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If you ignore any "files" beginning with "." including directories, then the all() method will exclude .somedir, but not .somedir/somefile. Subsequently, when trying to copy all files returned from all(), it will fail when the method tries to copy a file into a directory that has not yet been created because .somedir was omitted from the return array of all(). I found this bug when trying to install the admin plugin and ./tmp was a mount and thus rename() failed and self:copy() was invoked instead (line 365).