x.userName }
     } else {
       Seq(userName)
     }
@@ -366,7 +365,7 @@ trait RepositoryService { self: AccountService =>
 
   def hasWritePermission(owner: String, repository: String, loginAccount: Option[Account])(implicit s: Session): Boolean = {
     loginAccount match {
-      case Some(a) if(a.isAdmin) => true
+      case Some(a) if(a.administrator) => true
       case Some(a) if(a.userName == owner) => true
       case Some(a) if(getCollaborators(owner, repository).contains(a.userName)) => true
       case _ => false
@@ -389,32 +388,39 @@ trait RepositoryService { self: AccountService =>
 
 object RepositoryService {
 
-  case class RepositoryInfo(owner: String, name: String, httpUrl: String, repository: Repository,
+  case class RepositoryInfo(owner: String, name: String, repository: Repository,
     issueCount: Int, pullCount: Int, commitCount: Int, forkedCount: Int,
-    branchList: Seq[String], tags: Seq[JGitUtil.TagInfo], managers: Seq[String]){
-
-    lazy val host = """^https?://(.+?)(:\d+)?/""".r.findFirstMatchIn(httpUrl).get.group(1)
-
-    def sshUrl(port: Int, userName: String) = s"ssh://${userName}@${host}:${port}/${owner}/${name}.git"
-
-    def sshOpenRepoUrl(platform: String, port: Int, userName: String) = openRepoUrl(platform, sshUrl(port, userName))
-
-    def httpOpenRepoUrl(platform: String) = openRepoUrl(platform, httpUrl)
-
-    def openRepoUrl(platform: String, openUrl: String) = s"github-${platform}://openRepo/${openUrl}"
+    branchList: Seq[String], tags: Seq[JGitUtil.TagInfo], managers: Seq[String]) {
 
     /**
      * Creates instance with issue count and pull request count.
      */
     def this(repo: JGitUtil.RepositoryInfo, model: Repository, issueCount: Int, pullCount: Int, forkedCount: Int, managers: Seq[String]) =
-      this(repo.owner, repo.name, repo.url, model, issueCount, pullCount, repo.commitCount, forkedCount, repo.branchList, repo.tags, managers)
+      this(
+        repo.owner, repo.name, model,
+        issueCount, pullCount, repo.commitCount, forkedCount,
+        repo.branchList, repo.tags, managers)
 
     /**
      * Creates instance without issue count and pull request count.
      */
-    def this(repo: JGitUtil.RepositoryInfo, model: Repository, forkedCount: Int, managers: Seq[String]) =
-      this(repo.owner, repo.name, repo.url, model, 0, 0, repo.commitCount, forkedCount, repo.branchList, repo.tags, managers)
+    def this(repo: JGitUtil.RepositoryInfo, model: Repository, 	forkedCount: Int, managers: Seq[String]) =
+      this(
+        repo.owner, repo.name, model,
+        0, 0, repo.commitCount, forkedCount,
+        repo.branchList, repo.tags, managers)
+
+    def httpUrl(implicit context: Context): String = RepositoryService.httpUrl(owner, name)
+    def sshUrl(implicit context: Context): Option[String] = RepositoryService.sshUrl(owner, name)
   }
 
-  case class RepositoryTreeNode(owner: String, name: String, children: List[RepositoryTreeNode])
+  def httpUrl(owner: String, name: String)(implicit context: Context): String = s"${context.baseUrl}/git/${owner}/${name}.git"
+  def sshUrl(owner: String, name: String)(implicit context: Context): Option[String] =
+    if(context.settings.ssh){
+      context.loginAccount.flatMap { loginAccount =>
+        context.settings.sshAddress.map { x => s"ssh://${loginAccount.userName}@${x.host}:${x.port}/${owner}/${name}.git" }
+      }
+    } else None
+  def openRepoUrl(openUrl: String)(implicit context: Context): String = s"github-${context.platform}://openRepo/${openUrl}"
+
 }

src/main/scala/gitbucket/core/service/SystemSettingsService.scala

@@ -1,6 +1,7 @@
 package gitbucket.core.service
 
 import gitbucket.core.util.{Directory, ControlUtil}
+import gitbucket.core.util.Implicits._
 import Directory._
 import ControlUtil._
 import SystemSettingsService._
@@ -21,6 +22,7 @@ trait SystemSettingsService {
       props.setProperty(Notification, settings.notification.toString)
       settings.activityLogLimit.foreach(x => props.setProperty(ActivityLogLimit, x.toString))
       props.setProperty(Ssh, settings.ssh.toString)
+      settings.sshHost.foreach(x => props.setProperty(SshHost, x.trim))
       settings.sshPort.foreach(x => props.setProperty(SshPort, x.toString))
       props.setProperty(UseSMTP, settings.useSMTP.toString)
       if(settings.useSMTP) {
@@ -75,6 +77,7 @@ trait SystemSettingsService {
         getValue(props, Notification, false),
         getOptionValue[Int](props, ActivityLogLimit, None),
         getValue(props, Ssh, false),
+        getOptionValue[String](props, SshHost, None).map(_.trim),
         getOptionValue(props, SshPort, Some(DefaultSshPort)),
         getValue(props, UseSMTP, getValue(props, Notification, false)),   // handle migration scenario from only notification to useSMTP
         if(getValue(props, UseSMTP, getValue(props, Notification, false))){
@@ -126,16 +129,19 @@ object SystemSettingsService {
     notification: Boolean,
     activityLogLimit: Option[Int],
     ssh: Boolean,
+    sshHost: Option[String],
     sshPort: Option[Int],
     useSMTP: Boolean,
     smtp: Option[Smtp],
     ldapAuthentication: Boolean,
     ldap: Option[Ldap]){
-    def baseUrl(request: HttpServletRequest): String = baseUrl.getOrElse {
-      defining(request.getRequestURL.toString){ url =>
-        url.substring(0, url.length - (request.getRequestURI.length - request.getContextPath.length))
+    def baseUrl(request: HttpServletRequest): String = baseUrl.fold(request.baseUrl)(_.stripSuffix("/"))
+
+    def sshAddress:Option[SshAddress] =
+      for {
+        host <- sshHost if ssh
       }
-    }.stripSuffix("/")
+      yield SshAddress(host, sshPort.getOrElse(DefaultSshPort))
   }
 
   case class Ldap(
@@ -161,6 +167,10 @@ object SystemSettingsService {
     fromAddress: Option[String],
     fromName: Option[String])
 
+  case class SshAddress(
+    host:String,
+    port:Int)
+
   val DefaultSshPort = 29418
   val DefaultSmtpPort = 25
   val DefaultLdapPort = 389
@@ -174,6 +184,7 @@ object SystemSettingsService {
   private val Notification = "notification"
   private val ActivityLogLimit = "activity_log_limit"
   private val Ssh = "ssh"
+  private val SshHost = "ssh.host"
   private val SshPort = "ssh.port"
   private val UseSMTP = "useSMTP"
   private val SmtpHost = "smtp.host"
@@ -216,7 +227,4 @@ object SystemSettingsService {
       else value
     }
 
-//  // TODO temporary flag
-//  val enablePluginSystem = Option(System.getProperty("enable.plugin")).getOrElse("false").toBoolean
-
 }

src/main/scala/gitbucket/core/service/WebHookService.scala

@@ -1,8 +1,13 @@
 package gitbucket.core.service
 
+import java.io.ByteArrayInputStream
+
+import fr.brouillard.oss.security.xhub.XHub
+import fr.brouillard.oss.security.xhub.XHub.{XHubDigest, XHubConverter}
 import gitbucket.core.api._
 import gitbucket.core.model.{WebHook, Account, Issue, PullRequest, IssueComment, WebHookEvent, CommitComment}
 import gitbucket.core.model.Profile._
+import org.apache.http.client.utils.URLEncodedUtils
 import profile.simple._
 import gitbucket.core.util.JGitUtil.CommitInfo
 import gitbucket.core.util.RepositoryName
@@ -33,8 +38,11 @@ trait WebHookService {
 
   /** get All WebHook informations of repository event */
   def getWebHooksByEvent(owner: String, repository: String, event: WebHook.Event)(implicit s: Session): List[WebHook] =
-    WebHookEvents.filter(t => t.byRepository(owner, repository) && t.event === event.bind)
-      .list.map(t => WebHook(t.userName, t.repositoryName, t.url))
+     WebHooks.filter(_.byRepository(owner, repository))
+       .innerJoin(WebHookEvents).on { (wh, whe) => whe.byWebHook(wh) }
+       .filter{ case (wh, whe) => whe.event === event.bind}
+       .map{ case (wh, whe) => wh }
+       .list.distinct
 
   /** get All WebHook information from repository to url */
   def getWebHook(owner: String, repository: String, url: String)(implicit s: Session): Option[(WebHook, Set[WebHook.Event])] =
@@ -44,14 +52,15 @@ trait WebHookService {
       .map{ case (w,t) => w -> t.event }
       .list.groupBy(_._1).mapValues(_.map(_._2).toSet).headOption
 
-  def addWebHook(owner: String, repository: String, url :String, events: Set[WebHook.Event])(implicit s: Session): Unit = {
-    WebHooks insert WebHook(owner, repository, url)
+  def addWebHook(owner: String, repository: String, url :String, events: Set[WebHook.Event], token: Option[String])(implicit s: Session): Unit = {
+    WebHooks insert WebHook(owner, repository, url, token)
     events.toSet.map{ event: WebHook.Event =>
       WebHookEvents insert WebHookEvent(owner, repository, url, event)
     }
   }
 
-  def updateWebHook(owner: String, repository: String, url :String, events: Set[WebHook.Event])(implicit s: Session): Unit = {
+  def updateWebHook(owner: String, repository: String, url :String, events: Set[WebHook.Event], token: Option[String])(implicit s: Session): Unit = {
+    WebHooks.filter(_.byPrimaryKey(owner, repository, url)).map(w => w.token).update(token)
     WebHookEvents.filter(_.byWebHook(owner, repository, url)).delete
     events.toSet.map{ event: WebHook.Event =>
       WebHookEvents insert WebHookEvent(owner, repository, url, event)
@@ -69,17 +78,17 @@ trait WebHookService {
     }
   }
 
-  def callWebHook(event: WebHook.Event, webHookURLs: List[WebHook], payload: WebHookPayload)
+  def callWebHook(event: WebHook.Event, webHooks: List[WebHook], payload: WebHookPayload)
                  (implicit c: JsonFormat.Context): List[(WebHook, String, Future[HttpRequest], Future[HttpResponse])] = {
     import org.apache.http.impl.client.HttpClientBuilder
     import ExecutionContext.Implicits.global
     import org.apache.http.protocol.HttpContext
     import org.apache.http.client.methods.HttpPost
 
-    if(webHookURLs.nonEmpty){
+    if(webHooks.nonEmpty){
       val json = JsonFormat(payload)
 
-      webHookURLs.map { webHookUrl =>
+      webHooks.map { webHook =>
         val reqPromise = Promise[HttpRequest]
         val f = Future {
           val itcp = new org.apache.http.HttpRequestInterceptor{
@@ -89,19 +98,26 @@ trait WebHookService {
           }
           try{
             val httpClient = HttpClientBuilder.create.addInterceptorLast(itcp).build
-            logger.debug(s"start web hook invocation for ${webHookUrl.url}")
-            val httpPost = new HttpPost(webHookUrl.url)
+            logger.debug(s"start web hook invocation for ${webHook.url}")
+            val httpPost = new HttpPost(webHook.url)
             httpPost.addHeader("Content-Type", "application/x-www-form-urlencoded")
             httpPost.addHeader("X-Github-Event", event.name)
             httpPost.addHeader("X-Github-Delivery", java.util.UUID.randomUUID().toString)
 
             val params: java.util.List[NameValuePair] = new java.util.ArrayList()
             params.add(new BasicNameValuePair("payload", json))
-            httpPost.setEntity(new UrlEncodedFormEntity(params, "UTF-8"))
+            def postContent = new UrlEncodedFormEntity(params, "UTF-8")
+            httpPost.setEntity(postContent)
+
+            if (!webHook.token.isEmpty) {
+              // TODO find a better way and see how to extract content from postContent
+              val contentAsBytes = URLEncodedUtils.format(params, "UTF-8").getBytes("UTF-8")
+              httpPost.addHeader("X-Hub-Signature", XHub.generateHeaderXHubToken(XHubConverter.HEXA_LOWERCASE, XHubDigest.SHA1, webHook.token.orNull, contentAsBytes))
+            }
 
             val res = httpClient.execute(httpPost)
             httpPost.releaseConnection()
-            logger.debug(s"end web hook invocation for ${webHookUrl}")
+            logger.debug(s"end web hook invocation for ${webHook}")
             res
           }catch{
             case e:Throwable => {
@@ -113,12 +129,12 @@ trait WebHookService {
           }
         }
         f.onSuccess {
-          case s => logger.debug(s"Success: web hook request to ${webHookUrl.url}")
+          case s => logger.debug(s"Success: web hook request to ${webHook.url}")
         }
         f.onFailure {
-          case t => logger.error(s"Failed: web hook request to ${webHookUrl.url}", t)
+          case t => logger.error(s"Failed: web hook request to ${webHook.url}", t)
         }
-        (webHookUrl, json, reqPromise.future, f)
+        (webHook, json, reqPromise.future, f)
       }
     } else {
       Nil
@@ -161,7 +177,7 @@ trait WebHookPullRequestService extends WebHookService {
         baseOwner <- users.get(repository.owner)
         headOwner <- users.get(pullRequest.requestUserName)
         issueUser <- users.get(issue.openedUserName)
-        headRepo  <- getRepository(pullRequest.requestUserName, pullRequest.requestRepositoryName, baseUrl)
+        headRepo  <- getRepository(pullRequest.requestUserName, pullRequest.requestRepositoryName)
       } yield {
         WebHookPullRequestPayload(
           action         = action,
@@ -200,7 +216,7 @@ trait WebHookPullRequestService extends WebHookService {
     import WebHookService._
     for{
       ((issue, issueUser, pullRequest, baseOwner, headOwner), webHooks) <- getPullRequestsByRequestForWebhook(requestRepository.owner, requestRepository.name, requestBranch)
-      baseRepo <- getRepository(pullRequest.userName, pullRequest.repositoryName, baseUrl)
+      baseRepo <- getRepository(pullRequest.userName, pullRequest.repositoryName)
     } yield {
       val payload = WebHookPullRequestPayload(
         action         = action,
@@ -229,7 +245,7 @@ trait WebHookPullRequestReviewCommentService extends WebHookService {
         baseOwner <- users.get(repository.owner)
         headOwner <- users.get(pullRequest.requestUserName)
         issueUser <- users.get(issue.openedUserName)
-        headRepo  <- getRepository(pullRequest.requestUserName, pullRequest.requestRepositoryName, baseUrl)
+        headRepo  <- getRepository(pullRequest.requestUserName, pullRequest.requestRepositoryName)
       } yield {
         WebHookPullRequestReviewCommentPayload(
           action         = action,

src/main/scala/gitbucket/core/service/WikiService.scala

@@ -1,7 +1,9 @@
 package gitbucket.core.service
 
 import java.util.Date
+import gitbucket.core.controller.Context
 import gitbucket.core.model.Account
+import gitbucket.core.service.RepositoryService.RepositoryInfo
 import gitbucket.core.util._
 import gitbucket.core.util.ControlUtil._
 import org.eclipse.jgit.api.Git
@@ -13,7 +15,6 @@ import java.io.ByteArrayInputStream
 import org.eclipse.jgit.patch._
 import org.eclipse.jgit.api.errors.PatchFormatException
 import scala.collection.JavaConverters._
-import RepositoryService.RepositoryInfo
 
 object WikiService {
   
@@ -38,10 +39,13 @@ object WikiService {
    */
   case class WikiPageHistoryInfo(name: String, committer: String, message: String, date: Date)
 
-  def httpUrl(repository: RepositoryInfo) = repository.httpUrl.replaceFirst("\\.git\\Z", ".wiki.git")
 
-  def sshUrl(repository: RepositoryInfo, settings: SystemSettingsService.SystemSettings, userName: String) =
-    repository.sshUrl(settings.sshPort.getOrElse(SystemSettingsService.DefaultSshPort), userName).replaceFirst("\\.git\\Z", ".wiki.git")
+  def wikiHttpUrl(repositoryInfo: RepositoryInfo)(implicit context: Context): String
+    = RepositoryService.httpUrl(repositoryInfo.owner, repositoryInfo.name + ".wiki")
+
+  def wikiSshUrl(repositoryInfo: RepositoryInfo)(implicit context: Context): Option[String]
+    = RepositoryService.sshUrl(repositoryInfo.owner, repositoryInfo.name + ".wiki")
+
 }
 
 trait WikiService {

src/main/scala/gitbucket/core/servlet/AutoUpdate.scala

@@ -21,6 +21,8 @@ object AutoUpdate {
    * The history of versions. A head of this sequence is the current GitBucket version.
    */
   val versions = Seq(
+    new Version(3, 13),
+    new Version(3, 12),
     new Version(3, 11),
     new Version(3, 10),
     new Version(3, 9),

src/main/scala/gitbucket/core/servlet/BasicAuthenticationFilter.scala

@@ -74,16 +74,16 @@ class BasicAuthenticationFilter extends Filter with RepositoryService with Accou
 
     request.paths match {
       case Array(_, repositoryOwner, repositoryName, _*) =>
-        getRepository(repositoryOwner, repositoryName.replaceFirst("\\.wiki\\.git$|\\.git$", ""), "") match {
+        getRepository(repositoryOwner, repositoryName.replaceFirst("\\.wiki\\.git$|\\.git$", "")) match {
           case Some(repository) => {
-            if(!isUpdating && !repository.repository.isPrivate && settings.allowAnonymousAccess){
+            if(!isUpdating && !repository.repository.`private` && settings.allowAnonymousAccess){
               chain.doFilter(request, response)
             } else {
               val passed = for {
                 auth <- Option(request.getHeader("Authorization"))
                 Array(username, password) = decodeAuthHeader(auth).split(":", 2)
                 account <- authenticate(settings, username, password)
-              } yield if(isUpdating || repository.repository.isPrivate){
+              } yield if(isUpdating || repository.repository.`private`){
                   if(hasWritePermission(repository.owner, repository.name, Some(account))){
                     request.setAttribute(Keys.Request.UserName, account.userName)
                     true

src/main/scala/gitbucket/core/servlet/GitRepositoryServlet.scala

@@ -10,7 +10,6 @@ import gitbucket.core.service.WebHookService._
 import gitbucket.core.service._
 import gitbucket.core.util.ControlUtil._
 import gitbucket.core.util.Implicits._
-import gitbucket.core.util.JGitUtil.CommitInfo
 import gitbucket.core.util._
 
 import org.eclipse.jgit.api.Git
@@ -160,7 +159,7 @@ class CommitLogHook(owner: String, repository: String, pusher: String, baseUrl:
             countIssue(IssueSearchCondition(state = "open"), false, owner -> repository) +
             countIssue(IssueSearchCondition(state = "closed"), false, owner -> repository)
 
-          val repositoryInfo = getRepository(owner, repository, baseUrl).get
+          val repositoryInfo = getRepository(owner, repository).get
 
           // Extract new commit and apply issue comment
           val defaultBranch = repositoryInfo.repository.defaultBranch
@@ -168,7 +167,7 @@ class CommitLogHook(owner: String, repository: String, pusher: String, baseUrl:
             if (!existIds.contains(commit.id) && !pushedIds.contains(commit.id)) {
               if (issueCount > 0) {
                 pushedIds.add(commit.id)
-                createIssueComment(commit)
+                createIssueComment(owner, repository, commit)
                 // close issues
                 if(refName(1) == "heads" && branchName == defaultBranch && command.getType == ReceiveCommand.Type.UPDATE){
                   closeIssuesFromMessage(commit.fullMessage, pusher, owner, repository)
@@ -230,13 +229,4 @@ class CommitLogHook(owner: String, repository: String, pusher: String, baseUrl:
     }
   }
 
-  private def createIssueComment(commit: CommitInfo) = {
-    StringUtil.extractIssueId(commit.fullMessage).foreach { issueId =>
-      if(getIssue(owner, repository, issueId).isDefined){
-        getAccountByMailAddress(commit.committerEmailAddress).foreach { account =>
-          createComment(owner, repository, account.userName, issueId.toInt, commit.fullMessage + " " + commit.id, "commit")
-        }
-      }
-    }
-  }
 }

src/main/scala/gitbucket/core/servlet/TransactionFilter.scala

@@ -4,10 +4,14 @@ import javax.servlet._
 import javax.servlet.http.HttpServletRequest
 import com.mchange.v2.c3p0.ComboPooledDataSource
 import gitbucket.core.util.DatabaseConfig
+import io.getquill._
+import io.getquill.naming.SnakeCase
+import io.getquill.sources.sql.idiom.H2Dialect
 import org.scalatra.ScalatraBase
 import org.slf4j.LoggerFactory
 import slick.jdbc.JdbcBackend.{Database => SlickDatabase, Session}
 import gitbucket.core.util.Keys
+import Database._
 
 /**
  * Controls the transaction with the open session in view pattern.
@@ -25,17 +29,20 @@ class TransactionFilter extends Filter {
       // assets don't need transaction
       chain.doFilter(req, res)
     } else {
-      Database() withTransaction { session =>
-        // Register Scalatra error callback to rollback transaction
-        ScalatraBase.onFailure { _ =>
-          logger.debug("Rolled back transaction")
-          session.rollback()
-        }(req.asInstanceOf[HttpServletRequest])
+      db.transaction {
+        // TODO Delete after moving to quill
+        Database() withTransaction { session =>
+          // Register Scalatra error callback to rollback transaction
+          ScalatraBase.onFailure { _ =>
+            logger.debug("Rolled back transaction")
+            session.rollback()
+          }(req.asInstanceOf[HttpServletRequest])
 
-        logger.debug("begin transaction")
-        req.setAttribute(Keys.Request.DBSession, session)
-        chain.doFilter(req, res)
-        logger.debug("end transaction")
+          logger.debug("begin transaction")
+          req.setAttribute(Keys.Request.DBSession, session)
+          chain.doFilter(req, res)
+          logger.debug("end transaction")
+        }
       }
     }
   }
@@ -46,6 +53,9 @@ object Database {
 
   private val logger = LoggerFactory.getLogger(Database.getClass)
 
+  lazy val db = source(new JdbcSourceConfig[H2Dialect, SnakeCase]("db"))
+
+  // TODO Delete after moving to quill
   private val dataSource: ComboPooledDataSource = {
     val ds = new ComboPooledDataSource
     ds.setDriverClass(DatabaseConfig.driver)
@@ -56,15 +66,19 @@ object Database {
     ds
   }
 
-  private val db: SlickDatabase = {
+  // TODO Delete after moving to quill
+  private val slickDatabase: SlickDatabase = {
     SlickDatabase.forDataSource(dataSource)
   }
 
-  def apply(): SlickDatabase = db
+  // TODO Delete after moving to quill
+  def apply(): SlickDatabase = slickDatabase
 
+  // TODO Delete after moving to quill
   def getSession(req: ServletRequest): Session =
     req.getAttribute(Keys.Request.DBSession).asInstanceOf[Session]
 
+  // TODO Delete after moving to quill
   def closeDataSource(): Unit = dataSource.close
 
 }

src/main/scala/gitbucket/core/ssh/GitCommand.scala

@@ -87,12 +87,12 @@ abstract class DefaultGitCommand(val owner: String, val repoName: String) extend
 }
 
 
-class DefaultGitUploadPack(owner: String, repoName: String, baseUrl: String) extends DefaultGitCommand(owner, repoName)
+class DefaultGitUploadPack(owner: String, repoName: String) extends DefaultGitCommand(owner, repoName)
     with RepositoryService with AccountService {
 
   override protected def runTask(user: String)(implicit session: Session): Unit = {
-    getRepository(owner, repoName.replaceFirst("\\.wiki\\Z", ""), baseUrl).foreach { repositoryInfo =>
-      if(!repositoryInfo.repository.isPrivate || isWritableUser(user, repositoryInfo)){
+    getRepository(owner, repoName.replaceFirst("\\.wiki\\Z", "")).foreach { repositoryInfo =>
+      if(!repositoryInfo.repository.`private` || isWritableUser(user, repositoryInfo)){
         using(Git.open(getRepositoryDir(owner, repoName))) { git =>
           val repository = git.getRepository
           val upload = new UploadPack(repository)
@@ -107,7 +107,7 @@ class DefaultGitReceivePack(owner: String, repoName: String, baseUrl: String) ex
     with RepositoryService with AccountService {
 
   override protected def runTask(user: String)(implicit session: Session): Unit = {
-    getRepository(owner, repoName.replaceFirst("\\.wiki\\Z", ""), baseUrl).foreach { repositoryInfo =>
+    getRepository(owner, repoName.replaceFirst("\\.wiki\\Z", "")).foreach { repositoryInfo =>
       if(isWritableUser(user, repositoryInfo)){
         using(Git.open(getRepositoryDir(owner, repoName))) { git =>
           val repository = git.getRepository
@@ -124,7 +124,7 @@ class DefaultGitReceivePack(owner: String, repoName: String, baseUrl: String) ex
   }
 }
 
-class PluginGitUploadPack(repoName: String, baseUrl: String, routing: GitRepositoryRouting) extends GitCommand
+class PluginGitUploadPack(repoName: String, routing: GitRepositoryRouting) extends GitCommand
     with SystemSettingsService {
 
   override protected def runTask(user: String)(implicit session: Session): Unit = {
@@ -139,7 +139,7 @@ class PluginGitUploadPack(repoName: String, baseUrl: String, routing: GitReposit
   }
 }
 
-class PluginGitReceivePack(repoName: String, baseUrl: String, routing: GitRepositoryRouting) extends GitCommand
+class PluginGitReceivePack(repoName: String, routing: GitRepositoryRouting) extends GitCommand
     with SystemSettingsService {
 
   override protected def runTask(user: String)(implicit session: Session): Unit = {
@@ -163,9 +163,9 @@ class GitCommandFactory(baseUrl: String) extends CommandFactory {
     logger.debug(s"command: $command")
 
     command match {
-      case SimpleCommandRegex ("upload" , repoName) if(pluginRepository(repoName)) => new PluginGitUploadPack (repoName, baseUrl, routing(repoName))
-      case SimpleCommandRegex ("receive", repoName) if(pluginRepository(repoName)) => new PluginGitReceivePack(repoName, baseUrl, routing(repoName))
-      case DefaultCommandRegex("upload" , owner, repoName) => new DefaultGitUploadPack (owner, repoName, baseUrl)
+      case SimpleCommandRegex ("upload" , repoName) if(pluginRepository(repoName)) => new PluginGitUploadPack (repoName, routing(repoName))
+      case SimpleCommandRegex ("receive", repoName) if(pluginRepository(repoName)) => new PluginGitReceivePack(repoName, routing(repoName))
+      case DefaultCommandRegex("upload" , owner, repoName) => new DefaultGitUploadPack (owner, repoName)
       case DefaultCommandRegex("receive", owner, repoName) => new DefaultGitReceivePack(owner, repoName, baseUrl)
       case _ => new UnknownCommand(command)
     }

src/main/scala/gitbucket/core/ssh/NoShell.scala

@@ -1,12 +1,13 @@
 package gitbucket.core.ssh
 
 import gitbucket.core.service.SystemSettingsService
+import gitbucket.core.service.SystemSettingsService.SshAddress
 import org.apache.sshd.common.Factory
 import org.apache.sshd.server.{Environment, ExitCallback, Command}
 import java.io.{OutputStream, InputStream}
 import org.eclipse.jgit.lib.Constants
 
-class NoShell extends Factory[Command] with SystemSettingsService {
+class NoShell(sshAddress:SshAddress) extends Factory[Command] {
   override def create(): Command = new Command() {
     private var in: InputStream = null
     private var out: OutputStream = null
@@ -15,7 +16,6 @@ class NoShell extends Factory[Command] with SystemSettingsService {
 
     override def start(env: Environment): Unit = {
       val user = env.getEnv.get("USER")
-      val port = loadSystemSettings().sshPort.getOrElse(SystemSettingsService.DefaultSshPort)
       val message =
         """
           | Welcome to
@@ -31,8 +31,8 @@ class NoShell extends Factory[Command] with SystemSettingsService {
           |
           | Please use:
           |
-          | git clone ssh://%s@GITBUCKET_HOST:%d/OWNER/REPOSITORY_NAME.git
-        """.stripMargin.format(user, port).replace("\n", "\r\n") + "\r\n"
+          | git clone ssh://%s@%s:%d/OWNER/REPOSITORY_NAME.git
+        """.stripMargin.format(user, sshAddress.host, sshAddress.port).replace("\n", "\r\n") + "\r\n"
       err.write(Constants.encode(message))
       err.flush()
       in.close()

src/main/scala/gitbucket/core/ssh/SshServerListener.scala

@@ -5,7 +5,8 @@ import java.util.concurrent.atomic.AtomicBoolean
 import javax.servlet.{ServletContextEvent, ServletContextListener}
 
 import gitbucket.core.service.SystemSettingsService
-import gitbucket.core.util.Directory
+import gitbucket.core.service.SystemSettingsService.SshAddress
+import gitbucket.core.util.{Directory}
 import org.apache.sshd.server.keyprovider.SimpleGeneratorHostKeyProvider
 import org.slf4j.LoggerFactory
 
@@ -14,20 +15,20 @@ object SshServer {
   private val server = org.apache.sshd.server.SshServer.setUpDefaultServer()
   private val active = new AtomicBoolean(false)
 
-  private def configure(port: Int, baseUrl: String) = {
-    server.setPort(port)
+  private def configure(sshAddress: SshAddress, baseUrl: String) = {
+    server.setPort(sshAddress.port)
     val provider = new SimpleGeneratorHostKeyProvider(new File(s"${Directory.GitBucketHome}/gitbucket.ser"))
     provider.setAlgorithm("RSA")
     provider.setOverwriteAllowed(false)
     server.setKeyPairProvider(provider)
     server.setPublickeyAuthenticator(new PublicKeyAuthenticator)
     server.setCommandFactory(new GitCommandFactory(baseUrl))
-    server.setShellFactory(new NoShell)
+    server.setShellFactory(new NoShell(sshAddress))
   }
 
-  def start(port: Int, baseUrl: String) = {
+  def start(sshAddress: SshAddress, baseUrl: String) = {
     if(active.compareAndSet(false, true)){
-      configure(port, baseUrl)
+      configure(sshAddress, baseUrl)
       server.start()
       logger.info(s"Start SSH Server Listen on ${server.getPort}")
     }
@@ -55,20 +56,18 @@ class SshServerListener extends ServletContextListener with SystemSettingsServic
 
   override def contextInitialized(sce: ServletContextEvent): Unit = {
     val settings = loadSystemSettings()
-    if(settings.ssh){
-      settings.baseUrl match {
-        case None =>
-          logger.error("Could not start SshServer because the baseUrl is not configured.")
-        case Some(baseUrl) =>
-          SshServer.start(settings.sshPort.getOrElse(SystemSettingsService.DefaultSshPort), baseUrl)
-      }
+    if (settings.sshAddress.isDefined && settings.baseUrl.isEmpty) {
+    	logger.error("Could not start SshServer because the baseUrl is not configured.")
     }
+    for {
+      sshAddress <- settings.sshAddress
+      baseUrl    <- settings.baseUrl
+    }
+    SshServer.start(sshAddress, baseUrl)
   }
 
   override def contextDestroyed(sce: ServletContextEvent): Unit = {
-    if(loadSystemSettings().ssh){
-      SshServer.stop()
-    }
+    SshServer.stop()
   }
 
 }

src/main/scala/gitbucket/core/util/Authenticator.scala

@@ -17,7 +17,7 @@ trait OneselfAuthenticator { self: ControllerBase =>
     {
       defining(request.paths){ paths =>
         context.loginAccount match {
-          case Some(x) if(x.isAdmin) => action
+          case Some(x) if(x.administrator) => action
           case Some(x) if(paths(0) == x.userName) => action
           case _ => Unauthorized()
         }
@@ -36,12 +36,12 @@ trait OwnerAuthenticator { self: ControllerBase with RepositoryService with Acco
   private def authenticate(action: (RepositoryInfo) => Any) = {
     {
       defining(request.paths){ paths =>
-        getRepository(paths(0), paths(1), baseUrl).map { repository =>
+        getRepository(paths(0), paths(1)).map { repository =>
           context.loginAccount match {
-            case Some(x) if(x.isAdmin) => action(repository)
+            case Some(x) if(x.administrator) => action(repository)
             case Some(x) if(repository.owner == x.userName) => action(repository)
             case Some(x) if(getGroupMembers(repository.owner).exists { member =>
-              member.userName == x.userName && member.isManager == true
+              member.userName == x.userName && member.manager == true
             }) => action(repository)
             case _ => Unauthorized()
           }
@@ -78,7 +78,7 @@ trait AdminAuthenticator { self: ControllerBase =>
   private def authenticate(action: => Any) = {
     {
       context.loginAccount match {
-        case Some(x) if(x.isAdmin) => action
+        case Some(x) if(x.administrator) => action
         case _ => Unauthorized()
       }
     }
@@ -95,9 +95,9 @@ trait CollaboratorsAuthenticator { self: ControllerBase with RepositoryService =
   private def authenticate(action: (RepositoryInfo) => Any) = {
     {
       defining(request.paths){ paths =>
-        getRepository(paths(0), paths(1), baseUrl).map { repository =>
+        getRepository(paths(0), paths(1)).map { repository =>
           context.loginAccount match {
-            case Some(x) if(x.isAdmin) => action(repository)
+            case Some(x) if(x.administrator) => action(repository)
             case Some(x) if(paths(0) == x.userName) => action(repository)
             case Some(x) if(getCollaborators(paths(0), paths(1)).contains(x.userName)) => action(repository)
             case _ => Unauthorized()
@@ -118,12 +118,12 @@ trait ReferrerAuthenticator { self: ControllerBase with RepositoryService =>
   private def authenticate(action: (RepositoryInfo) => Any) = {
     {
       defining(request.paths){ paths =>
-        getRepository(paths(0), paths(1), baseUrl).map { repository =>
-          if(!repository.repository.isPrivate){
+        getRepository(paths(0), paths(1)).map { repository =>
+          if(!repository.repository.`private`){
             action(repository)
           } else {
             context.loginAccount match {
-              case Some(x) if(x.isAdmin) => action(repository)
+              case Some(x) if(x.administrator) => action(repository)
               case Some(x) if(paths(0) == x.userName) => action(repository)
               case Some(x) if(getCollaborators(paths(0), paths(1)).contains(x.userName)) => action(repository)
               case _ => Unauthorized()
@@ -145,10 +145,10 @@ trait ReadableUsersAuthenticator { self: ControllerBase with RepositoryService =
   private def authenticate(action: (RepositoryInfo) => Any) = {
     {
       defining(request.paths){ paths =>
-        getRepository(paths(0), paths(1), baseUrl).map { repository =>
+        getRepository(paths(0), paths(1)).map { repository =>
           context.loginAccount match {
-            case Some(x) if(x.isAdmin) => action(repository)
-            case Some(x) if(!repository.repository.isPrivate) => action(repository)
+            case Some(x) if(x.administrator) => action(repository)
+            case Some(x) if(!repository.repository.`private`) => action(repository)
             case Some(x) if(paths(0) == x.userName) => action(repository)
             case Some(x) if(getCollaborators(paths(0), paths(1)).contains(x.userName)) => action(repository)
             case _ => Unauthorized()
@@ -171,7 +171,7 @@ trait GroupManagerAuthenticator { self: ControllerBase with AccountService =>
       defining(request.paths){ paths =>
         context.loginAccount match {
           case Some(x) if(getGroupMembers(paths(0)).exists { member =>
-            member.userName == x.userName && member.isManager
+            member.userName == x.userName && member.manager
           }) => action
           case _ => Unauthorized()
         }

src/main/scala/gitbucket/core/util/Implicits.scala

@@ -75,6 +75,11 @@ object Implicits {
 
     def gitRepositoryPath: String = request.getRequestURI.replaceFirst("^/git/", "/")
 
+    def baseUrl:String = {
+      val url = request.getRequestURL.toString
+      val len = url.length - (request.getRequestURI.length - request.getContextPath.length)
+      url.substring(0, len).stripSuffix("/")
+    }
   }
 
   implicit class RichSession(session: HttpSession){

src/main/scala/gitbucket/core/util/JGitUtil.scala

@@ -32,14 +32,13 @@ object JGitUtil {
    *
    * @param owner the user name of the repository owner
    * @param name the repository name
-   * @param url the repository URL
    * @param commitCount the commit count. If the repository has over 1000 commits then this property is 1001.
    * @param branchList the list of branch names
    * @param tags the list of tags
    */
-  case class RepositoryInfo(owner: String, name: String, url: String, commitCount: Int, branchList: List[String], tags: List[TagInfo]){
-    def this(owner: String, name: String, baseUrl: String) = {
-      this(owner, name, s"${baseUrl}/git/${owner}/${name}.git", 0, Nil, Nil)
+  case class RepositoryInfo(owner: String, name: String, commitCount: Int, branchList: List[String], tags: List[TagInfo]){
+    def this(owner: String, name: String) = {
+      this(owner, name, 0, Nil, Nil)
     }
   }
 
@@ -174,14 +173,14 @@ object JGitUtil {
   /**
    * Returns the repository information. It contains branch names and tag names.
    */
-  def getRepositoryInfo(owner: String, repository: String, baseUrl: String): RepositoryInfo = {
+  def getRepositoryInfo(owner: String, repository: String): RepositoryInfo = {
     using(Git.open(getRepositoryDir(owner, repository))){ git =>
       try {
         // get commit count
         val commitCount = git.log.all.call.iterator.asScala.map(_ => 1).take(10001).sum
 
         RepositoryInfo(
-          owner, repository, s"${baseUrl}/git/${owner}/${repository}.git",
+          owner, repository,
           // commit count
           commitCount,
           // branches
@@ -197,7 +196,7 @@ object JGitUtil {
       } catch {
         // not initialized
         case e: NoHeadException => RepositoryInfo(
-          owner, repository, s"${baseUrl}/git/${owner}/${repository}.git", 0, Nil, Nil)
+          owner, repository, 0, Nil, Nil)
 
       }
     }

src/main/scala/gitbucket/core/util/Notifier.scala

@@ -30,7 +30,7 @@ trait Notifier extends RepositoryService with AccountService with IssuesService
     )
     .distinct
     .withFilter ( _ != context.loginAccount.get.userName )  // the operation in person is excluded
-    .foreach ( getAccountByUserName(_) filterNot (_.isGroupAccount) filterNot (LDAPUtil.isDummyMailAddress(_)) foreach (x => notify(x.mailAddress)) )
+    .foreach ( getAccountByUserName(_) filterNot (_.groupAccount) filterNot (LDAPUtil.isDummyMailAddress(_)) foreach (x => notify(x.mailAddress)) )
 
 }
 

src/main/scala/gitbucket/core/view/helpers.scala

@@ -9,7 +9,7 @@ import gitbucket.core.plugin.{RenderRequest, PluginRegistry}
 import gitbucket.core.service.{RepositoryService, RequestCache}
 import gitbucket.core.util.{FileUtil, JGitUtil, StringUtil}
 
-import play.twirl.api.Html
+import play.twirl.api.{Html, HtmlFormat}
 
 /**
  * Provides helper methods for Twirl templates.
@@ -225,6 +225,13 @@ object helpers extends AvatarImageProvider with LinkConverter with RequestCache
   def avatarLink(userName: String, size: Int, mailAddress: String = "", tooltip: Boolean = false)(implicit context: Context): Html =
     userWithContent(userName, mailAddress)(avatar(userName, size, tooltip, mailAddress))
 
+  /**
+    * Generates the avatar link to the account page.
+    * If user does not exist or disabled, this method returns avatar image without link.
+    */
+  def avatarLink(commit: JGitUtil.CommitInfo, size: Int)(implicit context: Context): Html =
+    userWithContent(commit.authorName, commit.authorEmailAddress)(avatar(commit, size))
+
   private def userWithContent(userName: String, mailAddress: String = "", styleClass: String = "")(content: Html)(implicit context: Context): Html =
     (if(mailAddress.isEmpty){
       getAccountByUserName(userName)
@@ -306,6 +313,19 @@ object helpers extends AvatarImageProvider with LinkConverter with RequestCache
   private[this] val detectAndRenderLinksRegex = """(?i)\b((?:https?://|www\d{0,3}[.]|[a-z0-9.\-]+[.][a-z]{2,13}/)(?:[^\s()<>]+|\(([^\s()<>]+|(\([^\s()<>]+\)))*\))+(?:\(([^\s()<>]+|(\([^\s()<>]+\)))*\)|[^\s`!()\[\]{};:'".,<>?«»“”‘’]))""".r
 
   def detectAndRenderLinks(text: String): Html = {
-    Html(detectAndRenderLinksRegex.replaceAllIn(text, m => s"""<a href="${m.group(0)}">${m.group(0)}</a>"""))
+    val matches = detectAndRenderLinksRegex.findAllMatchIn(text).toSeq
+
+    val (x, pos) = matches.foldLeft((collection.immutable.Seq.empty[Html], 0)){ case ((x, pos), m) =>
+      val url  = m.group(0)
+      val href = url.replace("\"", "&quot;")
+      (x ++ (Seq(
+        if(pos < m.start) Some(HtmlFormat.escape(text.substring(pos, m.start))) else None,
+        Some(Html(s"""<a href="${href}">${url}</a>"""))
+      ).flatten), m.end)
+    }
+    // append rest fragment
+    val out = if (pos < text.length) x :+ HtmlFormat.escape(text.substring(pos)) else x
+
+    HtmlFormat.fill(out)
   }
 }

src/main/twirl/gitbucket/core/account/application.scala.html

@@ -4,7 +4,7 @@
 @import context._
 @import gitbucket.core.view.helpers._
 @html.main("Applications"){
-<div class="container">
+<div class="container body">
   <div class="row">
     <div class="col-md-3">
       @menu("application", settings.ssh)
@@ -16,24 +16,27 @@
           @if(personalTokens.isEmpty && gneratedToken.isEmpty){
             No tokens.
           } else {
-            Tokens you have generated that can be used to access the GitBucket API.<hr>
+            Tokens you have generated that can be used to access the GitBucket API.
+            <hr style="margin-top: 10px;">
           }
           @gneratedToken.map{ case (token, tokenString) =>
             <div class="alert alert-info">
               Make sure to copy your new personal access token now. You won't be able to see it again!
             </div>
-            @helper.html.copy("generated-token-copy", tokenString){
-              <input type="text" value="@tokenString" style="width:21em" readonly>
-            }
-            <a href="@path/@account.userName/_personalToken/delete/@token.accessTokenId" class="btn btn-mini btn-danger pull-right">Delete</a>
-            <hr>
+            <a href="@path/@account.userName/_personalToken/delete/@token.accessTokenId" class="btn btn-sm btn-danger pull-right">Delete</a>
+            <div style="width: 50%;">
+              @helper.html.copy("generated-token-copy", tokenString){
+                <input type="text" value="@tokenString" class="form-control input-sm" readonly>
+              }
+            </div>
+            <hr style="margin-top: 10px;">
           }
           @personalTokens.zipWithIndex.map { case (token, i) =>
             @if(i != 0){
-              <hr>
+              <hr style="margin-top: 10px;">
             }
             <strong>@token.note</strong>
-            <a href="@path/@account.userName/_personalToken/delete/@token.accessTokenId" class="btn btn-mini btn-danger pull-right">Delete</a>
+            <a href="@path/@account.userName/_personalToken/delete/@token.accessTokenId" class="btn btn-sm btn-danger pull-right">Delete</a>
           }
         </div>
       </div>
@@ -44,7 +47,7 @@
             <fieldset>
               <label for="note" class="strong">Token description</label>
               <div><span id="error-note" class="error"></span></div>
-              <input type="text" name="note" id="note" class="form-control" style="width: 400px;"/>
+              <input type="text" name="note" id="note" class="form-control"/>
               <p class="muted">What's this token for?</p>
             </fieldset>
             <input type="submit" class="btn btn-success" value="Generate token"/>

src/main/twirl/gitbucket/core/account/edit.scala.html

@@ -3,7 +3,7 @@
 @import context._
 @import gitbucket.core.view.helpers._
 @html.main("Edit your profile"){
-<div class="container">
+<div class="container body">
   <div class="row">
     <div class="col-md-3">
       @menu("profile", settings.ssh)

src/main/twirl/gitbucket/core/account/group.scala.html

@@ -2,7 +2,7 @@
 @import context._
 @import gitbucket.core.view.helpers._
 @html.main(if(account.isEmpty) "Create group" else "Edit group"){
-<div class="container">
+<div class="container body">
   <form id="form" method="post" action="@if(account.isEmpty){@path/groups/new} else {@path/@account.get.userName/_editgroup}" validate="true">
       <div class="row">
         <div class="col-md-5">
@@ -32,7 +32,7 @@
             </ul>
             @helper.html.account("memberName", 200)
             <input type="button" class="btn btn-default" value="Add" id="addMember"/>
-            <input type="hidden" id="members" name="members" value="@members.map(member => member.userName + ":" + member.isManager).mkString(",")"/>
+            <input type="hidden" id="members" name="members" value="@members.map(member => member.userName + ":" + member.manager).mkString(",")"/>
             <div>
               <span class="error" id="error-members"></span>
             </div>
@@ -103,7 +103,7 @@ $(function(){
   });
 
   @members.map { member =>
-    addMemberHTML('@member.userName', @member.isManager);
+    addMemberHTML('@member.userName', @member.manager);
   }
 
   function addMemberHTML(userName, isManager){

src/main/twirl/gitbucket/core/account/main.scala.html

@@ -3,7 +3,7 @@
 @import context._
 @import gitbucket.core.view.helpers._
 @html.main(account.userName){
-  <div class="container">
+  <div class="container body">
     <div class="container-fluid">
       <div class="row">
         <div class="col-md-4">
@@ -22,7 +22,7 @@
             <div>
               <div>Groups</div>
               @groupNames.map { groupName =>
-                <a href="@url(groupName)">@avatar(groupName, 36, tooltip = true)</a>
+                @avatarLink(groupName, 36, tooltip = true)
               }
             </div>
           }
@@ -31,7 +31,7 @@
         <div class="col-md-8">
           <ul class="nav nav-tabs" style="margin-bottom: 5px;">
             <li@if(active == "repositories"){ class="active"}><a href="@url(account.userName)?tab=repositories">Repositories</a></li>
-            @if(account.isGroupAccount){
+            @if(account.groupAccount){
               <li@if(active == "members"){ class="active"}><a href="@url(account.userName)?tab=members">Members</a></li>
             } else {
               <li@if(active == "activity"){ class="active"}><a href="@url(account.userName)?tab=activity">Public Activity</a></li>
@@ -43,9 +43,9 @@
                 </div>
               </li>
             }
-            @if(loginAccount.isDefined && account.isGroupAccount && isGroupManager){
+            @if(loginAccount.isDefined && account.groupAccount && isGroupManager){
               <li class="pull-right">
-                <div class="button-group">
+                <div class="button-groRepiosup">
                   <a href="@url(account.userName)/_editgroup" class="btn btn-default">Edit Group</a>
                 </div>
               </li>

src/main/twirl/gitbucket/core/account/newrepo.scala.html

@@ -3,7 +3,7 @@ isCreateRepoOptionPublic: Boolean)(implicit context: gitbucket.core.controller.C
 @import context._
 @import gitbucket.core.view.helpers._
 @html.main("Create a New Repository"){
-<div style="width: 600px; margin: 10px auto;">
+<div class="body" style="width: 600px; margin: 10px auto;">
   <h2>Create a new repository</h2>
   <p class="muted">
     A repository contains all the files for your project, including the revision history.

src/main/twirl/gitbucket/core/account/register.scala.html

@@ -2,7 +2,7 @@
 @import context._
 @import gitbucket.core.view.helpers._
 @html.main("Create your account"){
-<div class="container">
+<div class="container body">
   <h3>Create your account</h3>
   <form action="@path/register" method="POST" validate="true">
     <div class="row">

src/main/twirl/gitbucket/core/account/repositories.scala.html

@@ -15,7 +15,7 @@
         <div class="repository-content">
           <div class="block-header">
             <a href="@url(repository)">@repository.name</a>
-            @if(repository.repository.isPrivate){
+            @if(repository.repository.`private`){
               <i class="octicon octicon-lock"></i>
             }
           </div>

src/main/twirl/gitbucket/core/account/ssh.scala.html

@@ -3,7 +3,7 @@
 @import context._
 @import gitbucket.core.view.helpers._
 @html.main("SSH Keys"){
-<div class="container">
+<div class="container body">
   <div class="row">
     <div class="col-md-3">
       @menu("ssh", settings.ssh)
@@ -17,10 +17,10 @@
           }
           @sshKeys.zipWithIndex.map { case (key, i) =>
             @if(i != 0){
-              <hr>
+              <hr style="margin-top: 10px;">
             }
             <strong>@key.title</strong> (@SshUtil.fingerPrint(key.publicKey).getOrElse("Key is invalid."))
-            <a href="@path/@account.userName/_ssh/delete/@key.sshKeyId" class="btn btn-mini btn-danger pull-right">Delete</a>
+            <a href="@path/@account.userName/_ssh/delete/@key.sshKeyId" class="btn btn-sm btn-danger pull-right">Delete</a>
           }
         </div>
       </div>
@@ -31,12 +31,12 @@
             <fieldset class="form-group">
               <label for="title" class="strong">Title</label>
               <div><span id="error-title" class="error"></span></div>
-              <input type="text" name="title" id="title" class="form-control" style="width: 400px;"/>
+              <input type="text" name="title" id="title" class="form-control"/>
             </fieldset>
             <fieldset class="form-group">
               <label for="publicKey" class="strong">Key</label>
               <div><span id="error-publicKey" class="error"></span></div>
-              <textarea name="publicKey" id="publicKey" class="form-control" style="width: 600px; height: 250px;"></textarea>
+              <textarea name="publicKey" id="publicKey" class="form-control" style="height: 250px;"></textarea>
             </fieldset>
             <input type="submit" class="btn btn-success" value="Add"/>
           </div>

src/main/twirl/gitbucket/core/admin/menu.scala.html

@@ -11,7 +11,7 @@
           <a href="@path/admin/system">System Settings</a>
         </li>
         <li@if(active=="plugins"){ class="active"}>
-        <a href="@path/admin/plugins">Plugins</a>
+          <a href="@path/admin/plugins">Plugins</a>
         </li>
         <li>
           <a href="@path/console/login.jsp">H2 Console</a>

src/main/twirl/gitbucket/core/admin/system.scala.html

@@ -111,15 +111,24 @@
               Enable SSH access to git repository
             </label>
           </fieldset>
-          <div class="form-group ssh">
-            <label class="control-label col-md-3" for="sshPort">SSH Port</label>
-            <div class="col-md-9">
-              <input type="text" id="sshPort" name="sshPort" class="form-control" value="@settings.sshPort"/>
-              <span id="error-sshPort" class="error"></span>
+          <div class="ssh">
+            <div class="form-group">
+              <label class="control-label col-md-3" for="sshHost">SSH Host</label>
+              <div class="col-md-9">
+                <input type="text" id="sshHost" name="sshHost" class="form-control" value="@settings.sshHost"/>
+                <span id="error-sshHost" class="error"></span>
+              </div>
+            </div>
+            <div class="form-group">
+              <label class="control-label col-md-3" for="sshPort">SSH Port</label>
+              <div class="col-md-9">
+                <input type="text" id="sshPort" name="sshPort" class="form-control" value="@settings.sshPort"/>
+                <span id="error-sshPort" class="error"></span>
+              </div>
             </div>
           </div>
           <p class="muted">
-            Base URL is required if SSH access is enabled.
+             Both of SSH host and Base URL are required if SSH access is enabled.
           </p>
           <!--====================================================================-->
           <!-- Authentication -->

src/main/twirl/gitbucket/core/admin/user.scala.html

@@ -13,7 +13,7 @@
             <input type="text" name="userName" id="userName" class="form-control" value="@account.map(_.userName)"@if(account.isDefined){ readonly}/>
             @if(account.isDefined){
               <label for="removed">
-                <input type="checkbox" name="removed" id="removed" value="true" @if(account.get.isRemoved){checked}/>
+                <input type="checkbox" name="removed" id="removed" value="true" @if(account.get.removed){checked}/>
                 Disable
               </label>
               <div>
@@ -53,10 +53,10 @@
           <fieldset class="form-group">
             <label class="strong">User Type:</label>
             <label class="radio" for="userType_Normal">
-              <input type="radio" name="isAdmin" id="userType_Normal" value="false"@if(account.isEmpty || !account.get.isAdmin){ checked}/> Normal
+              <input type="radio" name="isAdmin" id="userType_Normal" value="false"@if(account.isEmpty || !account.get.administrator){ checked}/> Normal
             </label>
             <label class="radio" for="userType_Admin">
-              <input type="radio" name="isAdmin" id="userType_Admin" value="true"@if(account.isDefined && account.get.isAdmin){ checked}/> Administrator
+              <input type="radio" name="isAdmin" id="userType_Admin" value="true"@if(account.isDefined && account.get.administrator){ checked}/> Administrator
             </label>
           </fieldset>
           <fieldset class="form-group">

src/main/twirl/gitbucket/core/admin/usergroup.scala.html

@@ -14,7 +14,7 @@
             <input type="text" name="groupName" id="groupName" class="form-control" value="@account.map(_.userName)"@if(account.isDefined){ readonly}/>
             @if(account.isDefined){
               <label for="removed">
-                <input type="checkbox" name="removed" id="removed" value="true" @if(account.get.isRemoved){checked}/>
+                <input type="checkbox" name="removed" id="removed" value="true" @if(account.get.removed){checked}/>
                 Disable
               </label>
             }
@@ -38,7 +38,7 @@
             </ul>
             @helper.html.account("memberName", 200)
             <input type="button" class="btn btn-default" value="Add" id="addMember"/>
-            <input type="hidden" id="members" name="members" value="@members.map(member => member.userName + ":" + member.isManager).mkString(",")"/>
+            <input type="hidden" id="members" name="members" value="@members.map(member => member.userName + ":" + member.manager).mkString(",")"/>
             <div>
               <span class="error" id="error-members"></span>
             </div>
@@ -98,7 +98,7 @@ $(function(){
   });
 
   @members.map { member =>
-    addMemberHTML('@member.userName', @member.isManager);
+    addMemberHTML('@member.userName', @member.manager);
   }
 
   function addMemberHTML(userName, isManager){

src/main/twirl/gitbucket/core/admin/userlist.scala.html

@@ -14,9 +14,9 @@
     <table class="table table-bordered table-hover">
       @users.map { account =>
         <tr>
-          <td @if(account.isRemoved){style="background-color: #dddddd;"}>
+          <td @if(account.removed){style="background-color: #dddddd;"}>
             <div class="pull-right">
-              @if(account.isGroupAccount){
+              @if(account.groupAccount){
                 <a href="@path/admin/users/@account.userName/_editgroup">Edit</a>
               } else {
                 <a href="@path/admin/users/@account.userName/_edituser">Edit</a>
@@ -25,16 +25,16 @@
             <div class="strong">
               @avatar(account.userName, 20)
               <a href="@url(account.userName)">@account.userName</a>
-              @if(account.isGroupAccount){
+              @if(account.groupAccount){
                 (Group)
               } else {
-                @if(account.isAdmin){
+                @if(account.administrator){
                   (Administrator)
                 } else {
                   (Normal)
                 }
               }
-              @if(account.isGroupAccount){
+              @if(account.groupAccount){
                 @members(account.userName).map { userName =>
                   @avatar(userName, 20, tooltip = true)
                 }
@@ -42,7 +42,7 @@
             </div>
             <div>
               <hr>
-              @if(!account.isGroupAccount){
+              @if(!account.groupAccount){
                 <i class="octicon octicon-mail"></i> @account.mailAddress
               }
               @account.url.map { url =>
@@ -52,7 +52,7 @@
             <div>
               <span class="muted">Registered:</span> @datetime(account.registeredDate)
               <span class="muted">Updated:</span> @datetime(account.updatedDate)
-              @if(!account.isGroupAccount){
+              @if(!account.groupAccount){
                 <span class="muted">Last Login:</span> @account.lastLoginDate.map(datetime)
               }
             </div>

src/main/twirl/gitbucket/core/dashboard/issues.scala.html

@@ -8,9 +8,11 @@
 @import context._
 @import gitbucket.core.view.helpers._
 @html.main("Issues"){
-  @dashboard.html.tab("issues")
-  <div class="container">
-    @issuesnavi(filter, "issues", condition)
-    @issueslist(issues, page, openCount, closedCount, condition, filter, groups)
+  <div class="body">
+    @dashboard.html.tab("issues")
+    <div class="container">
+      @issuesnavi(filter, "issues", condition)
+      @issueslist(issues, page, openCount, closedCount, condition, filter, groups)
+    </div>
   </div>
 }

src/main/twirl/gitbucket/core/dashboard/pulls.scala.html

@@ -8,9 +8,11 @@
 @import context._
 @import gitbucket.core.view.helpers._
 @html.main("Pull Requests"){
-  @dashboard.html.tab("pulls")
-  <div class="container">
-    @issuesnavi(filter, "pulls", condition)
-    @issueslist(issues, page, openCount, closedCount, condition, filter, groups)
+  <div class="body">
+    @dashboard.html.tab("pulls")
+    <div class="container">
+      @issuesnavi(filter, "pulls", condition)
+      @issueslist(issues, page, openCount, closedCount, condition, filter, groups)
+    </div>
   </div>
 }

src/main/twirl/gitbucket/core/helper/attached.scala.html

@@ -27,12 +27,6 @@ $(function(){
       throw e;
     }
   }
-
-  // Adjust clickable area width
-  $('#@textareaId').next('div.clickable').css({
-    'width': ($('#@textareaId').width() + 18) + 'px',
-    'font-size': '13px'
-  });
 });
 </script>
 }

src/main/twirl/gitbucket/core/helper/commitcomment.scala.html

@@ -10,8 +10,8 @@
     @if(comment.fileName.isDefined){filename="@comment.fileName.get"}
     @if(comment.newLine.isDefined){newline="@comment.newLine.get"}
     @if(comment.oldLine.isDefined){oldline="@comment.oldLine.get"}>
-  <div class="issue-avatar-image">@avatar(comment.commentedUserName, 48)</div>
-  <div class="panel- panel-default commit-comment-box commit-comment-@comment.commentId">
+  <div class="issue-avatar-image">@avatarLink(comment.commentedUserName, 48)</div>
+  <div class="panel panel-default commit-comment-box commit-comment-@comment.commentId">
     <div class="panel-heading">
       @user(comment.commentedUserName, styleClass="username strong")
         <span class="muted">

src/main/twirl/gitbucket/core/helper/copy.scala.html

@@ -1,8 +1,16 @@
-@(id: String, value: String, prepend: Boolean = false)(html: Html)
-<div class="input-group @if(prepend){input-prepend}" style="margin-bottom: 0px;">
-  @html
-  <span class="input-group-btn"><span id="@id" class="btn btn-sm btn-default" data-clipboard-text="@value" data-placement="bottom" title="copy to clipboard"><i class="octicon octicon-clippy"></i></span></span>
-</div>
+@(id: String, value: String, style: String = "")(html: Html = Html(""))
+@if(html.body.nonEmpty){
+  <div class="input-group" style="margin-bottom: 0px;">
+    @html
+    <span class="input-group-btn">
+      <span id="@id" class="btn btn-sm btn-default" @if(style.nonEmpty){style="@style"}
+        data-clipboard-text="@value" data-placement="bottom" title="copy to clipboard"><i class="octicon octicon-clippy"></i></span>
+    </span>
+  </div>
+} else {
+  <span id="@id" class="btn btn-sm btn-default" @if(style.nonEmpty){style="@style"}
+    data-clipboard-text="@value" data-placement="bottom" title="copy to clipboard"><i class="octicon octicon-clippy"></i></span>
+}
 <script>
 // copy to clipboard
 (function() {

src/main/twirl/gitbucket/core/helper/repositoryicon.scala.html

@@ -2,7 +2,7 @@
 @import gitbucket.core.service.RepositoryService
 @import context._
 @import gitbucket.core.view.helpers._
-@if(repository.repository.isPrivate){
+@if(repository.repository.`private`){
   <i class="@{if(large){"mega-"}}octicon octicon-lock"></i>
 } else {
   @if(repository.repository.originUserName.isDefined){

src/main/twirl/gitbucket/core/index.scala.html

@@ -4,79 +4,81 @@
 @import context._
 @import gitbucket.core.view.helpers._
 @main("GitBucket"){
-  @dashboard.html.tab()
-  <div class="container">
-    <div class="row">
-      <div class="col-md-8">
-        <div class="pull-right">
-          <a href="@path/activities.atom"><img src="@assets/common/images/feed.png" alt="activities"></a>
-        </div>
-        @helper.html.activities(activities)
-      </div>
-
-      <div class="col-md-4">
-        @settings.information.map { information =>
-          <div class="alert alert-info" style="background-color: white; color: #555; border-color: #4183c4; font-size: small; line-height: 120%;">
-            <button type="button" class="close" data-dismiss="alert">&times;</button>
-            @Html(information)
+  <div class="body">
+    @dashboard.html.tab()
+    <div class="container">
+      <div class="row">
+        <div class="col-md-8">
+          <div class="pull-right">
+            <a href="@path/activities.atom"><img src="@assets/common/images/feed.png" alt="activities"></a>
           </div>
-        }
-        @if(loginAccount.isEmpty){
-          @signinform(settings)
-        } else {
-          <div class="panel panel-default">
-            <div class="panel-heading strong">
-              <div class="pull-right">
-                <a href="@path/new" class="btn btn-success btn-sm">New repository</a>
-              </div>
-              Your repositories <span class="badge">@userRepositories.size</span>
+          @helper.html.activities(activities)
+        </div>
+
+        <div class="col-md-4">
+          @settings.information.map { information =>
+            <div class="alert alert-info" style="background-color: white; color: #555; border-color: #4183c4; font-size: small; line-height: 120%;">
+              <button type="button" class="close" data-dismiss="alert">&times;</button>
+              @Html(information)
             </div>
-            <ul class="list-group list-group-flush">
-              @if(userRepositories.isEmpty){
-                <li class="list-group-item">No repositories</li>
-              } else {
-                @defining(20){ max =>
-                  @userRepositories.zipWithIndex.map { case (repository, i) =>
-                    <li class="list-group-item repo-link" style="@if(i > max - 1){display:none;}">
-                      @helper.html.repositoryicon(repository, false)
-                      @if(repository.owner == loginAccount.get.userName){
-                        <a href="@url(repository)"><span class="strong">@repository.name</span></a>
-                      } else {
-                        <a href="@url(repository)">@repository.owner/<span class="strong">@repository.name</span></a>
-                      }
-                    </li>
-                  }
-                  @if(userRepositories.size > max){
-                    <li class="list-group-item show-more">
-                      <a href="javascript:void(0);" id="show-more-repos">Show @{userRepositories.size - max} more repositories...</a>
-                    </li>
+          }
+          @if(loginAccount.isEmpty){
+            <div id="dashboard-signin-form">@signinform(settings)</div>
+          } else {
+            <div class="panel panel-default">
+              <div class="panel-heading strong">
+                <div class="pull-right">
+                  <a href="@path/new" class="btn btn-success btn-sm">New repository</a>
+                </div>
+                Your repositories <span class="badge">@userRepositories.size</span>
+              </div>
+              <ul class="list-group list-group-flush">
+                @if(userRepositories.isEmpty){
+                  <li class="list-group-item">No repositories</li>
+                } else {
+                  @defining(20){ max =>
+                    @userRepositories.zipWithIndex.map { case (repository, i) =>
+                      <li class="list-group-item repo-link" style="@if(i > max - 1){display:none;}">
+                        @helper.html.repositoryicon(repository, false)
+                        @if(repository.owner == loginAccount.get.userName){
+                          <a href="@url(repository)"><span class="strong">@repository.name</span></a>
+                        } else {
+                          <a href="@url(repository)">@repository.owner/<span class="strong">@repository.name</span></a>
+                        }
+                      </li>
+                    }
+                    @if(userRepositories.size > max){
+                      <li class="list-group-item show-more">
+                        <a href="javascript:void(0);" id="show-more-repos">Show @{userRepositories.size - max} more repositories...</a>
+                      </li>
+                    }
                   }
                 }
-              }
-            </ul>
-          </div>
-        }
-        <div class="panel panel-default">
-          <div class="panel-heading strong">Recent updated repositories</div>
-          <ul class="list-group list-group-flush">
-          @if(recentRepositories.isEmpty){
-            <li class="list-group-item">No repositories</li>
-          } else {
-            @defining(20){ max =>
-              @recentRepositories.zipWithIndex.map { case (repository, i) =>
-                <li class="list-group-item repo-link" style="@if(i > max - 1){display:none;}">
-                  @helper.html.repositoryicon(repository, false)
-                  <a href="@url(repository)">@repository.owner/<span class="strong">@repository.name</span></a>
-                </li>
-              }
-              @if(recentRepositories.size > max){
-                <li class="list-group-item show-more">
-                  <a href="javascript:void(0);" id="show-more-recent-repos">Show @{recentRepositories.size - max} more repositories...</a>
-                </li>
+              </ul>
+            </div>
+          }
+          <div class="panel panel-default">
+            <div class="panel-heading strong">Recent updated repositories</div>
+            <ul class="list-group list-group-flush">
+            @if(recentRepositories.isEmpty){
+              <li class="list-group-item">No repositories</li>
+            } else {
+              @defining(20){ max =>
+                @recentRepositories.zipWithIndex.map { case (repository, i) =>
+                  <li class="list-group-item repo-link" style="@if(i > max - 1){display:none;}">
+                    @helper.html.repositoryicon(repository, false)
+                    <a href="@url(repository)">@repository.owner/<span class="strong">@repository.name</span></a>
+                  </li>
+                }
+                @if(recentRepositories.size > max){
+                  <li class="list-group-item show-more">
+                    <a href="javascript:void(0);" id="show-more-recent-repos">Show @{recentRepositories.size - max} more repositories...</a>
+                  </li>
+                }
               }
             }
-          }
-          </ul>
+            </ul>
+          </div>
         </div>
       </div>
     </div>

src/main/twirl/gitbucket/core/issues/commentform.scala.html

@@ -7,7 +7,7 @@
 @if(loginAccount.isDefined){
   <hr/><br/>
   <form method="POST" validate="true">
-    <div class="issue-avatar-image">@avatar(loginAccount.get.userName, 48)</div>
+    <div class="issue-avatar-image">@avatarLink(loginAccount.get.userName, 48)</div>
     <div class="panel panel-default issue-comment-box">
       <div class="panel-body">
         @helper.html.preview(

src/main/twirl/gitbucket/core/issues/commentlist.scala.html

@@ -7,7 +7,7 @@
 @import gitbucket.core.view.helpers._
 @import gitbucket.core.model.CommitComment
 @if(issue.isDefined){
-  <div class="issue-avatar-image">@avatar(issue.get.openedUserName, 48)</div>
+  <div class="issue-avatar-image">@avatarLink(issue.get.openedUserName, 48)</div>
   <div class="panel panel-default issue-comment-box">
     <div class="panel-heading">
       @user(issue.get.openedUserName, styleClass="username strong") <span class="muted">commented @helper.html.datetimeago(issue.get.registeredDate)</span>
@@ -36,7 +36,7 @@
   case comment: gitbucket.core.model.IssueComment => {
     @if(comment.action != "close" && comment.action != "reopen" && comment.action != "delete_branch"
       && comment.action != "commit" && comment.action != "refer"){
-      <div class="issue-avatar-image">@avatar(comment.commentedUserName, 48)</div>
+      <div class="issue-avatar-image">@avatarLink(comment.commentedUserName, 48)</div>
       <div class="panel panel-default issue-comment-box" id="comment-@comment.commentId">
         <div class="panel-heading">
           @user(comment.commentedUserName, styleClass="username strong")
@@ -138,7 +138,7 @@
           <span class="discussion-item-icon"><i class="octicon octicon-circle-slash"></i></span>
           @avatar(comment.commentedUserName, 16)
           @user(comment.commentedUserName, styleClass="username strong")
-          close @issueOrPullRequest()
+          closed this @issueOrPullRequest()
           @helper.html.datetimeago(comment.registeredDate)
         </div>
       </div>
@@ -210,7 +210,7 @@ $(function(){
   $(document).on('click', '.commit-comment-box i.octicon-pencil', function(){
     var id  = $(this).closest('a').data('comment-id');
     var url = '@url(repository)/commit_comments/_data/' + id;
-    var $content = $('.commit-commentContent-' + id, $(this).closest('.box'));
+    var $content = $('.commit-commentContent-' + id, $(this).closest('.commit-comment-box'));
 
     $.get(url,
     {

src/main/twirl/gitbucket/core/issues/create.scala.html

@@ -10,11 +10,11 @@
     <form action="@url(repository)/issues/new" method="POST" validate="true" class="form-group">
       <div class="row">
         <div class="col-md-10">
-          <div class="issue-avatar-image">@avatar(loginAccount.get.userName, 48)</div>
+          <div class="issue-avatar-image">@avatarLink(loginAccount.get.userName, 48)</div>
           <div class="panel panel-default issue-box">
             <div class="panel-body">
               <span id="error-title" class="error"></span>
-              <input type="text" name="title" class="form-control input-lg" value="" placeholder="Title" style="width: 680px;" autofocus/>
+              <input type="text" id="issue-title" name="title" class="form-control input-lg" value="" placeholder="Title" autofocus/>
               @helper.html.preview(
                 repository         = repository,
                 content            = "",
@@ -23,7 +23,7 @@
                 enableLineBreaks   = true,
                 enableTaskList     = true,
                 hasWritePermission = hasWritePermission,
-                style              = "width: 680px; height: 200px; max-height: 250px;",
+                style              = "height: 200px; max-height: 250px;",
                 elastic            = true
               )
               <div class="align-right">

src/main/twirl/gitbucket/core/issues/issueinfo.scala.html

@@ -49,7 +49,8 @@
               <div class="small" style="padding-left: 20px;">
                 @milestone.dueDate.map { dueDate =>
                   @if(isPast(dueDate)){
-                  <i class="octicon octicon-alert" style="color:#BD2C00;"></i><span class="milestone-alert">Due by @date(dueDate)</span>
+                    <i class="octicon octicon-alert" style="color:#BD2C00;"></i>
+                    <span class="milestone-alert">Due by @date(dueDate)</span>
                   } else {
                     <span class="muted">Due by @date(dueDate)</span>
                   }

src/main/twirl/gitbucket/core/issues/labels/edit.scala.html

@@ -11,7 +11,7 @@
       <span class="input-group-addon"><i style="background-color: #@label.map(_.color).getOrElse("888888");"></i></span>
     </div>
     <script>
-    $('div#label-color-@labelId').colorpicker();
+    $('div#label-color-@labelId').colorpicker({format: "hex"});
     </script>
     <span class="pull-right">
       <span id="label-error-@labelId" class="error"></span>

src/main/twirl/gitbucket/core/issues/milestones/list.scala.html

@@ -41,7 +41,8 @@
                     } else {
                       @milestone.dueDate.map { dueDate =>
                         @if(isPast(dueDate)){
-                          <i class="octicon octicon-alert" style="color:#BD2C00;"></i><span class="muted milestone-alert">Due by @date(dueDate)</span>
+                          <i class="octicon octicon-alert" style="color:#BD2C00;"></i>
+                          <span class="muted milestone-alert">Due by @date(dueDate)</span>
                         } else {
                           <span class="muted">Due by @date(dueDate)</span>
                         }

src/main/twirl/gitbucket/core/main.scala.html

@@ -36,7 +36,7 @@
     <script src="@assets/vendors/facebox/facebox.js"></script>
     <script src="@assets/vendors/jquery-hotkeys/jquery.hotkeys.js"></script>
     @repository.map { repository =>
-      @if(!repository.repository.isPrivate){
+      @if(!repository.repository.`private`){
         <meta name="go-import" content="@context.baseUrl.replaceFirst("^https?://", "")/@repository.owner/@repository.name git @repository.httpUrl" />
       }
     }
@@ -92,7 +92,7 @@
                 <ul class="dropdown-menu pull-right">
                   <li><a href="@url(loginAccount.get.userName)">Your profile</a></li>
                   <li><a href="@url(loginAccount.get.userName)/_edit">Account settings</a></li>
-                  @if(loginAccount.get.isAdmin){
+                  @if(loginAccount.get.administrator){
                     <li><a href="@path/admin/users">System administration</a></li>
                   }
                   <li><a href="@path/signout">Sign out</a></li>

src/main/twirl/gitbucket/core/menu.scala.html

@@ -1,30 +1,28 @@
 @(active: String,
   repository: gitbucket.core.service.RepositoryService.RepositoryInfo,
   id: Option[String] = None,
-  expand: Boolean = false,
+  isRepoTop: Boolean = false,
   isNoGroup: Boolean = true,
   info: Option[Any] = None,
   error: Option[Any] = None)(body: Html)(implicit context: gitbucket.core.controller.Context)
-@import gitbucket.core.service.SystemSettingsService
 @import context._
 @import gitbucket.core.view.helpers._
 
-@sidemenu(path: String, name: String, icon: String, label: String, count: Int = 0) = {
-  <li @if(active == name){class="active"} @if(!expand){data-toggle="tooltip" data-placement="left" data-original-title="@label"}>
+@menuitem(path: String, name: String, icon: String, label: String, count: Int = 0) = {
+  <li @if(active == name){class="active"}>
     <a href="@url(repository)@path">
-      <i class="menu-icon @if(active == name){menu-icon-active} octicon octicon-@{icon} "></i>
-      @if(expand){ @label}
-      @if(expand && count > 0){
-        <div class="pull-right"><span class="badge">@count</span></div>
+      <i class="menu-icon @if(active == name){menu-icon-active} octicon octicon-@{icon} "></i> <span class="pc">@label</span>
+      @if(count > 0){
+        <span class="badge">@count</span>
       }
     </a>
   </li>
 }
 
-<div class="container">
-  @helper.html.information(info)
-  @helper.html.error(error)
-  <div class="row">
+<div class="headbar">
+  <div class="container">
+    @helper.html.information(info)
+    @helper.html.error(error)
     <div class="head">
       @if(repository.commitCount > 0){
         <div class="input-group pull-right">
@@ -60,87 +58,52 @@
         }
       }
     </div>
+    <ul class="headmenu">
+      @menuitem(""       , "code"   , "code" , "Code")
+      @menuitem("/issues", "issues" , "issue-opened" , "Issues", repository.issueCount)
+      @menuitem("/pulls" , "pulls"  , "git-pull-request" , "Pull Requests", repository.pullCount)
+      @menuitem("/wiki"  , "wiki"   , "book"  , "Wiki")
+      @if(loginAccount.isDefined && (loginAccount.get.administrator || repository.managers.contains(loginAccount.get.userName))){
+        @menuitem("/settings" , "settings" , "tools", "Settings")
+      }
+    </ul>
   </div>
 </div>
-<hr style="margin-bottom: 20px;"/>
 <div class="container body">
-  <div style="width: @if(expand){170px} else {40px};" class="pull-right">
-    <ul class="sidemenu">
-      <li style="height: 12px"><div class="gradient pull-left" style="height: 12px"></div></li>
-      @sidemenu(""       , "code"   , "code" , "Code")
-      @sidemenu("/issues", "issues" , "issue-opened" , "Issues", repository.issueCount)
-      @sidemenu("/pulls" , "pulls"  , "git-pull-request" , "Pull Requests", repository.pullCount)
-      @sidemenu("/wiki"  , "wiki"   , "book"  , "Wiki")
-      @if(loginAccount.isDefined && (loginAccount.get.isAdmin || repository.managers.contains(loginAccount.get.userName))){
-        @sidemenu("/settings" , "settings" , "tools", "Settings")
-      }
-      <li style="height: 12px"><div class="gradient pull-left" style="height: 12px"></div></li>
-    </ul>
-    @if(expand){
-      <div class="small">
-        <strong id="repository-url-proto">HTTP</strong> <span class="mute">clone URL</span>
-      </div>
-      @helper.html.copy("repository-url-copy", repository.httpUrl){
-        <input type="text" value="@repository.httpUrl" id="repository-url" class="form-control input-sm" readonly>
-      }
-      @if(settings.ssh && loginAccount.isDefined){
-        <div class="small">
-          <span class="mute">You can clone <a href="javascript:void(0);" id="repository-url-http">HTTP</a> or <a href="javascript:void(0);" id="repository-url-ssh">SSH</a>.</span>
-        </div>
-      }
-      @id.map { id =>
-        @if(context.platform != "linux" && context.platform != null){
-        <div style="margin-top: 10px;">
-          <a href="@repository.httpOpenRepoUrl(context.platform)" id="repository-clone-url" class="btn btn-sm btn-default btn-block"><i class="octicon octicon-desktop-download"></i>&nbsp;&nbsp;Clone in Desktop</a>
-        </div>
-        }
-        <div style="margin-top: 10px;">
-          <a href="@{url(repository)}/archive/@{encodeRefName(id)}.zip" class="btn btn-sm btn-default btn-block"><i class="octicon octicon-cloud-download"></i>Download ZIP</a>
-        </div>
-        @*
-        <div style="margin-top: 10px;">
-          <a href="@{url(repository)}/archive/@{encodeRefName(id)}.tar.gz" class="btn btn-sm btn-default btn-block "><i class="octicon octicon-cloud-download"></i>Download TAR.GZ</a>
-        </div>
-        *@
-      }
+  @if(isRepoTop){
+    @repository.repository.description.map { description =>
+      <p class="description">@detectAndRenderLinks(description)</p>
     }
-  </div>
-  <div class="pull-left" style="width: @if(expand){770px} else {895px};">
-    @if(expand){
-      @repository.repository.description.map { description =>
-        <p class="description">@detectAndRenderLinks(description)</p>
-      }
-      <div style="margin-bottom: 10px; padding: 4px;" class="panel panel-default">
-        <table class="fill-width">
-          <tr>
-            <td style="width: 33%; text-align: center;">
-              <a href="@url(repository)/commits/@encodeRefName(id.getOrElse(""))" class="header-link">
-                <i class="octicon octicon-history"></i>
-                @if(repository.commitCount > 10000){
-                  <strong>10000+</strong> commits
-                } else {
-                  <strong>@repository.commitCount</strong> commits
-                }
-              </a>
-            </td>
-            <td style="width: 33%; text-align: center;">
-              <a href="@url(repository)/branches" class="header-link" class="header-link">
-                <i class="octicon octicon-git-branch"></i>
-                <strong>@repository.branchList.length</strong> branches
-              </a>
-            </td>
-            <td style="width: 33%; text-align: center;">
-              <a href="@url(repository)/tags" class="header-link" class="header-link">
-                <i class="octicon octicon-tag"></i>
-                <strong>@repository.tags.length</strong> releases
-              </a>
-            </td>
-          </tr>
-        </table>
-      </div>
-    }
-    @body
-  </div>
+    <div style="margin-bottom: 10px; padding: 4px;" class="panel panel-default">
+      <table class="fill-width">
+        <tr>
+          <td style="width: 33%; text-align: center;">
+            <a href="@url(repository)/commits/@encodeRefName(id.getOrElse(""))" class="header-link">
+              <i class="octicon octicon-history"></i>
+              @if(repository.commitCount > 10000){
+                <strong>10000+</strong> commits
+              } else {
+                <strong>@repository.commitCount</strong> commits
+              }
+            </a>
+          </td>
+          <td style="width: 33%; text-align: center;">
+            <a href="@url(repository)/branches" class="header-link" class="header-link">
+              <i class="octicon octicon-git-branch"></i>
+              <strong>@repository.branchList.length</strong> branches
+            </a>
+          </td>
+          <td style="width: 33%; text-align: center;">
+            <a href="@url(repository)/tags" class="header-link" class="header-link">
+              <i class="octicon octicon-tag"></i>
+              <strong>@repository.tags.length</strong> releases
+            </a>
+          </td>
+        </tr>
+      </table>
+    </div>
+  }
+  @body
 </div>
 <script>
 $(function(){
@@ -150,7 +113,7 @@ $(function(){
     if(e.target.tagName == "I"){
       target = e.target.parentElement;
     }
-    $(target).prev    ('div.gradient'        ).css('border-left', '1px solid silver');
+    $(target).prev('div.gradient').css('border-left', '1px solid silver');
   });
 
   $('ul.sidemenu a').mouseout(function(e){
@@ -158,7 +121,7 @@ $(function(){
     if(e.target.tagName == "I"){
       target = e.target.parentElement;
     }
-    $(target).prev    ('div.gradient'        ).css('border-left', '1px solid #eee');
+    $(target).prev('div.gradient').css('border-left', '1px solid #eee');
   });
 
   $('a[rel*=facebox]').facebox({
@@ -180,21 +143,5 @@ $(function(){
       $('#fork-form').submit();
     });
   }
-
-  @if(settings.ssh && loginAccount.isDefined){
-    $('#repository-url-http').click(function(){
-      $('#repository-url-proto').text('HTTP');
-      $('#repository-url').val('@repository.httpUrl');
-      $('#repository-clone-url').attr('href', '@repository.httpOpenRepoUrl(context.platform)')
-      $('#repository-url-copy').attr('data-clipboard-text', $('#repository-url').val());
-    });
-
-    $('#repository-url-ssh').click(function(){
-      $('#repository-url-proto').text('SSH');
-      $('#repository-url').val('@repository.sshUrl(settings.sshPort.getOrElse(SystemSettingsService.DefaultSshPort), loginAccount.get.userName)');
-      $('#repository-clone-url').attr('href', '@repository.sshOpenRepoUrl(context.platform, settings.sshPort.getOrElse(SystemSettingsService.DefaultSshPort), loginAccount.get.userName)');
-      $('#repository-url-copy').attr('data-clipboard-text', $('#repository-url').val());
-    });
-  }
 });
 </script>

src/main/twirl/gitbucket/core/pulls/commits.scala.html

@@ -17,7 +17,7 @@
             <li><a href="@url(repository)/tree/@commit.id" style="line-height: 16px;"><i class="octicon octicon-code link"></i></a></li>
           </ul>
           <div>
-            <div class="commit-avatar-image">@avatar(commit, 40)</div>
+            <div class="commit-avatar-image">@avatarLink(commit, 40)</div>
             <div>
               <a href="@url(repository)/commit/@commit.id" class="commit-message" style="font-weight: bold;">@link(commit.summary, repository)</a>
               @if(commit.description.isDefined){

src/main/twirl/gitbucket/core/pulls/compare.scala.html

@@ -55,11 +55,11 @@
         <form method="POST" action="@path/@originRepository.owner/@originRepository.name/pulls/new" validate="true">
           <div class="row">
             <div class="col-md-10">
-              <div class="issue-avatar-image">@avatar(loginAccount.get.userName, 48)</div>
+              <div class="issue-avatar-image">@avatarLink(loginAccount.get.userName, 48)</div>
               <div class="panel panel-default issue-box">
                 <div class="panel-body">
                   <span class="error" id="error-title"></span>
-                  <input type="text" name="title" class="form-control input-lg" style="width: 680px" placeholder="Title"/>
+                  <input type="text" name="title" class="form-control input-lg" placeholder="Title"/>
                   @helper.html.preview(
                     repository         = repository,
                     content            = "",
@@ -68,7 +68,7 @@
                     enableLineBreaks   = true,
                     enableTaskList     = true,
                     hasWritePermission = true,
-                    style              = "width: 680px; height: 200px;"
+                    style              = "height: 200px;"
                   )
                   <input type="hidden" name="targetUserName" value="@originRepository.owner"/>
                   <input type="hidden" name="targetBranch" value="@originId"/>

src/main/twirl/gitbucket/core/pulls/mergeguide.scala.html

@@ -83,8 +83,8 @@
       </div>
       @if(status.hasMergePermission){
         <div style="padding:15px;border-top:solid 1px #e5e5e5;background:#fafafa">
-          <input type="button" class="btn @if(!status.hasProblem){ btn-success }" id="merge-pull-request-button" value="Merge pull request"@if(!status.canMerge){ disabled="true"}/>
-          You can also merge branches on the <a href="#" class="show-command-line">command line</a>.
+          <input type="button" class="btn btn-lg @if(!status.hasProblem){btn-success} else {btn-default}" id="merge-pull-request-button" value="Merge pull request"@if(!status.canMerge){ disabled="true"}/>
+          &nbsp;&nbsp;You can also merge branches on the <a href="#" class="show-command-line">command line</a>.
           <div id="command-line" style="display: none;margin-top: 15px;">
             <hr />
             @if(status.hasConflict){
@@ -100,24 +100,23 @@
                 you can perform a manual merge on the command line.
               </p>
             }
-            @helper.html.copy("repository-url-copy", forkedRepository.httpUrl, true){
-              <div class="btn-group" data-toggle="buttons-radio">
-                <button class="btn btn-small active" type="button" id="repository-url-http">HTTP</button>
+            @helper.html.copy("repository-url-copy", forkedRepository.httpUrl){
+              <div class="input-group-btn" data-toggle="buttons">
+                <label class="btn btn-sm btn-default active" id="repository-url-http"><input type="radio" checked>HTTP</label>
                 @if(settings.ssh && loginAccount.isDefined){
-                  <button class="btn btn-small" type="button" id="repository-url-ssh" style="border-radius: 0px;">SSH</button>
+                  <label class="btn btn-sm btn-default" id="repository-url-ssh"><input type="radio">SSH</label>
                 }
               </div>
-              <input type="text" style="width: 500px;" value="@forkedRepository.httpUrl" id="repository-url" readonly />
+              <input type="text" class="form-control input-sm" value="@forkedRepository.httpUrl" id="repository-url" readonly />
             }
-            <div>
+            <div style="margin-top: 10px;">
               <p>
                 <span class="strong">Step 1:</span> From your project repository, check out a new branch and test the changes.
               </p>
               @defining(s"git checkout -b ${pullreq.requestUserName}-${pullreq.requestBranch} ${pullreq.branch}\n" +
                         s"git pull ${forkedRepository.httpUrl} ${pullreq.requestBranch}"){ command =>
-                @helper.html.copy("merge-command-copy-1", command){
-                  <pre style="width: 600px; float: left; font-size: 12px; border-radius: 3px 0px 3px 3px;" id="merge-command">@Html(command)</pre>
-                }
+                @helper.html.copy("merge-command-copy-1", command, "position: absolute; right: 31px;")()
+                <pre style="font-size: 12px; border-radius: 3px;" id="merge-command">@Html(command)</pre>
               }
             </div>
             <div>
@@ -126,9 +125,8 @@
               </p>
               @defining(s"git checkout ${pullreq.branch}\ngit merge --no-ff ${pullreq.requestUserName}-${pullreq.requestBranch}\n" +
                         s"git push origin ${pullreq.branch}"){ command =>
-                @helper.html.copy("merge-command-copy-2", command){
-                  <pre style="width: 600px; float: left; font-size: 12px; border-radius: 3px 0px 3px 3px;">@command</pre>
-                }
+                @helper.html.copy("merge-command-copy-2", command, "position: absolute; right: 31px;")()
+                <pre style="font-size: 12px; border-radius: 3px;">@command</pre>
               }
             </div>
           </div>
@@ -141,7 +139,7 @@
           Merge pull request #@issue.issueId from @{pullreq.requestUserName}/@{pullreq.requestBranch}
         </div>
         <span id="error-message" class="error"></span>
-        <textarea name="message" style="width: 635px; height: 80px;">@issue.title</textarea>
+        <textarea name="message" style="height: 80px;" class="form-control">@issue.title</textarea>
         <div>
           <input type="button" class="btn" value="Cancel" id="cancel-merge-pull-request"/>
           <input type="submit" class="btn btn-success" value="Confirm merge"/>
@@ -171,27 +169,25 @@ $(function(){
     $('#confirm-merge-form').show();
   });
 
-  @if(settings.ssh && loginAccount.isDefined){
-    $('#repository-url-http').click(function(){
+  @forkedRepository.sshUrl.map { sshUrl =>
+    $('#repository-url-http').click(function(e){
       // Update URL box
       $('#repository-url').val('@forkedRepository.httpUrl');
       $('#repository-url-copy').attr('data-clipboard-text', $('#repository-url').val());
       // Update command guidance
       $('#merge-command').text($('#merge-command').text().replace(
-        '@forkedRepository.sshUrl(settings.sshPort.getOrElse(SystemSettingsService.DefaultSshPort), loginAccount.get.userName)',
-        '@forkedRepository.httpUrl'
+        '@sshUrl', '@forkedRepository.httpUrl'
       ));
       $('#merge-command-copy-1').attr('data-clipboard-text', $('#merge-command').text());
     });
 
-    $('#repository-url-ssh').click(function(){
+    $('#repository-url-ssh').click(function(e){
       // Update URL box
-      $('#repository-url').val('@forkedRepository.sshUrl(settings.sshPort.getOrElse(SystemSettingsService.DefaultSshPort), loginAccount.get.userName)');
+      $('#repository-url').val('@sshUrl');
       $('#repository-url-copy').attr('data-clipboard-text', $('#repository-url').val());
       // Update command guidance
       $('#merge-command').text($('#merge-command').text().replace(
-        '@forkedRepository.httpUrl',
-        '@forkedRepository.sshUrl(settings.sshPort.getOrElse(SystemSettingsService.DefaultSshPort), loginAccount.get.userName)'
+        '@forkedRepository.httpUrl', '@sshUrl'
       ));
       $('#merge-command-copy-1').attr('data-clipboard-text', $('#merge-command').text());
     });

src/main/twirl/gitbucket/core/pulls/pullreq.scala.html

@@ -21,7 +21,9 @@
           @if(hasWritePermission || loginAccount.map(_.userName == issue.openedUserName).getOrElse(false)){
             <a class="btn" href="#" id="edit">Edit</a>
           }
-          <a class="btn btn-success" href="@url(repository)/issues/new">New issue</a>
+          @if(loginAccount.isDefined){
+            <a class="btn btn-success" href="@url(repository)/compare">New pull request</a>
+          }
         </div>
         <div class="edit-title pull-right" style="display: none;">
           <a class="btn" href="#" id="update">Save</a>  <a href="#" id="cancel">Cancel</a>
@@ -65,7 +67,7 @@
         }
       </div>
       <ul class="nav nav-tabs fill-width pull-left" id="pullreq-tab">
-        <li class="active"><a href="#conversation">Conversation <span class="badge">@comments.flatMap @{
+        <li><a href="#conversation">Conversation <span class="badge">@comments.flatMap @{
           case comment: IssueComment => Some(comment)
           case _: CommitComment => None
         }.size</span></a></li>
@@ -73,7 +75,7 @@
         <li><a href="#files">Files Changed <span class="badge">@diffs.size</span></a></li>
       </ul>
       <div class="tab-content fill-width pull-left">
-        <div class="tab-pane active" id="conversation">
+        <div class="tab-pane" id="conversation">
           @flash.get("error").map{ error =>
             <div class="alert alert-error">@error</div>
           }
@@ -94,6 +96,22 @@
 }
 <script>
 $(function(){
+  // Determine active tab from hash
+  if(location.hash == '#commits'){
+    $('li:has(a[href=#commits])').addClass('active');
+    $('div#commits').addClass('active');
+  } else if(location.hash == '#files'){
+    $('li:has(a[href=#files])').addClass('active');
+    $('div#files').addClass('active');
+  } else {
+    $('li:has(a[href=#conversation])').addClass('active');
+    $('div#conversation').addClass('active');
+  }
+  // Set hash when tab is clicked
+  $('ul.nav-tabs li a').click(function(e){
+    location.href = $(e.delegateTarget).attr("href");
+  });
+
   $('#pullreq-tab a').click(function (e) {
     e.preventDefault();
     $(this).tab('show');

src/main/twirl/gitbucket/core/repo/blob.scala.html

@@ -11,7 +11,7 @@
   @html.menu("code", repository){
     <div class="head">
       <div class="pull-right hide-if-blame"><div class="btn-group">
-        <a href="@url(repository)/find/@encodeRefName(branch)" class="btn btn-sm btn-default" data-toggle="tooltip" data-placement="bottom" data-hotkey="t" title="Quickly jump between files"><i class="octicon octicon-list-unordered"></i></a>
+        <a href="@url(repository)/find/@encodeRefName(branch)" class="btn btn-sm btn-default" data-hotkey="t">Find file</a>
       </div></div>
       <div class="line-age-legend">
         <span>Newer</span>

src/main/twirl/gitbucket/core/repo/commentform.scala.html

@@ -11,7 +11,7 @@
   @if(!fileName.isDefined){<hr/><br/>}
   <form method="POST" validate="true" style="max-width: 874px;">
     @if(!fileName.isDefined){
-      <div class="issue-avatar-image">@avatar(loginAccount.get.userName, 48)</div>
+      <div class="issue-avatar-image">@avatarLink(loginAccount.get.userName, 48)</div>
     }
     <div class="panel panel-default issue-comment-box">
       <div class="panel-body">
@@ -23,7 +23,7 @@
           enableLineBreaks   = true,
           enableTaskList     = true,
           hasWritePermission = hasWritePermission,
-          style              = "width: 635px; height: 100px; max-height: 150px;",
+          style              = "height: 100px; max-height: 150px;",
           elastic            = true
         )
       </div>

src/main/twirl/gitbucket/core/repo/commits.scala.html

@@ -46,7 +46,7 @@
                 <li><a href="@url(repository)/tree/@commit.id" style="line-height: 16px;"><i class="octicon octicon-code link"></i></a></li>
               </ul>
               <div>
-                <div class="commit-avatar-image">@avatar(commit, 40)</div>
+                <div class="commit-avatar-image">@avatarLink(commit, 40)</div>
                 <div>
                   <a href="@url(repository)/commit/@commit.id" class="commit-message" style="font-weight: bold;">@link(commit.summary, repository)</a>
                   @if(commit.description.isDefined){

src/main/twirl/gitbucket/core/repo/delete.scala.html

@@ -33,7 +33,7 @@
           </td>
         </tr>
       </table>
-      <div class="issue-avatar-image">@avatar(loginAccount.get.userName, 48)</div>
+      <div class="issue-avatar-image">@avatarLink(loginAccount.get.userName, 48)</div>
         <div class="box issue-comment-box">
         <div class="box-content">
           <div>